<PAGE>

================================================================================

                                  UNITED STATES
                       SECURITIES AND EXCHANGE COMMISSION
                             WASHINGTON, D.C. 20549

                                 ---------------

                                    FORM 10-Q

                                 ---------------


[x] QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE
ACT OF 1934 FOR THE QUARTERLY PERIOD ENDED MARCH 31, 2003

                                       or

[_] TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES
                              EXCHANGE ACT OF 1934

         For the transaction period from ____________ to _______________

                         Commission File Number 0-28414

                                 ---------------

                                 UROLOGIX, INC.
             (Exact name of registrant as specified in its charter)


                   Minnesota                         41-1697237
         (State or other jurisdiction of          (I.R.S. Employer
          incorporation or organization)         Identification No.)

                 14405 21st Avenue North, Minneapolis, MN 55447
                    (Address of principal executive offices)

       Registrant's telephone number, including area code: (763) 475-1400

                                 ---------------

Indicate by check mark whether the registrant is an accelerated filer (as
defined in Rule 12b-2) of the Exchange Act.

                                 Yes [_] No [x]

Indicate by check mark whether the registrant (1) has filed all reports required
to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during
the preceding 12 months (or for such shorter period that the registrant was
required to file such reports), and (2) has been subject to such filing
requirements for the past 90 days.

                                 Yes [x] No [_]

As of April 30, 2003, the Company had outstanding 13,915,968 shares of common
stock, $.01 par value.

================================================================================

<PAGE>

PART I - FINANCIAL INFORMATION
ITEM 1. FINANCIAL STATEMENTS

                                 Urologix, Inc.
                            Condensed Balance Sheets
                      (In thousands, except per share data)

<TABLE>
<CAPTION>
                                                                          March 31,    June 30,
                                                                            2003         2002
------------------------------------------------------------------------ ----------- ----------
  ASSETS                                                                 (unaudited)     (*)
<S>                                                                      <C>         <C>
  Current assets:
     Cash and cash equivalents                                           $     603    $   1,604
     Available-for-sale investments                                          5,573       11,109
     Accounts receivable, net of allowance of $370 and $483                  2,111        4,554
     Inventories, net                                                        4,670        2,424
     Prepaids and other current assets                                         503          880
------------------------------------------------------------------------ ---------   ----------
          Total current assets                                              13,460       20,571
------------------------------------------------------------------------ ---------   ----------
  Property and equipment:
     Machinery, equipment and furniture                                      9,708        8,227
     Less accumulated depreciation                                          (5,823)      (5,007)
------------------------------------------------------------------------ ---------   ----------
          Property and equipment, net                                        3,885        3,220
  Other assets                                                               2,480        2,676
  Goodwill, net                                                             10,193       10,193
  Other intangible assets, net                                               9,279        9,777
------------------------------------------------------------------------ ---------   ----------
          Total assets                                                   $  39,297    $  46,437
======================================================================== =========   ==========

  LIABILITIES AND SHAREHOLDERS' EQUITY
  Current liabilities:
     Accounts payable                                                    $   1,804    $   2,117
     Accrued compensation                                                      578          686
     Other accrued expenses                                                  1,405        1,357
     Current portion of lease obligation                                       489          513
     Deferred income                                                         1,703        1,891
     Term debt                                                                 575            -
------------------------------------------------------------------------ ---------   ----------
          Total current liabilities                                          6,554        6,564
------------------------------------------------------------------------ ---------   ----------
  Long-term liabilities:
     Term debt                                                                   -          575
     Long-term lease obligation                                                  -          351
------------------------------------------------------------------------ ---------   ----------
          Total long-term liabilities                                            -          926
------------------------------------------------------------------------ ---------   ----------
   COMMITMENTS AND CONTINGENCIES (Note 10)
 Shareholders' equity:
Common stock, $.01 par value, 25,000 shares authorized;
 13,916 and 13,902 shares issued and outstanding                               139          139
Additional paid-in capital                                                 108,504      108,449
Accumulated deficit                                                        (75,988)     (69,680)
Accumulated other comprehensive income                                          88           39
------------------------------------------------------------------------ ---------   ----------
          Total shareholders' equity                                        32,743       38,947
------------------------------------------------------------------------ ---------   ----------
          Total liabilities and shareholders' equity                     $  39,297    $  46,437
======================================================================== =========   ==========
</TABLE>

     (*) The Balance Sheet at June 30, 2002 has been derived from the audited
     financial statements at that date but does not include all of the
     information and footnotes required by generally accepted accounting
     principles for complete financial statements.

  The accompanying notes to financial statements are an integral part of these
                                  statements.

                                       2

<PAGE>

                                 Urologix, Inc.
                       Condensed Statements of Operations
                      (In thousands, except per share data)
                                   (Unaudited)

<TABLE>
<CAPTION>
                                                   Three Months Ended              Nine Months Ended
                                                        March 31,                      March 31,
                                               ----------------------------- ---------------------------
                                                 2003              2002        2003              2002
--------------------------------------------------------------------------------------------------------
<S>                                            <C>               <C>         <C>           <C>

Sales                                          $ 4,558           $ 6,027     $  13,606     $      16,468
Cost of goods sold                               1,802             2,114         5,162             5,763
--------------------------------------------------------------------------------------------------------
Gross profit                                     2,756             3,913         8,444            10,705
--------------------------------------------------------------------------------------------------------

Costs and expenses:
Selling, general and administrative              3,739             2,962        11,509             8,548
Research and development                           927               930         2,864             3,127
Amortization of intangible assets                  166               166           498               498
--------------------------------------------------------------------------------------------------------
Total costs and expenses                         4,832             4,058        14,871            12,173
--------------------------------------------------------------------------------------------------------
Operating loss                                  (2,076)             (145)       (6,427)           (1,468)
Interest income, net                                 8                50           119               170
--------------------------------------------------------------------------------------------------------
Net loss                                       $(2,068)          $   (95)    $  (6,308)     $     (1,298)
========================================================================================================

========================================================================================================
Basic and diluted net loss per common
share                                          $ (0.15)          $ (0.01)    $   (0.45)     $      (0.09)
========================================================================================================

Basic and diluted weighted average number of
common shares outstanding                       13,916            13,867        13,914            13,785
                                               -------------------------     ---------------------------
</TABLE>

  The accompanying notes to financial statements are an integral part of these
                                  statements.

                                       3

<PAGE>

                                 Urologix, Inc.
                       Condensed Statements of Cash Flows
                                 (In thousands)
                                   (Unaudited)

<TABLE>
<CAPTION>
                                                                       Nine Months Ended
                                                                           March 31,
                                                                      ----------------------
                                                                          2003       2002
--------------------------------------------------------------------- ----------  ----------
<S>                                                                   <C>         <C>
Operating Activities:
      Net loss                                                           ($6,308)    ($1,298)
 Adjustments to reconcile net loss to net cash used for operating
  activities:
    Depreciation and amortization                                          1,510       1,246
    Value of options issued to consultants                                     -          38
    Provision for bad debts                                                   10         151
    Change in operating items:
     Accounts receivable                                                   2,433      (1,587)
     Inventories                                                          (3,651)     (1,674)
     Prepaids and other assets                                               377         (57)
     Accrued expenses and accounts payable                                  (561)        345
--------------------------------------------------------------------- ----------  ----------
    Net cash used for operating activities                                (6,190)     (2,836)
--------------------------------------------------------------------- ----------  ----------

Investing Activities:
  Purchase of property and equipment, net                                    (76)       (156)
   Proceeds from sale of available-for-sale investments, net               5,585       3,195
--------------------------------------------------------------------- ----------  ----------
    Net cash provided by investing activities                              5,509       3,039
--------------------------------------------------------------------- ----------  ----------

Financing Activities:
   Payments made on capital lease obligations                               (375)       (306)
   Proceeds from exercise of stock options                                    55         898
--------------------------------------------------------------------- ----------  ----------
    Net cash (used for) provided by financing activities                    (320)        592
--------------------------------------------------------------------- ----------  ----------

Net increase (decrease) in cash and cash equivalents                      (1,001)        795
Cash and cash equivalents:
  Beginning of period                                                      1,604          26
--------------------------------------------------------------------- ----------  ----------
  End of period                                                       $      603  $      821
===================================================================== ==========  ==========

Supplemental cash-flow information

     Cash paid during the period for interest                         $      108  $      204

     Net transfer of inventory to property and equipment              $    1,405  $      594
</TABLE>

  The accompanying notes to financial statements are an integral part of these
                                  statements.

                                       4

<PAGE>

                                 Urologix, Inc.
                     Notes to Condensed Financial Statements
                                 March 31, 2003
                                   (Unaudited)

1. Basis of presentation

     The accompanying unaudited condensed financial statements of Urologix, Inc.
(the "Company" or "Urologix") have been prepared in accordance with generally
accepted accounting principles for interim financial information and with the
instructions for Form 10-Q and Article 10 of Regulation S-X. The balance sheet
as of March 31, 2003, the statements of operations for the three and nine months
ended March 31, 2003 and 2002, and the statements of cash flows for the nine
months ended March 31, 2003 and 2002, are unaudited but include all adjustments
(consisting of normal recurring adjustments) necessary for a fair presentation
of the financial position at such dates and the operating results and cash flows
for those periods. Certain information normally included in financial statements
and related footnotes prepared in accordance with generally accepted accounting
principles has been condensed or omitted pursuant to the rules and regulations
of the Securities and Exchange Commission. The accompanying financial statements
should be read in conjunction with the financial statements and notes included
in Urologix' annual report on Form 10-K for the year ended June 30, 2002, filed
with the Securities and Exchange Commission.

     Results for any interim period shown in this report are not necessarily
indicative of results to be expected for any other interim period or for the
entire year. Certain prior year amounts have been reclassified to conform to
current year presentation.

2. New Accounting Pronouncements

     In July 2002, Statement of Financial Accounting Standards No. 146,
"Accounting for Costs Associated with Exit or Disposal Activities," (SFAS No.
146) was issued and is effective for activities beginning after December 31,
2002. SFAS No. 146 requires, among other things, that costs associated with an
exit activity (including restructuring and employee and contract termination
costs) or with a disposal of long-lived assets be recognized when the liability
has been incurred and can be measured at fair value. We adopted the provisions
of SFAS No. 146 on January 1, 2003. SFAS No. 146 will have an impact on any
restructuring activities initiated after December 31, 2002.

     In December 2002, the FASB issued SFAS No. 148, Stock Compensation. SFAS
No. 148 provides alternative methods of transition for a voluntary change to the
fair value based method of accounting for stock-based employee compensation. In
addition, SFAS No. 148 amends the disclosure requirements of SFAS No. 123 to
require prominent disclosures in both annual and interim financial statements
about the method of accounting for stock-based employee compensation and the
effect of the method used on reported results. We are making the required
interim disclosures effective with the quarter ended March 31, 2003.

3. Use of Estimates

     The preparation of financial statements in conformity with accounting
principles generally accepted in the United States of America requires
management to make estimates and assumptions that affect the reported amounts of
assets and liabilities and disclosure of contingent assets and liabilities at
the date of the financial statements and the reported amounts of revenue and
expenses during the reporting period. Actual results could differ from those
estimates.

                                       5

<PAGE>

                                 Urologix, Inc.
                     Notes to Condensed Financial Statements
                                 March 31, 2003
                                   (Unaudited)

4. Basic and diluted net loss per share

     Basic and diluted net loss per common share was computed by dividing the
net loss by the weighted average number of shares of common stock outstanding
during the periods presented. The following table summarizes the common stock
equivalents that were excluded from the calculation of diluted earnings per
share as the effect would be antidilutive.

                                        March 31, 2003            March 31, 2002
                                        --------------            --------------
        Three Months Ended                  8,647                   879,261
        Nine Months Ended                  56,712                   967,652

5. Inventories

Net inventories consisted of the following as of (in thousands):

                                        March 31, 2003          June 30, 2002
-----------------------------------------------------------------------------
Raw materials                            $       1,511            $       936

Work in process                                    484                    415

Finished goods                                   2,675                  1,073
-----------------------------------------------------------------------------
  Total inventories                      $       4,670            $     2,424
=============================================================================

6. Goodwill and other intangible assets

     Intangible assets consisting of acquired developed technologies and
customer base are amortized over useful lives of 15 years and 14 years,
respectively. We do not amortize the acquired trademarks as they are considered
indefinite-lived intangible assets. Long-lived assets, including amortizing
intangibles, are reviewed for impairment whenever events or changes in
circumstances indicate that the carrying amount of an asset may not be
recoverable. Recoverability of assets to be held and used is measured by a
comparison of the carrying amount of an asset to future net cash flows expected
to be generated by the asset. Following a review, if such assets are considered
to be impaired, the impairment to be recognized is measured by the amount by
which the carrying amount of the assets exceeds the fair value of the assets.
Assets to be disposed of are reported at the lower of the carrying amount or
fair value less costs to sell.

     With the adoption of SFAS 142, goodwill is no longer being amortized
against earnings and goodwill balances are subject to an impairment review on an
annual basis or sooner if indicators of potential impairment exists. The test
for impairment requires us to make several estimates about fair value, most of
which are based on total market capitalization as compared to the carrying value
of our net assets. If our total market capitalization is at or below the
carrying value of our net assets for several quarters, it may prompt us to
engage a third party valuation firm to perform a valuation to assess whether our
goodwill is impaired. Amortization of intangible assets was $166,000 and
$498,000 for the three and nine-month periods ended March 31, 2003. Future
annual amortization expense for acquired intangible assets is expected to be
$664,000 for each of the next five fiscal years.

                                       6

<PAGE>

                                 Urologix, Inc.
                     Notes to Condensed Financial Statements
                                 March 31, 2003
                                   (Unaudited)

     Balances of acquired intangible assets were as follows (in thousands):

<TABLE>
<CAPTION>
                                                                   As of March 31, 2003
                                                        ------------------------------------------
                                                           Carrying      Accumulated
                                                            Amount      Amortization       Net
--------------------------------------------------------------------------------------------------
<S>                                                     <C>             <C>                <C>
     Amortizing intangibles:

       Developed technologies                                 $7,500          $1,250        $6,250

       Customer base                                           2,300             411         1,889
                                                               -----             ---         -----
           Subtotal                                            9,800           1,661         8,139

     Non-amortizing intangibles and goodwill:

        Goodwill                                              10,716             523        10,193

        Trademarks                                             1,200              60         1,140
                                                               -----              --         -----
           Subtotal                                           11,916             583        11,333
--------------------------------------------------------------------------------------------------
     Total acquired intangible assets                        $21,716          $2,244       $19,472
==================================================================================================
</TABLE>

7. Comprehensive Loss

     Comprehensive loss includes all changes in equity during a period except
those resulting from investments by and distributions to shareholders. Our
comprehensive loss represents net loss adjusted for unrealized gains (losses) on
available-for-sale investments.

8. Warranty

     Sales of our procedure kits and Cooled ThermoTherapy systems are subject to
limited warranty guarantees. Procedure kit guarantees are limited to the
disposable's printed date of expiration and system guarantees typically extend
for one year after the date of installation or 15 months after the date of
delivery, whichever is earlier. Standard warranty terms are included in customer
contracts. Under the terms of these warranties, we are obligated to repair or
replace any components or parts we deem defective in workmanship or materials.
We reserve the right to reject warranty claims where we determine that failure
is due to normal wear, customer modifications, improper maintenance or misuse.
We record warranty provision monthly based on an estimated warranty expense
percentage applied to current period revenue. The percentage applied reflects
historical warranty incidence over the preceding twelve-month period. Both the
experience percentage and the warranty liability are evaluated on an ongoing
basis for adequacy. Warranty provisions and claims for the nine-month period
ended March 31, 2003 were as follows (in thousands):

      Nine Months       Beginning       Warranty        Warranty       Ending
         Ended           Balance       Provisions        Claims       Balance
   ----------------- --------------- --------------- -------------- -----------

    March 31, 2003         $203           $124           ($183)         $144

                                       7

<PAGE>

                                 Urologix, Inc.
                     Notes to Condensed Financial Statements
                                 March 31, 2003
                                   (Unaudited)

9. Stock Options

     We account for stock options under the provisions of Accounting Principles
Board Opinion 25, under which no compensation cost has been recognized. The
following pro forma net loss and net loss per share have been determined as if
we had used the fair value method of accounting for our stock option grants and
employee stock purchase plan share elections consistent with the method of SFAS
123, "Accounting for Stock-Based Compensation". Under this method, compensation
expense is recognized over the applicable vesting periods and is based on the
shares under option and their related fair values on the grant date.

<TABLE>
<CAPTION>
                                                     (in thousands, except per share data)
                                         ------------------------------------------------------------
                                                Three months ended                Nine months ended
                                                    March 31,                        March 31,
                                         ------------------------------   ---------------------------
                                             2003            2002             2003            2002
                                         -----------      -------------   -----------   -------------

<S>                                      <C>              <C>             <C>           <C>
   Net loss (as reported)                $    (2,068)     $         (95)  $    (6,308)  $      (1,298)
   Non-cash compensation expense                (730)              (815)       (2,073)         (2,067)
                                              ------               ----        ------          ------
   Pro forma                             $    (2,798)     $        (910)  $    (8,381)  $      (3,365)

   Net loss per share (as reported)      $     (0.15)     $       (0.01)  $     (0.45)  $       (0.09)
   Non-cash compensation expense               (0.05)             (0.06)        (0.15)          (0.15)
                                              ------              -----        ------          ------
   Pro forma                             $     (0.20)     $       (0.07)  $     (0.60)  $       (0.24)
</TABLE>


10. Legal Proceedings

     Our business exposes us to product liability claims that are inherent in
the testing, production, marketing and sale of medical devices. Management
believes any losses that may occur from these matters are adequately covered by
insurance, and the ultimate outcome of these matters will not have a material
effect on the financial position or results of operations of the Company. In
addition, the Company is involved in the litigation set forth below.

Urologix v. ProstaLund AB et al.

     In March 2002, we filed a patent infringement action against ProstaLund AB,
ProstaLund Operations AB, and Circon Corporation a/k/a ACMI Corporation in the
United States District Court for the Eastern District of Wisconsin (and by a
later amended complaint) alleging that the defendants' products infringed two
United States Patents that were assigned to us: U.S. Patent No. 5,234,004 ("004
Patent") and U.S. Patent No. 5,509,929 the ("929 Patent"). We sought a
preliminary injunction prohibiting the manufacture, use, sale, or offer for sale
of the "ProstaLund Feedback Treatment" and an unspecified amount of damages. The
defendants counterclaimed, alleging that they do not infringe our patents, that
our patents are invalid and that we have "marked" our products as "patented" in
a manner that violates patent law. The defendants are also seeking recovery of
their attorneys' fees.

     In October 2002, the Court issued two separate Orders in this case. In an
Order dated October 10, 2002, the Court determined that the `004 patent was not
entitled to the benefit of an earlier filing date of a parent application and as
a result was invalid. In an Order dated October 16, 2002, the Court denied our
motion for a preliminary injunction on the `929 patent.

                                       8

<PAGE>

                                 Urologix, Inc.
                     Notes to Condensed Financial Statements
                                 March 31, 2003
                                   (Unaudited)

     Subsequent to the Court Action, in November 2002 in response to our
request, the United States Patent and Trademark Office ("PTO") issued an office
action granting Urologix the benefit of the earlier office action on the `004
patent. In light of the PTO office action, we filed a motion with the Court in
November 2002 requesting that the Court vacate the October 10, 2002 Order
determining the `004 patent was invalid. In April 2003, the Court denied our
motion to vacate the October 10, 2002 Order.

     We are evaluating our options in connection with the lawsuit and are
preparing for a trial on the merits of the infringement claims of the `929
patent which has been scheduled by the Court for January 2004.

                                        9

<PAGE>

ITEM 2. MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS
OF OPERATIONS

     The following is a discussion and analysis of Urologix' financial condition
and results of operations for the three and nine-month periods ended March 31,
2003 and 2002. This section should be read in conjunction with the condensed
financial statements and related notes in Item 1 of this report and Urologix'
Annual Report on Form 10-K for the year ended June 30, 2002, which has been
filed with the Securities and Exchange Commission.

              Cautionary Note Regarding Forward-Looking Statements

     This Management's Discussion and Analysis of Financial Condition and
Results of Operations contains, in addition to historical information,
forward-looking statements that are based on our current expectations, beliefs,
intentions or future strategies. These statements are subject to risks and
uncertainties that could cause actual results to differ materially from the
statements, including the extent to which the physicians performing Cooled
ThermoTherapy procedures are able to obtain third-party reimbursement, changes
in the reimbursement environment, market acceptance and the rate of adoption of
Cooled ThermoTherapy for the treatment of benign prostatic hyperplasia (BPH) by
the medical community, our ability to successfully protect our intellectual
property rights, the ability of our key suppliers to provide product, the impact
of competitive treatments, products and pricing, and the effectiveness of our
sales and marketing organization. We caution readers not to place undue reliance
on any of these forward-looking statements, which speak only as of the date
made. A detailed discussion of risks and uncertainties may be found below in
"Factors That May Affect Our Future Results and The Trading Price of Our Common
Stock" and in our Annual Report on Form 10-K for the year ended June 30, 2002.

OVERVIEW

     Urologix, Inc., based in Minneapolis, Minnesota, develops, manufactures and
markets minimally invasive medical products for the treatment of urological
disorders.

     We have developed and offer non-surgical, catheter-based therapies that use
a proprietary cooled microwave technology for the treatment of BPH, a disease
that dramatically affects more than 23 million men worldwide by causing adverse
changes in urinary voiding patterns. We market our products under the Targis and
Prostatron names. Both systems utilize Cooled ThermoTherapy, a targeted
microwave energy combined with a unique cooling mechanism that protects healthy
tissue and enhances patient comfort while providing safe, effective, lasting
relief from the symptoms of BPH. Cooled ThermoTherapy can be performed without
anesthesia or intravenous sedation and, as a result, can be performed in a
physician's office or an outpatient clinic. We believe Cooled ThermoTherapy
provides an efficacious, safe and cost-effective solution for BPH that is
superior to medication without the complications and side effects inherent in
surgical procedures. We generate revenue from the sale of Cooled ThermoTherapy
systems and the related disposable procedure kits.

     Third-party reimbursement is essential to acceptance of the Cooled
ThermoTherapy procedure. We estimate that more than 50% of patients who receive
treatment in the United States are eligible for Medicare coverage, making
Medicare reimbursement critical for widespread market acceptance in the United
States. The remaining patients will either be covered by private insurers,
including traditional indemnity health insurers and managed care organizations,
or they will be private-paying patients.

     The rate of Medicare reimbursement for Cooled ThermoTherapy is dependent on
the site of service. Medicare reimburses outpatient hospital-based procedures
with a fixed rate under a "prospective payment system." Under this method of
reimbursement, a hospital receives a fixed reimbursement for each procedure
performed in its facility.

     Medicare began to reimburse for Cooled ThermoTherapy procedures performed
in a physician's office on a fixed-rate basis on January 1, 2001. The change was
a significant milestone, as it marked the first time patients were covered
directly by Medicare for in-office Cooled ThermoTherapy procedures.

                                       10

<PAGE>

     Our goal is to grow Cooled ThermoTherapy as a standard of care for the
treatment of BPH. Our business strategy to achieve this goal is to (i) increase
market awareness of Cooled ThermoTherapy, (ii) create access to Cooled
ThermoTherapy through both the sale and long-term use arrangements of Cooled
ThermoTherapy systems and (iii) increase the use of Cooled ThermoTherapy by
physicians who already have access to a Cooled ThermoTherapy System.

     We expect to continue to incur operating losses as we fund marketing and
sales activities and invest in our effort to protect our intellectual property.
Our future profitability will be dependent upon, among other factors, our
success in achieving market acceptance of the Cooled ThermoTherapy procedures in
the physician's office, our success in obtaining and maintaining necessary
regulatory clearances, our ability to manufacture at the volumes and quantities
the market requires, and the extent to which Medicare and other health care
payers continue to reimburse costs of Cooled ThermoTherapy procedures performed
in hospitals, ambulatory surgery centers and physicians' offices and the amount
of reimbursement provided.

Critical Accounting Policies:

     We set forth below those material accounting policies that we believe are
the most critical to an investor's understanding of our financial results and
condition and require complex management judgment.

Revenue Recognition

     We recognize revenue in accordance with Securities and Exchange Commission
Staff Accounting Bulletin 101. We recognize revenue from the sale of Cooled
ThermoTherapy systems upon acceptance by the customer. We recognize revenue from
disposable product sales at the time of shipment. In addition to sales of our
Cooled ThermoTherapy systems, we place our Cooled ThermoTherapy systems with
urology groups under a variety of programs for both evaluation and long-term
use. These programs are designed to expand our installed base, and thus increase
the market for our disposable catheters. Under these programs, we generally
charge a higher price for each disposable to include the use of our Cooled
ThermoTherapy system by the urology group. Revenue for warranty service
contracts is deferred and recognized on a straight-line basis over the contract
period. We record a provision for estimated sales returns on product sales in
the same period as the related revenue is recorded. The provision for estimated
sales returns is based on historical sales returns, analysis of credit memo data
and other known factors. If the historical data we use to calculate this
estimate does not properly reflect future returns, our revenues could be
overstated.

Product Warranty

     We record a liability for warranty claims at the time of sale. The amount
of the liability is based on the trend in the historical ratio of product
failure rates, material usage and service delivery costs to sales, the
historical length of time between the sale and resulting warranty claim and
other factors. Should actual product failure rates, material usage or repair
costs differ from our estimates, revisions to the estimated warranty liability
would be required.

Inventory Carrying Value and Related Allowance for Excess and Obsolete
Inventory.

     On a periodic basis we analyze the level of inventory on hand, its cost in
relation to market value and estimated customer requirements to determine
whether write-downs for shrinkage, excess, obsolete or slow moving inventory are
required. The amounts of these reserves are based upon average selling prices,
historical experience and forecasted demand. Our reserve requirements could be
materially different if average selling prices decline or demand for our
products decreased because of competitive conditions or market acceptance, or if
products become obsolete because of advancements in the industry.

Allowance for Doubtful Accounts

     We maintain allowances for doubtful accounts for estimated losses resulting
from the inability of our customers to make required payments. This allowance is
regularly evaluated by us for adequacy by taking into consideration factors such
as past experience, credit quality of the customer base, age of the receivable
balances, both individually and in the aggregate, and current economic
conditions that may affect a customer's ability to pay. If the financial
condition of our customers were to deteriorate, resulting in an impairment of
their ability to make payments, additional allowances may be required.

                                       11

<PAGE>

Valuation of Long-Lived and Intangible Assets and Goodwill

     In fiscal 2002, we adopted Statement of Financial Accounting Standards
(SFAS) 142, "Goodwill and Other Intangible Assets," and as a result, we have
ceased to amortize approximately $10.2 million of goodwill and $1.1 million of
trademarks. Goodwill is tested for impairment annually or more frequently if
changes in circumstance or the occurrence of events suggests impairment may
exist. The test for impairment requires us to make several estimates about fair
value, most of which are based on projected future cash flows. Our estimates
associated with the goodwill impairment tests are considered critical, due to
the amount of goodwill recorded on our balance sheet and the judgment required
in determining fair value amounts, including projected future cash flows.

     Other intangible assets consist of developed technology, customer base and
trademarks. Developed technology and customer base are amortized using the
straight-line method over their estimated useful lives of 15 and 14 years,
respectively. The trademark asset is considered to be an intangible asset with
an indefinite useful life, and it will not be amortized until its useful life is
determined to be no longer indefinite. We review these definite and
indefinite-lived intangible assets for impairment annually or as changes in
circumstance or the occurrence of events suggests the remaining value may not be
recoverable.

RESULTS OF OPERATIONS

Net Sales

     Net sales decreased to $4.6 million and $13.6 million for the three and
nine-month periods ended March 31, 2003, from $6.0 million and $16.5 million
during the same periods in the prior fiscal year. The decrease in revenue in
both the three and nine-month periods was caused by a decrease in the number of
Cooled ThermoTherapy systems sold as well as a decrease in the average per unit
selling price of these systems and a decrease in the number of procedure kits
sold. Sales of disposable procedure kits accounted for nearly 90% of total
revenue in the first nine months of fiscal 2003, compared to approximately 75%
in the same period in fiscal 2002. Both the volume of equipment sold and the
sale price of our equipment were affected by competitive offerings in our
marketplace. In addition, our effort to expand our domestic sales force during
the first six months of fiscal 2003 has limited the growth of procedure kit
sales. During the expansion, both our sales management and our experienced sales
representatives invested a significant amount of time recruiting and training
new team members which slowed work with existing customers and the effort to
generate new business. We completed the expansion of our sales organization in
December 2002 and have refocused efforts on maintaining and increasing sales. At
March 31, 2003, we had an installed base of 346 Cooled ThermoTherapy systems,
including the units that are being used by customers pursuant to our evaluation
and long-term use programs.

     In January 2003, Medicare published new rates for office-based microwave
treatments, including Cooled ThermoTherapy. These rates became effective for
office based microwave treatment claims processed by Medicare on or after March
1, 2003. The new rates published by Medicare reflect a decrease of approximately
30% from previous office-based reimbursement rates. We do not know what impact
this rate change will ultimately have on our business. See "Factors That May
Affect Our Future Results and The Trading Price of Our Common Stock-Third-party
reimbursement is critical to market acceptance of our products."

Cost of Goods Sold and Gross Profit

     Cost of goods sold includes raw materials, labor, overhead and royalties
incurred in connection with the production of our Cooled ThermoTherapy control
units and disposable procedure kits. Cost of goods sold for the three and
nine-month periods ended March 31, 2003 were $1.8 million and $5.2 million, down
from $2.1 million and $5.8 million during the same periods of fiscal 2002. The
decrease resulted from a decrease in the number of Cooled ThermoTherapy systems
sold as well as a decrease in the number of procedure kits sold.

     Gross profit as a percentage of sales for the three and nine-month periods
ended March 31, 2003 decreased to 60% and 62% respectively, from 65% in both the
three and nine-month periods ended March 31, 2002. The decreases have resulted
primarily from the drop in the average per unit selling price of our Cooled
ThermoTherapy systems.

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Selling, General & Administrative

     Selling, general and administrative expenses increased to $3.7 million and
$11.5 million for the three and nine-month periods ended March 31, 2003, from
$3.0 million and $8.5 million in the same periods of fiscal year 2002. The
increased expenses are primarily attributable to legal expenses related to a
patent infringement suit we filed to protect our intellectual property as well
as the expansion of our direct sales force. We expect to continue to incur legal
expenses in connection with our efforts to protect our intellectual property.

Research and Development

     Research and development expenses, which include expenditures for product
development, regulatory compliance and clinical studies, decreased to $927,000
and $2.9 million from $930,000 and $3.1 million for the three and nine-month
periods ended March 31, 2003 and 2002, respectively. The decrease in expenses in
both periods resulted primarily from decreased expenditures on product
development activities, partially offset by increased clinical trial expenses.
We expect quarterly research and development expenses for the fourth quarter of
the fiscal year to be lower than the current quarter.

Amortization of intangible assets

     Amortization of intangible assets was $166,000 and $498,000 for both the
three and nine-month periods ended March 31, 2003 and 2002, respectively. The
amortization of intangible assets is a result of the purchase of the Prostatron
Cooled ThermoTherapy product line from EDAP in October 2000.

Net interest income

     Net interest income decreased to $8,000 and $119,000 for the three and
nine-month periods ended March 31, 2003 from $50,000 and $170,000 during the
same period of the prior fiscal year. The decrease is primarily attributable to
lower interest income due to lower cash and investment balances, partially
offset by lower interest expense.

LIQUIDITY AND CAPITAL RESOURCES

     We have financed our operations since inception through sales of equity
securities and sales of product. As of March 31, 2003, we had total cash, cash
equivalents and available-for-sale investments of $6.2 million and working
capital of $6.9 million.

     During the nine months ended March 31, 2003, we used $6.2 million of cash
in operating activities, primarily as a result of our net loss of $6.3 million
and an increase in inventory of $3.7 million that was partially offset by a net
decrease in accounts receivable of $2.4 million and depreciation and
amortization of $1.5 million. Our inventory increased due to the receipt of a
large number of control units from our third-party suppliers. We expect
inventory balances to decrease over the next several quarters as inventory
purchases are scheduled to decrease and inventory is sold or transferred into
property and equipment for use in our evaluation and long-term use programs.

     We generated $5.5 million from investing activities, resulting from the net
sale of $5.6 million of available-for-sale investments partially offset by the
purchase of $76,000 of property and equipment.

     We used $320,000 in financing activities as a result of $375,000 of
payments on capital lease obligations offset by $55,000 from the exercise of
stock options.

     We expect to continue to incur additional losses and we plan to continue
offering customers a variety of programs for both evaluation and long-term use
of our Cooled ThermoTherapy equipment in addition to purchase options. As of
March 31, 2003, our property and equipment, net, included approximately $2.8
million of equipment used in an evaluation or long-term use program. Depending
on the growth of these programs, we may use additional capital to finance the
units used by these customers.

     We are exploring ways to reduce our expenses and efficiently use working
capital to preserve cash while we focus on maintaining and increasing sales and
continue to provide high quality support to our customers. Third party financing
may also present opportunities to leverage the equipment used by our customers
under evaluation and long-term use programs.

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     Based upon these factors, we believe our $6.2 million in cash, cash
equivalents, and available-for-sale securities, together with funds generated
from product sales, will be sufficient to fund our working capital and capital
resources need for the next 12 months.

     There can be no assurance, however, that we will not require additional
financing in the future or that any additional financing will be available to us
on satisfactory terms, if at all.

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FACTORS THAT MAY AFFECT OUR FUTURE RESULTS AND THE TRADING PRICE OF OUR COMMON
STOCK

     The risks and uncertainties described below are not the only ones we face.
Additional risks and uncertainties not presently known to us or that we
currently deem immaterial may also affect our operations. The occurrence of any
of the following risks could harm our business. In that case, the trading price
of our common stock could decline, and investors may lose all or part of their
investment.

We have a limited operating history and expect to continue to generate losses.

     We have incurred substantial losses since our inception and, if physicians
do not purchase and use our Cooled ThermoTherapy systems to treat patients with
BPH, we may never achieve or maintain profitable operation. We incurred a net
loss of approximately $6.3 million for the nine month period ended March 31,
2003, and have incurred losses of approximately $76 million since our inception.
We expect to continue to incur operating losses in the near future as we
continue our investment in sales and marketing activities to increase sales,
continue to incur costs and expenses to protect our intellectual property, and
fund research and development activities. We will need to significantly increase
the revenues we receive from sales of our products to fund these operating
expenses. We may be unable to do so, and therefore may never achieve
profitability. Even if we do achieve profitability, we cannot be certain that we
will be able to sustain or increase profitability on a quarterly or annual
basis.

Our products may not achieve market acceptance, which could limit our future
revenue.

     Physicians will not recommend Cooled ThermoTherapy procedures unless they
conclude, based on clinical data and other factors, that it is an effective
alternative to other methods of enlarged prostate treatment, including more
established methods. Patient acceptance of the procedure will depend in part
upon physician recommendations and on other factors, including the degree of
invasiveness and the rate and severity of complications associated with the
Cooled ThermoTherapy procedure compared with other therapies. Patient acceptance
of the Cooled ThermoTherapy procedure also will depend upon the ability of
physicians to educate these patients on their treatment choices. Health care
payer acceptance of our procedure will require, among other things, evidence of
the cost effectiveness of Cooled ThermoTherapy compared to other BPH therapies.
Our marketing strategy must overcome the difficulties inherent in the
introduction of new technology to the medical community. If our Cooled
ThermoTherapy procedure is not accepted by physicians, patients or payers, or is
accepted more slowly than expected, we may never operate profitably.

We are faced with intense competition and rapid technological and industry
change.

     The medical device industry is characterized by rapid technological change,
changing customer needs and frequent new product introductions. Our products may
be rendered obsolete as a result of future innovations. We face intense
competition from other device manufacturers and surgical manufacturers, as well
as from pharmaceutical companies. Many of our competitors are significantly
larger than we are and have greater financial, technical, research, marketing,
sales, distribution and other resources than we do. There is intense price
competition for products developed in our markets. Our competitors may develop
or market technologies and products, including drug-based treatments that are
more effective or commercially attractive than any we are developing or
marketing. Our competitors may succeed in obtaining regulatory approval and
introducing or commercializing products before we do. These developments could
have a significant negative effect on our financial condition. Even if we are
able to compete successfully, we may not be able to do so in a profitable
manner.

Third- party reimbursement is critical to market acceptance of our products.

     Our future revenues are subject to uncertainties regarding health care
reimbursement and reform. In the United States, health care providers, such as
hospitals and physicians, generally rely on third-party payers.

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<PAGE>

     Third-party reimbursement is dependent upon decisions by the Center for
Medicare and Medicaid Services (CMS), contract Medicare carriers, individual
managed care organizations, private insurers, foreign governmental health
programs and other payers of health care costs. Failure to receive or maintain
favorable coding, coverage and reimbursement determinations for Cooled
ThermoTherapy by these organizations could discourage physicians from using our
products. We may be unable to sell our products on a profitable basis if
third-party payers deny coverage, provide low reimbursement rates or reduce
their current levels of reimbursement.

     On January 17, 2003, Medicare published new rates for office-based
microwave treatments, including Cooled ThermoTherapy. These rates became
effective for office based microwave treatments claims processed by Medicare on
or after March 1, 2003. The new rates published by Medicare reflect a decrease
of approximately 30% from previous office-based reimbursement rates. We do not
yet know what impact this rate change will ultimately have on our business. The
rate change may discourage some physicians from using our products or could
limit our future growth.

     The continuing efforts of government, insurance companies, health
maintenance organizations and other payers of health care costs to contain or
reduce costs of health care may affect our future revenues and profitability.
With recent federal and state government initiatives directed at lowering the
total cost of health care, the United States Congress and state legislatures
will likely continue to focus on health care reform, including the reform of
Medicare and Medicaid systems, and on the cost of medical products and services.
Additionally, third-party payers are increasingly challenging the prices charged
for medical products and services. Also, the trend toward managed health care in
the United States and the concurrent growth of organizations such as HMOs that
could control or significantly influence the purchase of health care services
and products, as well as legislative proposals to reform health care or reduce
government insurance programs, may also result in lower prices for or rejection
of our products. The cost containment measures that health care payers and
providers are instituting and the effect of any health care reform could cause
reductions in the amount of reimbursement available, and could have a materially
adverse affect on our revenues and ability to operate profitably.

Our intangible assets and goodwill could become impaired.

     Intangible assets consisting of acquired developed technologies and
customer base are amortized over useful lives of 15 years and 14 years,
respectively. We do not amortize the acquired trademarks as they are considered
indefinite-lived intangible assets. Long-lived assets, including amortizing
intangibles, are reviewed for impairment whenever events or changes in
circumstances indicate that the carrying amount of an asset may not be
recoverable. Recoverability of assets to be held and used is measured by a
comparison of the carrying amount of an asset to future net cash flows expected
to be generated by the asset. Following a review, if such assets are considered
to be impaired, the impairment to be recognized is measured by the amount by
which the carrying amount of the assets exceeds the fair value of the assets.

     With the adoption of SFAS 142, goodwill is no longer being amortized
against earnings and goodwill balances are subject to an impairment review on an
annual basis or sooner if indicators of potential impairment exists. The test
for impairment requires us to make several estimates about fair value, most of
which are based on total market capitalization as compared to the carrying value
of our net assets. If our total market capitalization is at or below the
carrying value of our net assets for several quarters, it may prompt us to
engage a third party valuation firm to perform a valuation to access whether our
goodwill is impaired. Amortization of intangible assets was $166,000 and
$498,000 for the three and nine-month periods ended March 31, 2003. Future
annual amortization expense for acquired intangible assets is expected to be
$664,000 for each of the next five fiscal

Our inventory could become impaired.

     At March 31, 2003, our inventory had a carrying value of $4.7 million,
including finished goods of $2.7 million. As we discussed in Management's
Discussion and Analysis in this Form 10-Q, during the nine months ended March
31, 2003, we experienced a decrease in the average selling price of our Cooled
ThermoTherapy systems as a result of increased competition in our market.
Although we believe that our Cooled ThermoTherapy system has demonstrated
superior results to those of our competitors, if we continue to experience
significant price competition that results in a need to decrease the selling
prices of our Cooled ThermoTherapy system, we may

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<PAGE>

determine that our inventory of Cooled ThermoTherapy systems is impaired and be
required to revalue it, thereby incurring a charge.

We are dependent on adequate protection of our patent and proprietary rights.

     We rely on patents, trade secrets, trademarks, copyrights, know-how,
license agreements and contractual provisions to establish and protect our
intellectual property rights. These legal means afford us only limited
protection, however, and may not adequately protect our rights or remedies to
gain or keep any advantages we may have over our competitors.

     In March 2002, we filed a patent infringement action against ProstaLund AB,
ProstaLund Operations AB, and Circon Corporation a/k/a ACMI Corporation in the
United States District Court for the Eastern District of Wisconsin (and by a
later amended complaint) alleging that the defendants' products infringed two
United States Patents that were assigned to us. The defendants raised
counterclaims against us and are seeking recovery of their legal fees. In
October 2002, the Court issued orders invalidating one of our patents and denied
our motion for a preliminary injunction. See "Legal Proceedings" for a
discussion of developments in these proceedings.

     Although we continue to believe that we will prevail in the trial, there
can be no assurance that we will be successful. In addition, because we lost our
request for injunctive relief, we are currently unable to prevent the defendants
from selling their products in the United States. Although we believe that our
products have demonstrated superior results to the defendants' products, there
can be no assurance that the defendants will not be able to capture a
significant part of the market for less invasive BPH treatments, which could
have an adverse effect on our future results of operations and profitability. In
addition, this litigation has resulted in substantial expense and we anticipate
that there may be additional substantial expense involved in this litigation.
Furthermore, the existence of this litigation may divert our attention from
implementing our business strategy.

     Additional litigation against other parties may be necessary in the future
to enforce our intellectual property rights, to protect our patents and trade
secrets, and to determine the validity and scope of our proprietary rights.
Furthermore, we cannot be assured that others have not developed or will not
develop similar products or manufacturing processes, duplicate any of our
products or manufacturing processes, or design around any of our patents.

We depend upon our Cooled ThermoTherapy systems for all of our revenues.

     All of our revenues are derived from sales of our Cooled ThermoTherapy
systems and single-use disposable treatment catheters. As a result, our success
is solely dependent upon the success of our Cooled ThermoTherapy systems. To
date, our Cooled ThermoTherapy systems have not received widespread market
acceptance. If we are unable to commercialize the use of these systems
successfully, our business, financial condition and results of operations will
be materially and adversely affected.

We have limited manufacturing experience and are dependent upon a limited number
of third-party suppliers to manufacture our products.

     We have contracted with third parties for the production of the Prostatron
product line and the Targis system control unit pursuant to written supply
agreements. If, for any reason, any of our third-party manufacturers are unable
or unwilling to manufacture the products for us in the future, we could incur
significant delays in obtaining a substitute contract manufacturer. Also, we
purchase additional components used in our products from various suppliers and
rely on single sources for several components. One such component is obtained
from a source that has a patent for the technology. Delays could result if
supply of this component or other components were interrupted. These delays
could be extended in certain situations in which a substitute contract
manufacturer or a component substitution would require approval by the FDA of a
PMA supplement. The termination or interruption of any of these relationships,
or the failure of these manufacturers or suppliers to supply products or
components to us on a timely basis or in sufficient quantities, likely would
cause us to be unable to meet customer orders for our products and harm our
business.

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<PAGE>

     We produce the disposable treatment catheter for the Targis system. We have
limited experience in rapidly scaling up production. Manufacturers often
encounter difficulties in scaling up production of new products, including
problems involving production yields, product recalls, quality control and
assurance, component supply and lack of qualified personnel.

     If we or any of our third-party manufacturers or suppliers experience
production problems, we may not be able to locate an alternate manufacturer
promptly. Identifying and qualifying alternative suppliers of components takes
time and involves significant additional costs and may delay the production of
our products. The FDA requires us to identify any supplier we use. The FDA may
require additional testing of any component from new suppliers prior to our use
of these components. The termination of our relationships with these single
source suppliers or the failure of these parties to supply us with the
components on a timely basis and in sufficient quantities likely would cause us
to be unable to meet customer orders for our products in a timely manner or
within our budget and harm our business.

We are dependent on distributors for international sales.

     To date, a majority of our revenues outside the United States have been
derived from sales through third-party distributors. Although we intend to work
with our distributors and agents to improve international revenue, we expect a
decline in fiscal 2003 over fiscal 2002, driven primarily by a decrease in
reimbursement for Cooled ThermoTherapy in Japan. Further, the failure of our
distributors to market our products in the international markets effectively or
our failure to locate and establish relationships with reputable distributors
could have an adverse effect on our ability to achieve penetration of these
markets and establish long-term acceptance of Cooled ThermoTherapy.

We are dependent on key personnel.

     Failure to attract and retain skilled personnel could hinder our sales and
marketing and research and development efforts. Our future success depends to a
significant degree upon our ability to attract and retain qualified sales
personnel and the continued services of key technical and senior management
personnel. The inability to retain or attract qualified personnel could have a
significant negative effect and thereby materially harm our business and
financial condition.

Government regulation can have a significant impact on our business.

     Government regulation in the United States and other countries is a
significant factor affecting the research and development, manufacture and
marketing of our products. In the United States, the FDA has broad authority
under the Federal Food, Drug and Cosmetic Act and the Public Health Service Act
to regulate the distribution, manufacture and sale of medical devices. Sales of
drugs and medical devices outside the United States are subject to government
regulation and restrictions that vary from country to country. The process of
obtaining FDA and other required regulatory approvals is lengthy and expensive.

     We may not be able to obtain necessary approvals for clinical testing or
for the manufacturing or marketing of our products. Failure to comply with
applicable regulatory approvals can, among other things, result in fines,
suspension of regulatory approvals, product recalls, operating restrictions and
criminal prosecution. In addition, government regulations may be established
that could prevent, delay, modify or rescind regulatory approval of our
products. Any such position or change of position by the FDA may adversely
impact our business and financial condition. Regulatory approvals, if granted,
may include significant limitations on the indicated uses for which our products
may be marketed. In addition to obtaining such approvals, the FDA and foreign
regulatory authorities may impose numerous other requirements on us. FDA
prohibits the marketing of approved medical devices for unapproved uses. In
addition, product approvals can be withdrawn for failure to comply with
regulatory standards or the occurrence of unforeseen problems following initial
marketing. We may not be able to obtain regulatory approvals for our products on
a timely basis, or at all, and delays in receipt of or failure to receive such
approvals, the loss of previously obtained approvals, or failure to comply with
existing or future regulatory requirements

                                       18

<PAGE>


would have a significant negative effect on our financial condition. In
addition, the health care industry in the United States is generally subject to
fundamental change due to regulatory, as well as political, influences. We
anticipate that Congress and state legislatures will continue to review and
assess alternative health care delivery and payment systems. Potential
approaches that have been considered include controls on health care spending
through limitations on the growth of private purchasing groups and price
controls. We cannot predict what impact the adoption of any federal or state
health care reform measures may have on our business.

     We, as well as our distributors and health care providers who purchase our
products and services, are subject to state and federal laws prohibiting
kickbacks or other forms of bribery in the health care industry. We may be
subject to civil and criminal prosecution and penalties if we or our agents
violate any of these laws.

We may be required to pay damages that exceed our insurance coverage for product
liability claims.

     Our business exposes us to potential product liability claims that are
inherent in the testing, production, marketing and sale of medical devices.
While we believe that we are reasonably insured against these risks, we may not
be able to obtain insurance in amounts or scope sufficient to provide us with
adequate coverage against all potential liabilities. Currently, we maintain
product liability insurance in amounts we deem to be reasonable. Some plaintiffs
have sought punitive or exemplary damages against us, which damages, if awarded,
may not be covered by insurance pursuant to state law or the provisions of our
insurance policies. A product liability claim in excess of our insurance
coverage or outside the scope of our coverage would have to be paid out of cash
reserves and would harm our reputation in the industry and our business.

Our products may be subject to product recalls even after receiving FDA
clearance or approval, which would harm our reputation and our business.

     The FDA and similar governmental authorities in other countries have the
authority to request and, in some cases, require the recall of our products in
the event of material deficiencies or defects in design or manufacture. A
government-mandated or voluntary recall by us could occur as a result of
component failures, manufacturing errors or design defects. Any recall of
product would divert managerial and financial resources and harm our reputation
with customers and our business.

Fluctuations in our future operating results may negatively affect the market
price of our common stock.

     Our operating results have fluctuated in the past and can be expected to
fluctuate from time to time in the future. Some of the factors that may cause
these fluctuations include but are not limited to:

 .   the timing and volume of customer orders for both equipment and single-use
     treatment catheters,

 .   the impact of reimbursement changes

 .   costs and expenses related to our effort to protect intellectual property,

 .   the timing of expenditures related to sales and marketing, and research and
     development, and

 .   product availability.

Our business is exposed to risks related to acquisitions and mergers.

     As part of our strategy to commercialize our products, we may acquire one
or more businesses. On October 1, 2000, we purchased the Transurethral Microwave
ThermoTherapy (TUMT or Cooled ThermoTherapy) product line and related patents
and technologies from EDAP TMS S.A., a French corporation and its affiliates. We
may not be able to integrate our business effectively with any other business we
may acquire. The failure to integrate an acquired company or acquired assets
into our operations may cause a drain on our financial and managerial resources,
and thereby have a significant negative effect on our business and financial
results.

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       These difficulties could disrupt our ongoing business, distract our
management and employees or increase our expenses. Furthermore, any physical
expansion in facilities due to an acquisition may result in disruptions that
seriously impair our business. We are not experienced in managing facilities or
operations in geographically distant areas. In addition, our profitability may
suffer because of acquisition-related costs or amortization costs for other
intangible assets. Finally, in connection with any future acquisitions, we may
incur debt or issue equity securities as part or all of the consideration for
the acquired company's assets or capital stock. We may be unable to obtain
sufficient additional financing on favorable terms or at all. Equity issuances
would be dilutive to our existing shareholders.

Our stock price may be volatile and a shareholder's investment could decline in
value.

       Our stock price has fluctuated in the past and is likely to continue to
fluctuate significantly, making it difficult to resell shares at an attractive
price when an investor wants to. The market prices for securities of emerging
companies have historically been highly volatile. Future events concerning us or
our competitors could cause such volatility, including:

 .   actual or anticipated variations in our operating results,

 .   developments regarding government and third-party reimbursement,

 .   changes in government regulation,

 .   government investigation of us or our products,

 .   changes in reimbursement rates or methods affecting our products,

 .   developments concerning proprietary rights,

 .   litigation or public concern as to the safety of our products or our
     competitors' products,

 .   technological innovations or new commercial products by us or our
     competitors,

 .   investor perception of us and our industry, and

 .   general economic and market conditions including market uncertainty.

       In addition, the stock market is subject to price and volume fluctuations
that affect the market prices for companies in general, and
small-capitalization, high-technology companies in particular, which are often
unrelated to the operating performance of these companies. If our operating
results are below the expectations of securities analysts or investors, the
market price of our common stock may fall abruptly and significantly.

Future sales of shares of our common stock may negatively affect our stock
price.

       Future sales of our common stock, including shares issued upon the
exercise of outstanding options or hedging or other derivative transactions with
respect to our stock, could have a significant negative effect on the market
price of our common stock. These sales also might make it more difficult for us
to sell equity securities or equity-related securities in the future at a time
and price that we would deem appropriate.

Anti-takeover provisions in our articles of incorporation may have a possible
negative effect on our stock price.

       Certain provisions of our certificate of incorporation and bylaws may
make it more difficult for a third party to acquire, or discourage a third party
from attempting to acquire control of us. We have in place several anti-takeover
measures that could discourage or prevent a takeover, even if an acquisition
would be beneficial to our shareholders. Our stock option plans contain
provisions that allow for the acceleration of vesting or payments of awards
granted under the plans in the event of specified events that result in a
"change in control." In addition, we have adopted a shareholder rights plan that
would cause substantial dilution to any person or group attempting to acquire
our company on terms not approved in advance by our board of directors.

ITEM 3. QUALITATIVE AND QUANTITATIVE DISCLOSURE ABOUT MARKET RISK

       Our financial instruments include cash and cash equivalents. The fair
value of our financial investment

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portfolio at March 31, 2003, approximated carrying value. Increases and
decreases in prevailing interest rates generally translate into decreases and
increases in the fair value of these instruments. Also, fair values of interest
rate sensitive instruments may be affected by the credit worthiness of the
issuer, prepayment options, relative values of alternative instruments, the
liquidity of the instrument and other general market conditions.

     Market risk was estimated as the potential decrease in fair value resulting
from a hypothetical 1% change in interest rates for the issues contained in the
investment portfolio and was not materially different from the March 31, 2003
carrying value. Due to the nature of our short-term investments, we have
concluded that we do not have a material market risk exposure.

     Our policy is not to enter into derivative financial instruments. We do not
have any significant foreign currency exposure since we do not generally
transact business in foreign currencies. Therefore, we do not have significant
overall currency exposure. In addition, we do not enter into any futures or
forward contracts and, therefore, do not have significant market risk exposure
with respect to commodity prices.

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ITEM 4. CONTROLS AND PROCEDURES

(a) Evaluation of Disclosure Controls and Procedures.

     The Company's Chief Executive Officer, Michael M. Selzer, Jr., and Chief
Financial Officer, Christopher R. Geyen, have reviewed the Company's disclosure
controls and procedures within 90 days prior to the filing of this report. Based
upon this review, these officers believe that the Company's disclosure controls
and procedures are effective in ensuring that material information related to
the Company is made known to them by others within the Company.

(b) Changes in Internal Controls.

     There were no significant changes in the Company's internal controls or in
other factors that could significantly affect these controls during the quarter
covered by this report or from the end of the reporting period to the date of
this Form 10-Q.

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PART II - OTHER INFORMATION

ITEM 1. LEGAL PROCEEDINGS

     Our business exposes us to product liability claims that are inherent in
the testing, production, marketing and sale of medical devices. Management
believes any losses that may occur from these matters are adequately covered by
insurance, and the ultimate outcome of these matters will not have a material
effect on the financial position or results of operations of the Company. In
addition, the Company is involved in the litigation set forth below.

Urologix v. ProstaLund AB et al.

     In March 2002, we filed a patent infringement action against ProstaLund AB,
ProstaLund Operations AB, and Circon Corporation a/k/a ACMI Corporation in the
United States District Court for the Eastern District of Wisconsin (and by a
later amended complaint) alleging that the defendants' products infringed two
United States Patents that were assigned to us: U.S. Patent No. 5,234,004 ("004
Patent") and U.S. Patent No. 5,509,929 the ("929 Patent"). We sought a
preliminary injunction prohibiting the manufacture, use, sale, or offer for sale
of the "ProstaLund Feedback Treatment" and an unspecified amount of damages. The
defendants counterclaimed, alleging that they do not infringe our patents, that
our patents are invalid and that we have "marked" our products as "patented" in
a manner that violates patent law. The defendants are also seeking recovery of
their attorneys' fees.

     In October 2002, the Court issued two separate Orders in this case. In an
Order dated October 10, 2002, the Court determined that the `004 patent was not
entitled to the benefit of an earlier filing date of a parent application and as
a result was invalid. In an Order dated October 16, 2002, the Court denied our
motion for a preliminary injunction on the `929 patent.

     Subsequent to the Court Action in November 2002, in response to our
request, In November, 2002, the United States Patent and Trademark Office
("PTO") issued an office action granting Urologix the benefit of the earlier
office action on the `004 patent. In light of the PTO office action, we filed a
motion with the Court in November 2002 requesting that the Court vacate the
October 10, 2002 Order determining the `004 patent was invalid. In April 2003,
the Court denied our motion to vacate the October 10, 2002 Order.

     We are evaluating our options in connection with the lawsuit and are
preparing for a trial on the merits of the infringement claims of the `929
patent which has been scheduled by the Court for January 2004. See "Factors that
may affect our future results and the trading price of our Common Stock - We are
dependent on adequate protection of our patent and proprietary rights."

ITEM 5. SUBMISSION OF MATTERS TO A VOTE OF SECURITY HOLDERS

None

                                       23

<PAGE>

ITEM 6.  EXHIBITS AND REPORTS ON FORM 8-K

(a)  Exhibits

     Exhibit 99.1 Certification of Chief Executive Officer Pursuant to Section
       906 of the Sarbanes-Oxley Act of 2002
     Exhibit 99.2 Certification of Chief Financial Officer Pursuant to Section
       906 of the Sarbanes-Oxley Act of 2002

(b) Report on Form 8-K
    a. No reports on Form 8-K were filed during the period ended March 31, 2003

                                       24

<PAGE>


                                   SIGNATURES

Pursuant to the requirements of the Securities Exchange Act of 1934, the
Registrant has duly caused this report to be signed on its behalf by the
undersigned thereunto duly authorized.

Date May 14, 2003

Urologix, Inc.

(Registrant)

/s/ Michael M. Selzer, Jr.
--------------------------
Michael M. Selzer, Jr.
President and Chief Executive Officer
(Duly Authorized Officer)

/s/ Christopher R. Geyen
------------------------

Christopher R. Geyen
Vice President and Chief Financial Officer
(Principal Financial Officer)

                                       25

<PAGE>

                                 CERTIFICATIONS

I, Michael M. Selzer, Jr., certify that:

1. I have reviewed this quarterly report on Form 10-Q of Urologix, Inc.;

2. Based on my knowledge, this quarterly report does not contain any untrue
statement of a material fact or omit to state a material fact necessary to make
the statements made, in light of the circumstances under which such statements
were made, not misleading with respect to the period covered by this quarterly
report;

3. Based on my knowledge, the financial statements, and other financial
information included in this quarterly report, fairly present in all material
respects the financial condition, results of operations and cash flows of the
registrant as of, and for, the periods presented in this quarterly report;

4. The registrant's other certifying officers and I are responsible for
establishing and maintaining disclosure controls and procedures (as defined in
Exchange Act Rules 13a-14 and 15d-14) for the registrant and we have:

          a) designed such disclosure controls and procedures to ensure that
          material information relating to the registrant, including its
          consolidated subsidiaries, is made known to us by others within those
          entities, particularly during the period in which this quarterly
          report is being prepared;

          b) evaluated the effectiveness of the registrant's disclosure controls
          and procedures as of a date within 90 days prior to the filing date of
          this quarterly report (the "Evaluation Date"); and

          c) presented in this quarterly report our conclusions about the
          effectiveness of the disclosure controls and procedures based on our
          evaluation as of the Evaluation Date;

5. The registrant's other certifying officers and I have disclosed, based on our
most recent evaluation, to the registrant's auditors and the audit committee of
registrant's board of directors (or persons performing the equivalent function):

          a) all significant deficiencies in the design or operation of internal
          controls which could adversely affect the registrant's ability to
          record, process, summarize and report financial data and have
          identified for the registrant's auditors any material weaknesses in
          internal controls; and

          b) any fraud, whether or not material, that involves management or
          other employees who have a significant role in the registrant's
          internal controls; and

6. The registrant's other certifying officers and I have indicated in this
quarterly report whether or not there were significant changes in internal
controls or in other factors that could significantly affect internal controls
subsequent to the date of our most recent evaluation, including any corrective
actions with regard to significant deficiencies and material weaknesses.

Date:    May 14, 2003                     /s/ Michael M. Selzer, Jr.
       --------------                     --------------------------
                                          Michael M. Selzer, Jr.
                                          President and Chief Executive Officer

                                       26

<PAGE>

I, Christopher R. Geyen, certify that:

1. I have reviewed this quarterly report on Form 10-Q of Urologix, Inc.

2. Based on my knowledge, this quarterly report does not contain any untrue
statement of a material fact or omit to state a material fact necessary to make
the statements made, in light of the circumstances under which such statements
were made, not misleading with respect to the period covered by this quarterly
report;

3. Based on my knowledge, the financial statements, and other financial
information included in this quarterly report, fairly present in all material
respects the financial condition, results of operations and cash flows of the
registrant as of, and for, the periods presented in this quarterly report;

4. The registrant's other certifying officers and I are responsible for
establishing and maintaining disclosure controls and procedures (as defined in
Exchange Act Rules 13a-14 and 15d-14) for the registrant and we have:

          a) designed such disclosure controls and procedures to ensure that
          material information relating to the registrant, including its
          consolidated subsidiaries, is made known to us by others within those
          entities, particularly during the period in which this quarterly
          report is being prepared;

          b) evaluated the effectiveness of the registrant's disclosure controls
          and procedures as of a date within 90 days prior to the filing date of
          this quarterly report (the "Evaluation Date"); and

          c) presented in this quarterly report our conclusions about the
          effectiveness of the disclosure controls and procedures based on our
          evaluation as of the Evaluation Date;

5. The registrant's other certifying officers and I have disclosed, based on our
most recent evaluation, to the registrant's auditors and the audit committee of
registrant's board of directors (or persons performing the equivalent function):

          a) all significant deficiencies in the design or operation of internal
          controls which could adversely affect the registrant's ability to
          record, process, summarize and report financial data and have
          identified for the registrant's auditors any material weaknesses in
          internal controls; and

          b) any fraud, whether or not material, that involves management or
          other employees who have a significant role in the registrant's
          internal controls; and

6. The registrant's other certifying officers and I have indicated in this
quarterly report whether or not there were significant changes in internal
controls or in other factors that could significantly affect internal controls
subsequent to the date of our most recent evaluation, including any corrective
actions with regard to significant deficiencies and material weaknesses.

Date:   May 14, 2003                       /s/ Christopher R. Geyen
       -------------                       ------------------------
                                           Christopher R. Geyen
                                           Vice President and
                                           Chief Financial Officer

                                       27
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================================================================================

                                  UNITED STATES
                       SECURITIES AND EXCHANGE COMMISSION
                             WASHINGTON, D.C. 20549

                                 ---------------

                                    FORM 10-Q

                                 ---------------

[x] QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE
ACT OF 1934 FOR THE QUARTERLY PERIOD ENDED MARCH 31, 2003

                                       or

[_] TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES
                              EXCHANGE ACT OF 1934

         For the transaction period from ____________ to _______________

                         Commission File Number 0-28414

                                 ---------------

                                 UROLOGIX, INC.
             (Exact name of registrant as specified in its charter)

                   Minnesota                         41-1697237
         (State or other jurisdiction of          (I.R.S. Employer
          incorporation or organization)         Identification No.)

                 14405 21st Avenue North, Minneapolis, MN 55447
                    (Address of principal executive offices)

       Registrant's telephone number, including area code: (763) 475-1400

                                 ---------------

Indicate by check mark whether the registrant is an accelerated filer (as
defined in Rule 12b-2) of the Exchange Act.

                                 Yes [_] No [x]

Indicate by check mark whether the registrant (1) has filed all reports required
to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during
the preceding 12 months (or for such shorter period that the registrant was
required to file such reports), and (2) has been subject to such filing
requirements for the past 90 days.

                                 Yes [x] No [_]

As of April 30, 2003, the Company had outstanding 13,915,968 shares of common
stock, $.01 par value.

================================================================================
PART I - FINANCIAL INFORMATION
ITEM 1. FINANCIAL STATEMENTS

                                 Urologix, Inc.
                            Condensed Balance Sheets
                      (In thousands, except per share data)
March 31,    June 30,
                                                                            2003         2002
------------------------------------------------------------------------ ----------- ----------
  ASSETS                                                                 (unaudited)     (*)
Current assets:
     Cash and cash equivalents                                           $     603    $   1,604
     Available-for-sale investments                                          5,573       11,109
     Accounts receivable, net of allowance of $370 and $483                  2,111        4,554
     Inventories, net                                                        4,670        2,424
     Prepaids and other current assets                                         503          880
------------------------------------------------------------------------ ---------   ----------
          Total current assets                                              13,460       20,571
------------------------------------------------------------------------ ---------   ----------
  Property and equipment:
     Machinery, equipment and furniture                                      9,708        8,227
     Less accumulated depreciation                                          (5,823)      (5,007)
------------------------------------------------------------------------ ---------   ----------
          Property and equipment, net                                        3,885        3,220
  Other assets                                                               2,480        2,676
  Goodwill, net                                                             10,193       10,193
  Other intangible assets, net                                               9,279        9,777
------------------------------------------------------------------------ ---------   ----------
          Total assets                                                   $  39,297    $  46,437
======================================================================== =========   ==========

  LIABILITIES AND SHAREHOLDERS' EQUITY
  Current liabilities:
     Accounts payable                                                    $   1,804    $   2,117
     Accrued compensation                                                      578          686
     Other accrued expenses                                                  1,405        1,357
     Current portion of lease obligation                                       489          513
     Deferred income                                                         1,703        1,891
     Term debt                                                                 575            -
------------------------------------------------------------------------ ---------   ----------
          Total current liabilities                                          6,554        6,564
------------------------------------------------------------------------ ---------   ----------
  Long-term liabilities:
     Term debt                                                                   -          575
     Long-term lease obligation                                                  -          351
------------------------------------------------------------------------ ---------   ----------
          Total long-term liabilities                                            -          926
------------------------------------------------------------------------ ---------   ----------
   COMMITMENTS AND CONTINGENCIES (Note 10)
 Shareholders' equity:
Common stock, $.01 par value, 25,000 shares authorized;
 13,916 and 13,902 shares issued and outstanding                               139          139
Additional paid-in capital                                                 108,504      108,449
Accumulated deficit                                                        (75,988)     (69,680)
Accumulated other comprehensive income                                          88           39
------------------------------------------------------------------------ ---------   ----------
          Total shareholders' equity                                        32,743       38,947
------------------------------------------------------------------------ ---------   ----------
          Total liabilities and shareholders' equity                     $  39,297    $  46,437
======================================================================== =========   ==========
(*) The Balance Sheet at June 30, 2002 has been derived from the audited
     financial statements at that date but does not include all of the
     information and footnotes required by generally accepted accounting
     principles for complete financial statements.

  The accompanying notes to financial statements are an integral part of these
                                  statements.

                                       2
Urologix, Inc.
                       Condensed Statements of Operations
                      (In thousands, except per share data)
                                   (Unaudited)
Three Months Ended              Nine Months Ended
                                                        March 31,                      March 31,
                                               ----------------------------- ---------------------------
                                                 2003              2002        2003              2002
--------------------------------------------------------------------------------------------------------
Sales                                          $ 4,558           $ 6,027     $  13,606     $      16,468
Cost of goods sold                               1,802             2,114         5,162             5,763
--------------------------------------------------------------------------------------------------------
Gross profit                                     2,756             3,913         8,444            10,705
--------------------------------------------------------------------------------------------------------

Costs and expenses:
Selling, general and administrative              3,739             2,962        11,509             8,548
Research and development                           927               930         2,864             3,127
Amortization of intangible assets                  166               166           498               498
--------------------------------------------------------------------------------------------------------
Total costs and expenses                         4,832             4,058        14,871            12,173
--------------------------------------------------------------------------------------------------------
Operating loss                                  (2,076)             (145)       (6,427)           (1,468)
Interest income, net                                 8                50           119               170
--------------------------------------------------------------------------------------------------------
Net loss                                       $(2,068)          $   (95)    $  (6,308)     $     (1,298)
========================================================================================================

========================================================================================================
Basic and diluted net loss per common
share                                          $ (0.15)          $ (0.01)    $   (0.45)     $      (0.09)
========================================================================================================

Basic and diluted weighted average number of
common shares outstanding                       13,916            13,867        13,914            13,785
                                               -------------------------     ---------------------------
The accompanying notes to financial statements are an integral part of these
                                  statements.

                                       3
Urologix, Inc.
                       Condensed Statements of Cash Flows
                                 (In thousands)
                                   (Unaudited)
Nine Months Ended
                                                                           March 31,
                                                                      ----------------------
                                                                          2003       2002
--------------------------------------------------------------------- ----------  ----------
Operating Activities:
      Net loss                                                           ($6,308)    ($1,298)
 Adjustments to reconcile net loss to net cash used for operating
  activities:
    Depreciation and amortization                                          1,510       1,246
    Value of options issued to consultants                                     -          38
    Provision for bad debts                                                   10         151
    Change in operating items:
     Accounts receivable                                                   2,433      (1,587)
     Inventories                                                          (3,651)     (1,674)
     Prepaids and other assets                                               377         (57)
     Accrued expenses and accounts payable                                  (561)        345
--------------------------------------------------------------------- ----------  ----------
    Net cash used for operating activities                                (6,190)     (2,836)
--------------------------------------------------------------------- ----------  ----------

Investing Activities:
  Purchase of property and equipment, net                                    (76)       (156)
   Proceeds from sale of available-for-sale investments, net               5,585       3,195
--------------------------------------------------------------------- ----------  ----------
    Net cash provided by investing activities                              5,509       3,039
--------------------------------------------------------------------- ----------  ----------

Financing Activities:
   Payments made on capital lease obligations                               (375)       (306)
   Proceeds from exercise of stock options                                    55         898
--------------------------------------------------------------------- ----------  ----------
    Net cash (used for) provided by financing activities                    (320)        592
--------------------------------------------------------------------- ----------  ----------

Net increase (decrease) in cash and cash equivalents                      (1,001)        795
Cash and cash equivalents:
  Beginning of period                                                      1,604          26
--------------------------------------------------------------------- ----------  ----------
  End of period                                                       $      603  $      821
===================================================================== ==========  ==========

Supplemental cash-flow information

     Cash paid during the period for interest                         $      108  $      204

     Net transfer of inventory to property and equipment              $    1,405  $      594
The accompanying notes to financial statements are an integral part of these
                                  statements.

                                       4
Urologix, Inc.
                     Notes to Condensed Financial Statements
                                 March 31, 2003
                                   (Unaudited)

1. Basis of presentation

     The accompanying unaudited condensed financial statements of Urologix, Inc.
(the "Company" or "Urologix") have been prepared in accordance with generally
accepted accounting principles for interim financial information and with the
instructions for Form 10-Q and Article 10 of Regulation S-X. The balance sheet
as of March 31, 2003, the statements of operations for the three and nine months
ended March 31, 2003 and 2002, and the statements of cash flows for the nine
months ended March 31, 2003 and 2002, are unaudited but include all adjustments
(consisting of normal recurring adjustments) necessary for a fair presentation
of the financial position at such dates and the operating results and cash flows
for those periods. Certain information normally included in financial statements
and related footnotes prepared in accordance with generally accepted accounting
principles has been condensed or omitted pursuant to the rules and regulations
of the Securities and Exchange Commission. The accompanying financial statements
should be read in conjunction with the financial statements and notes included
in Urologix' annual report on Form 10-K for the year ended June 30, 2002, filed
with the Securities and Exchange Commission.

     Results for any interim period shown in this report are not necessarily
indicative of results to be expected for any other interim period or for the
entire year. Certain prior year amounts have been reclassified to conform to
current year presentation.

2. New Accounting Pronouncements

     In July 2002, Statement of Financial Accounting Standards No. 146,
"Accounting for Costs Associated with Exit or Disposal Activities," (SFAS No.
146) was issued and is effective for activities beginning after December 31,
2002. SFAS No. 146 requires, among other things, that costs associated with an
exit activity (including restructuring and employee and contract termination
costs) or with a disposal of long-lived assets be recognized when the liability
has been incurred and can be measured at fair value. We adopted the provisions
of SFAS No. 146 on January 1, 2003. SFAS No. 146 will have an impact on any
restructuring activities initiated after December 31, 2002.

     In December 2002, the FASB issued SFAS No. 148, Stock Compensation. SFAS
No. 148 provides alternative methods of transition for a voluntary change to the
fair value based method of accounting for stock-based employee compensation. In
addition, SFAS No. 148 amends the disclosure requirements of SFAS No. 123 to
require prominent disclosures in both annual and interim financial statements
about the method of accounting for stock-based employee compensation and the
effect of the method used on reported results. We are making the required
interim disclosures effective with the quarter ended March 31, 2003.

3. Use of Estimates

     The preparation of financial statements in conformity with accounting
principles generally accepted in the United States of America requires
management to make estimates and assumptions that affect the reported amounts of
assets and liabilities and disclosure of contingent assets and liabilities at
the date of the financial statements and the reported amounts of revenue and
expenses during the reporting period. Actual results could differ from those
estimates.

                                       5
Urologix, Inc.
                     Notes to Condensed Financial Statements
                                 March 31, 2003
                                   (Unaudited)

4. Basic and diluted net loss per share

     Basic and diluted net loss per common share was computed by dividing the
net loss by the weighted average number of shares of common stock outstanding
during the periods presented. The following table summarizes the common stock
equivalents that were excluded from the calculation of diluted earnings per
share as the effect would be antidilutive.

                                        March 31, 2003            March 31, 2002
                                        --------------            --------------
        Three Months Ended                  8,647                   879,261
        Nine Months Ended                  56,712                   967,652

5. Inventories

Net inventories consisted of the following as of (in thousands):

                                        March 31, 2003          June 30, 2002
-----------------------------------------------------------------------------
Raw materials                            $       1,511            $       936

Work in process                                    484                    415

Finished goods                                   2,675                  1,073
-----------------------------------------------------------------------------
  Total inventories                      $       4,670            $     2,424
=============================================================================

6. Goodwill and other intangible assets

     Intangible assets consisting of acquired developed technologies and
customer base are amortized over useful lives of 15 years and 14 years,
respectively. We do not amortize the acquired trademarks as they are considered
indefinite-lived intangible assets. Long-lived assets, including amortizing
intangibles, are reviewed for impairment whenever events or changes in
circumstances indicate that the carrying amount of an asset may not be
recoverable. Recoverability of assets to be held and used is measured by a
comparison of the carrying amount of an asset to future net cash flows expected
to be generated by the asset. Following a review, if such assets are considered
to be impaired, the impairment to be recognized is measured by the amount by
which the carrying amount of the assets exceeds the fair value of the assets.
Assets to be disposed of are reported at the lower of the carrying amount or
fair value less costs to sell.

     With the adoption of SFAS 142, goodwill is no longer being amortized
against earnings and goodwill balances are subject to an impairment review on an
annual basis or sooner if indicators of potential impairment exists. The test
for impairment requires us to make several estimates about fair value, most of
which are based on total market capitalization as compared to the carrying value
of our net assets. If our total market capitalization is at or below the
carrying value of our net assets for several quarters, it may prompt us to
engage a third party valuation firm to perform a valuation to assess whether our
goodwill is impaired. Amortization of intangible assets was $166,000 and
$498,000 for the three and nine-month periods ended March 31, 2003. Future
annual amortization expense for acquired intangible assets is expected to be
$664,000 for each of the next five fiscal years.

                                       6
Urologix, Inc.
                     Notes to Condensed Financial Statements
                                 March 31, 2003
                                   (Unaudited)

     Balances of acquired intangible assets were as follows (in thousands):
As of March 31, 2003
                                                        ------------------------------------------
                                                           Carrying      Accumulated
                                                            Amount      Amortization       Net
--------------------------------------------------------------------------------------------------
Amortizing intangibles:

       Developed technologies                                 $7,500          $1,250        $6,250

       Customer base                                           2,300             411         1,889
                                                               -----             ---         -----
           Subtotal                                            9,800           1,661         8,139

     Non-amortizing intangibles and goodwill:

        Goodwill                                              10,716             523        10,193

        Trademarks                                             1,200              60         1,140
                                                               -----              --         -----
           Subtotal                                           11,916             583        11,333
--------------------------------------------------------------------------------------------------
     Total acquired intangible assets                        $21,716          $2,244       $19,472
==================================================================================================
7. Comprehensive Loss

     Comprehensive loss includes all changes in equity during a period except
those resulting from investments by and distributions to shareholders. Our
comprehensive loss represents net loss adjusted for unrealized gains (losses) on
available-for-sale investments.

8. Warranty

     Sales of our procedure kits and Cooled ThermoTherapy systems are subject to
limited warranty guarantees. Procedure kit guarantees are limited to the
disposable's printed date of expiration and system guarantees typically extend
for one year after the date of installation or 15 months after the date of
delivery, whichever is earlier. Standard warranty terms are included in customer
contracts. Under the terms of these warranties, we are obligated to repair or
replace any components or parts we deem defective in workmanship or materials.
We reserve the right to reject warranty claims where we determine that failure
is due to normal wear, customer modifications, improper maintenance or misuse.
We record warranty provision monthly based on an estimated warranty expense
percentage applied to current period revenue. The percentage applied reflects
historical warranty incidence over the preceding twelve-month period. Both the
experience percentage and the warranty liability are evaluated on an ongoing
basis for adequacy. Warranty provisions and claims for the nine-month period
ended March 31, 2003 were as follows (in thousands):

      Nine Months       Beginning       Warranty        Warranty       Ending
         Ended           Balance       Provisions        Claims       Balance
   ----------------- --------------- --------------- -------------- -----------

    March 31, 2003         $203           $124           ($183)         $144

                                       7
Urologix, Inc.
                     Notes to Condensed Financial Statements
                                 March 31, 2003
                                   (Unaudited)

9. Stock Options

     We account for stock options under the provisions of Accounting Principles
Board Opinion 25, under which no compensation cost has been recognized. The
following pro forma net loss and net loss per share have been determined as if
we had used the fair value method of accounting for our stock option grants and
employee stock purchase plan share elections consistent with the method of SFAS
123, "Accounting for Stock-Based Compensation". Under this method, compensation
expense is recognized over the applicable vesting periods and is based on the
shares under option and their related fair values on the grant date.
(in thousands, except per share data)
                                         ------------------------------------------------------------
                                                Three months ended                Nine months ended
                                                    March 31,                        March 31,
                                         ------------------------------   ---------------------------
                                             2003            2002             2003            2002
                                         -----------      -------------   -----------   -------------
Net loss (as reported)                $    (2,068)     $         (95)  $    (6,308)  $      (1,298)
   Non-cash compensation expense                (730)              (815)       (2,073)         (2,067)
                                              ------               ----        ------          ------
   Pro forma                             $    (2,798)     $        (910)  $    (8,381)  $      (3,365)

   Net loss per share (as reported)      $     (0.15)     $       (0.01)  $     (0.45)  $       (0.09)
   Non-cash compensation expense               (0.05)             (0.06)        (0.15)          (0.15)
                                              ------              -----        ------          ------
   Pro forma                             $     (0.20)     $       (0.07)  $     (0.60)  $       (0.24)
10. Legal Proceedings

     Our business exposes us to product liability claims that are inherent in
the testing, production, marketing and sale of medical devices. Management
believes any losses that may occur from these matters are adequately covered by
insurance, and the ultimate outcome of these matters will not have a material
effect on the financial position or results of operations of the Company. In
addition, the Company is involved in the litigation set forth below.

Urologix v. ProstaLund AB et al.

     In March 2002, we filed a patent infringement action against ProstaLund AB,
ProstaLund Operations AB, and Circon Corporation a/k/a ACMI Corporation in the
United States District Court for the Eastern District of Wisconsin (and by a
later amended complaint) alleging that the defendants' products infringed two
United States Patents that were assigned to us: U.S. Patent No. 5,234,004 ("004
Patent") and U.S. Patent No. 5,509,929 the ("929 Patent"). We sought a
preliminary injunction prohibiting the manufacture, use, sale, or offer for sale
of the "ProstaLund Feedback Treatment" and an unspecified amount of damages. The
defendants counterclaimed, alleging that they do not infringe our patents, that
our patents are invalid and that we have "marked" our products as "patented" in
a manner that violates patent law. The defendants are also seeking recovery of
their attorneys' fees.

     In October 2002, the Court issued two separate Orders in this case. In an
Order dated October 10, 2002, the Court determined that the `004 patent was not
entitled to the benefit of an earlier filing date of a parent application and as
a result was invalid. In an Order dated October 16, 2002, the Court denied our
motion for a preliminary injunction on the `929 patent.

                                       8
Urologix, Inc.
                     Notes to Condensed Financial Statements
                                 March 31, 2003
                                   (Unaudited)

     Subsequent to the Court Action, in November 2002 in response to our
request, the United States Patent and Trademark Office ("PTO") issued an office
action granting Urologix the benefit of the earlier office action on the `004
patent. In light of the PTO office action, we filed a motion with the Court in
November 2002 requesting that the Court vacate the October 10, 2002 Order
determining the `004 patent was invalid. In April 2003, the Court denied our
motion to vacate the October 10, 2002 Order.

     We are evaluating our options in connection with the lawsuit and are
preparing for a trial on the merits of the infringement claims of the `929
patent which has been scheduled by the Court for January 2004.

                                        9
ITEM 2. MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS
OF OPERATIONS

     The following is a discussion and analysis of Urologix' financial condition
and results of operations for the three and nine-month periods ended March 31,
2003 and 2002. This section should be read in conjunction with the condensed
financial statements and related notes in Item 1 of this report and Urologix'
Annual Report on Form 10-K for the year ended June 30, 2002, which has been
filed with the Securities and Exchange Commission.

              Cautionary Note Regarding Forward-Looking Statements

     This Management's Discussion and Analysis of Financial Condition and
Results of Operations contains, in addition to historical information,
forward-looking statements that are based on our current expectations, beliefs,
intentions or future strategies. These statements are subject to risks and
uncertainties that could cause actual results to differ materially from the
statements, including the extent to which the physicians performing Cooled
ThermoTherapy procedures are able to obtain third-party reimbursement, changes
in the reimbursement environment, market acceptance and the rate of adoption of
Cooled ThermoTherapy for the treatment of benign prostatic hyperplasia (BPH) by
the medical community, our ability to successfully protect our intellectual
property rights, the ability of our key suppliers to provide product, the impact
of competitive treatments, products and pricing, and the effectiveness of our
sales and marketing organization. We caution readers not to place undue reliance
on any of these forward-looking statements, which speak only as of the date
made. A detailed discussion of risks and uncertainties may be found below in
"Factors That May Affect Our Future Results and The Trading Price of Our Common
Stock" and in our Annual Report on Form 10-K for the year ended June 30, 2002.

OVERVIEW

     Urologix, Inc., based in Minneapolis, Minnesota, develops, manufactures and
markets minimally invasive medical products for the treatment of urological
disorders.

     We have developed and offer non-surgical, catheter-based therapies that use
a proprietary cooled microwave technology for the treatment of BPH, a disease
that dramatically affects more than 23 million men worldwide by causing adverse
changes in urinary voiding patterns. We market our products under the Targis and
Prostatron names. Both systems utilize Cooled ThermoTherapy, a targeted
microwave energy combined with a unique cooling mechanism that protects healthy
tissue and enhances patient comfort while providing safe, effective, lasting
relief from the symptoms of BPH. Cooled ThermoTherapy can be performed without
anesthesia or intravenous sedation and, as a result, can be performed in a
physician's office or an outpatient clinic. We believe Cooled ThermoTherapy
provides an efficacious, safe and cost-effective solution for BPH that is
superior to medication without the complications and side effects inherent in
surgical procedures. We generate revenue from the sale of Cooled ThermoTherapy
systems and the related disposable procedure kits.

     Third-party reimbursement is essential to acceptance of the Cooled
ThermoTherapy procedure. We estimate that more than 50% of patients who receive
treatment in the United States are eligible for Medicare coverage, making
Medicare reimbursement critical for widespread market acceptance in the United
States. The remaining patients will either be covered by private insurers,
including traditional indemnity health insurers and managed care organizations,
or they will be private-paying patients.

     The rate of Medicare reimbursement for Cooled ThermoTherapy is dependent on
the site of service. Medicare reimburses outpatient hospital-based procedures
with a fixed rate under a "prospective payment system." Under this method of
reimbursement, a hospital receives a fixed reimbursement for each procedure
performed in its facility.

     Medicare began to reimburse for Cooled ThermoTherapy procedures performed
in a physician's office on a fixed-rate basis on January 1, 2001. The change was
a significant milestone, as it marked the first time patients were covered
directly by Medicare for in-office Cooled ThermoTherapy procedures.

                                       10
Our goal is to grow Cooled ThermoTherapy as a standard of care for the
treatment of BPH. Our business strategy to achieve this goal is to (i) increase
market awareness of Cooled ThermoTherapy, (ii) create access to Cooled
ThermoTherapy through both the sale and long-term use arrangements of Cooled
ThermoTherapy systems and (iii) increase the use of Cooled ThermoTherapy by
physicians who already have access to a Cooled ThermoTherapy System.

     We expect to continue to incur operating losses as we fund marketing and
sales activities and invest in our effort to protect our intellectual property.
Our future profitability will be dependent upon, among other factors, our
success in achieving market acceptance of the Cooled ThermoTherapy procedures in
the physician's office, our success in obtaining and maintaining necessary
regulatory clearances, our ability to manufacture at the volumes and quantities
the market requires, and the extent to which Medicare and other health care
payers continue to reimburse costs of Cooled ThermoTherapy procedures performed
in hospitals, ambulatory surgery centers and physicians' offices and the amount
of reimbursement provided.

Critical Accounting Policies:

     We set forth below those material accounting policies that we believe are
the most critical to an investor's understanding of our financial results and
condition and require complex management judgment.

Revenue Recognition

     We recognize revenue in accordance with Securities and Exchange Commission
Staff Accounting Bulletin 101. We recognize revenue from the sale of Cooled
ThermoTherapy systems upon acceptance by the customer. We recognize revenue from
disposable product sales at the time of shipment. In addition to sales of our
Cooled ThermoTherapy systems, we place our Cooled ThermoTherapy systems with
urology groups under a variety of programs for both evaluation and long-term
use. These programs are designed to expand our installed base, and thus increase
the market for our disposable catheters. Under these programs, we generally
charge a higher price for each disposable to include the use of our Cooled
ThermoTherapy system by the urology group. Revenue for warranty service
contracts is deferred and recognized on a straight-line basis over the contract
period. We record a provision for estimated sales returns on product sales in
the same period as the related revenue is recorded. The provision for estimated
sales returns is based on historical sales returns, analysis of credit memo data
and other known factors. If the historical data we use to calculate this
estimate does not properly reflect future returns, our revenues could be
overstated.

Product Warranty

     We record a liability for warranty claims at the time of sale. The amount
of the liability is based on the trend in the historical ratio of product
failure rates, material usage and service delivery costs to sales, the
historical length of time between the sale and resulting warranty claim and
other factors. Should actual product failure rates, material usage or repair
costs differ from our estimates, revisions to the estimated warranty liability
would be required.

Inventory Carrying Value and Related Allowance for Excess and Obsolete
Inventory.

     On a periodic basis we analyze the level of inventory on hand, its cost in
relation to market value and estimated customer requirements to determine
whether write-downs for shrinkage, excess, obsolete or slow moving inventory are
required. The amounts of these reserves are based upon average selling prices,
historical experience and forecasted demand. Our reserve requirements could be
materially different if average selling prices decline or demand for our
products decreased because of competitive conditions or market acceptance, or if
products become obsolete because of advancements in the industry.

Allowance for Doubtful Accounts

     We maintain allowances for doubtful accounts for estimated losses resulting
from the inability of our customers to make required payments. This allowance is
regularly evaluated by us for adequacy by taking into consideration factors such
as past experience, credit quality of the customer base, age of the receivable
balances, both individually and in the aggregate, and current economic
conditions that may affect a customer's ability to pay. If the financial
condition of our customers were to deteriorate, resulting in an impairment of
their ability to make payments, additional allowances may be required.

                                       11
Valuation of Long-Lived and Intangible Assets and Goodwill

     In fiscal 2002, we adopted Statement of Financial Accounting Standards
(SFAS) 142, "Goodwill and Other Intangible Assets," and as a result, we have
ceased to amortize approximately $10.2 million of goodwill and $1.1 million of
trademarks. Goodwill is tested for impairment annually or more frequently if
changes in circumstance or the occurrence of events suggests impairment may
exist. The test for impairment requires us to make several estimates about fair
value, most of which are based on projected future cash flows. Our estimates
associated with the goodwill impairment tests are considered critical, due to
the amount of goodwill recorded on our balance sheet and the judgment required
in determining fair value amounts, including projected future cash flows.

     Other intangible assets consist of developed technology, customer base and
trademarks. Developed technology and customer base are amortized using the
straight-line method over their estimated useful lives of 15 and 14 years,
respectively. The trademark asset is considered to be an intangible asset with
an indefinite useful life, and it will not be amortized until its useful life is
determined to be no longer indefinite. We review these definite and
indefinite-lived intangible assets for impairment annually or as changes in
circumstance or the occurrence of events suggests the remaining value may not be
recoverable.

RESULTS OF OPERATIONS

Net Sales

     Net sales decreased to $4.6 million and $13.6 million for the three and
nine-month periods ended March 31, 2003, from $6.0 million and $16.5 million
during the same periods in the prior fiscal year. The decrease in revenue in
both the three and nine-month periods was caused by a decrease in the number of
Cooled ThermoTherapy systems sold as well as a decrease in the average per unit
selling price of these systems and a decrease in the number of procedure kits
sold. Sales of disposable procedure kits accounted for nearly 90% of total
revenue in the first nine months of fiscal 2003, compared to approximately 75%
in the same period in fiscal 2002. Both the volume of equipment sold and the
sale price of our equipment were affected by competitive offerings in our
marketplace. In addition, our effort to expand our domestic sales force during
the first six months of fiscal 2003 has limited the growth of procedure kit
sales. During the expansion, both our sales management and our experienced sales
representatives invested a significant amount of time recruiting and training
new team members which slowed work with existing customers and the effort to
generate new business. We completed the expansion of our sales organization in
December 2002 and have refocused efforts on maintaining and increasing sales. At
March 31, 2003, we had an installed base of 346 Cooled ThermoTherapy systems,
including the units that are being used by customers pursuant to our evaluation
and long-term use programs.

     In January 2003, Medicare published new rates for office-based microwave
treatments, including Cooled ThermoTherapy. These rates became effective for
office based microwave treatment claims processed by Medicare on or after March
1, 2003. The new rates published by Medicare reflect a decrease of approximately
30% from previous office-based reimbursement rates. We do not know what impact
this rate change will ultimately have on our business. See "Factors That May
Affect Our Future Results and The Trading Price of Our Common Stock-Third-party
reimbursement is critical to market acceptance of our products."

Cost of Goods Sold and Gross Profit

     Cost of goods sold includes raw materials, labor, overhead and royalties
incurred in connection with the production of our Cooled ThermoTherapy control
units and disposable procedure kits. Cost of goods sold for the three and
nine-month periods ended March 31, 2003 were $1.8 million and $5.2 million, down
from $2.1 million and $5.8 million during the same periods of fiscal 2002. The
decrease resulted from a decrease in the number of Cooled ThermoTherapy systems
sold as well as a decrease in the number of procedure kits sold.

     Gross profit as a percentage of sales for the three and nine-month periods
ended March 31, 2003 decreased to 60% and 62% respectively, from 65% in both the
three and nine-month periods ended March 31, 2002. The decreases have resulted
primarily from the drop in the average per unit selling price of our Cooled
ThermoTherapy systems.

                                       12
Selling, General & Administrative

     Selling, general and administrative expenses increased to $3.7 million and
$11.5 million for the three and nine-month periods ended March 31, 2003, from
$3.0 million and $8.5 million in the same periods of fiscal year 2002. The
increased expenses are primarily attributable to legal expenses related to a
patent infringement suit we filed to protect our intellectual property as well
as the expansion of our direct sales force. We expect to continue to incur legal
expenses in connection with our efforts to protect our intellectual property.

Research and Development

     Research and development expenses, which include expenditures for product
development, regulatory compliance and clinical studies, decreased to $927,000
and $2.9 million from $930,000 and $3.1 million for the three and nine-month
periods ended March 31, 2003 and 2002, respectively. The decrease in expenses in
both periods resulted primarily from decreased expenditures on product
development activities, partially offset by increased clinical trial expenses.
We expect quarterly research and development expenses for the fourth quarter of
the fiscal year to be lower than the current quarter.

Amortization of intangible assets

     Amortization of intangible assets was $166,000 and $498,000 for both the
three and nine-month periods ended March 31, 2003 and 2002, respectively. The
amortization of intangible assets is a result of the purchase of the Prostatron
Cooled ThermoTherapy product line from EDAP in October 2000.

Net interest income

     Net interest income decreased to $8,000 and $119,000 for the three and
nine-month periods ended March 31, 2003 from $50,000 and $170,000 during the
same period of the prior fiscal year. The decrease is primarily attributable to
lower interest income due to lower cash and investment balances, partially
offset by lower interest expense.

LIQUIDITY AND CAPITAL RESOURCES

     We have financed our operations since inception through sales of equity
securities and sales of product. As of March 31, 2003, we had total cash, cash
equivalents and available-for-sale investments of $6.2 million and working
capital of $6.9 million.

     During the nine months ended March 31, 2003, we used $6.2 million of cash
in operating activities, primarily as a result of our net loss of $6.3 million
and an increase in inventory of $3.7 million that was partially offset by a net
decrease in accounts receivable of $2.4 million and depreciation and
amortization of $1.5 million. Our inventory increased due to the receipt of a
large number of control units from our third-party suppliers. We expect
inventory balances to decrease over the next several quarters as inventory
purchases are scheduled to decrease and inventory is sold or transferred into
property and equipment for use in our evaluation and long-term use programs.

     We generated $5.5 million from investing activities, resulting from the net
sale of $5.6 million of available-for-sale investments partially offset by the
purchase of $76,000 of property and equipment.

     We used $320,000 in financing activities as a result of $375,000 of
payments on capital lease obligations offset by $55,000 from the exercise of
stock options.

     We expect to continue to incur additional losses and we plan to continue
offering customers a variety of programs for both evaluation and long-term use
of our Cooled ThermoTherapy equipment in addition to purchase options. As of
March 31, 2003, our property and equipment, net, included approximately $2.8
million of equipment used in an evaluation or long-term use program. Depending
on the growth of these programs, we may use additional capital to finance the
units used by these customers.

     We are exploring ways to reduce our expenses and efficiently use working
capital to preserve cash while we focus on maintaining and increasing sales and
continue to provide high quality support to our customers. Third party financing
may also present opportunities to leverage the equipment used by our customers
under evaluation and long-term use programs.

                                       13
Based upon these factors, we believe our $6.2 million in cash, cash
equivalents, and available-for-sale securities, together with funds generated
from product sales, will be sufficient to fund our working capital and capital
resources need for the next 12 months.

     There can be no assurance, however, that we will not require additional
financing in the future or that any additional financing will be available to us
on satisfactory terms, if at all.

                                       14
FACTORS THAT MAY AFFECT OUR FUTURE RESULTS AND THE TRADING PRICE OF OUR COMMON
STOCK

     The risks and uncertainties described below are not the only ones we face.
Additional risks and uncertainties not presently known to us or that we
currently deem immaterial may also affect our operations. The occurrence of any
of the following risks could harm our business. In that case, the trading price
of our common stock could decline, and investors may lose all or part of their
investment.

We have a limited operating history and expect to continue to generate losses.

     We have incurred substantial losses since our inception and, if physicians
do not purchase and use our Cooled ThermoTherapy systems to treat patients with
BPH, we may never achieve or maintain profitable operation. We incurred a net
loss of approximately $6.3 million for the nine month period ended March 31,
2003, and have incurred losses of approximately $76 million since our inception.
We expect to continue to incur operating losses in the near future as we
continue our investment in sales and marketing activities to increase sales,
continue to incur costs and expenses to protect our intellectual property, and
fund research and development activities. We will need to significantly increase
the revenues we receive from sales of our products to fund these operating
expenses. We may be unable to do so, and therefore may never achieve
profitability. Even if we do achieve profitability, we cannot be certain that we
will be able to sustain or increase profitability on a quarterly or annual
basis.

Our products may not achieve market acceptance, which could limit our future
revenue.

     Physicians will not recommend Cooled ThermoTherapy procedures unless they
conclude, based on clinical data and other factors, that it is an effective
alternative to other methods of enlarged prostate treatment, including more
established methods. Patient acceptance of the procedure will depend in part
upon physician recommendations and on other factors, including the degree of
invasiveness and the rate and severity of complications associated with the
Cooled ThermoTherapy procedure compared with other therapies. Patient acceptance
of the Cooled ThermoTherapy procedure also will depend upon the ability of
physicians to educate these patients on their treatment choices. Health care
payer acceptance of our procedure will require, among other things, evidence of
the cost effectiveness of Cooled ThermoTherapy compared to other BPH therapies.
Our marketing strategy must overcome the difficulties inherent in the
introduction of new technology to the medical community. If our Cooled
ThermoTherapy procedure is not accepted by physicians, patients or payers, or is
accepted more slowly than expected, we may never operate profitably.

We are faced with intense competition and rapid technological and industry
change.

     The medical device industry is characterized by rapid technological change,
changing customer needs and frequent new product introductions. Our products may
be rendered obsolete as a result of future innovations. We face intense
competition from other device manufacturers and surgical manufacturers, as well
as from pharmaceutical companies. Many of our competitors are significantly
larger than we are and have greater financial, technical, research, marketing,
sales, distribution and other resources than we do. There is intense price
competition for products developed in our markets. Our competitors may develop
or market technologies and products, including drug-based treatments that are
more effective or commercially attractive than any we are developing or
marketing. Our competitors may succeed in obtaining regulatory approval and
introducing or commercializing products before we do. These developments could
have a significant negative effect on our financial condition. Even if we are
able to compete successfully, we may not be able to do so in a profitable
manner.

Third- party reimbursement is critical to market acceptance of our products.

     Our future revenues are subject to uncertainties regarding health care
reimbursement and reform. In the United States, health care providers, such as
hospitals and physicians, generally rely on third-party payers.

                                       15
Third-party reimbursement is dependent upon decisions by the Center for
Medicare and Medicaid Services (CMS), contract Medicare carriers, individual
managed care organizations, private insurers, foreign governmental health
programs and other payers of health care costs. Failure to receive or maintain
favorable coding, coverage and reimbursement determinations for Cooled
ThermoTherapy by these organizations could discourage physicians from using our
products. We may be unable to sell our products on a profitable basis if
third-party payers deny coverage, provide low reimbursement rates or reduce
their current levels of reimbursement.

     On January 17, 2003, Medicare published new rates for office-based
microwave treatments, including Cooled ThermoTherapy. These rates became
effective for office based microwave treatments claims processed by Medicare on
or after March 1, 2003. The new rates published by Medicare reflect a decrease
of approximately 30% from previous office-based reimbursement rates. We do not
yet know what impact this rate change will ultimately have on our business. The
rate change may discourage some physicians from using our products or could
limit our future growth.

     The continuing efforts of government, insurance companies, health
maintenance organizations and other payers of health care costs to contain or
reduce costs of health care may affect our future revenues and profitability.
With recent federal and state government initiatives directed at lowering the
total cost of health care, the United States Congress and state legislatures
will likely continue to focus on health care reform, including the reform of
Medicare and Medicaid systems, and on the cost of medical products and services.
Additionally, third-party payers are increasingly challenging the prices charged
for medical products and services. Also, the trend toward managed health care in
the United States and the concurrent growth of organizations such as HMOs that
could control or significantly influence the purchase of health care services
and products, as well as legislative proposals to reform health care or reduce
government insurance programs, may also result in lower prices for or rejection
of our products. The cost containment measures that health care payers and
providers are instituting and the effect of any health care reform could cause
reductions in the amount of reimbursement available, and could have a materially
adverse affect on our revenues and ability to operate profitably.

Our intangible assets and goodwill could become impaired.

     Intangible assets consisting of acquired developed technologies and
customer base are amortized over useful lives of 15 years and 14 years,
respectively. We do not amortize the acquired trademarks as they are considered
indefinite-lived intangible assets. Long-lived assets, including amortizing
intangibles, are reviewed for impairment whenever events or changes in
circumstances indicate that the carrying amount of an asset may not be
recoverable. Recoverability of assets to be held and used is measured by a
comparison of the carrying amount of an asset to future net cash flows expected
to be generated by the asset. Following a review, if such assets are considered
to be impaired, the impairment to be recognized is measured by the amount by
which the carrying amount of the assets exceeds the fair value of the assets.

     With the adoption of SFAS 142, goodwill is no longer being amortized
against earnings and goodwill balances are subject to an impairment review on an
annual basis or sooner if indicators of potential impairment exists. The test
for impairment requires us to make several estimates about fair value, most of
which are based on total market capitalization as compared to the carrying value
of our net assets. If our total market capitalization is at or below the
carrying value of our net assets for several quarters, it may prompt us to
engage a third party valuation firm to perform a valuation to access whether our
goodwill is impaired. Amortization of intangible assets was $166,000 and
$498,000 for the three and nine-month periods ended March 31, 2003. Future
annual amortization expense for acquired intangible assets is expected to be
$664,000 for each of the next five fiscal

Our inventory could become impaired.

     At March 31, 2003, our inventory had a carrying value of $4.7 million,
including finished goods of $2.7 million. As we discussed in Management's
Discussion and Analysis in this Form 10-Q, during the nine months ended March
31, 2003, we experienced a decrease in the average selling price of our Cooled
ThermoTherapy systems as a result of increased competition in our market.
Although we believe that our Cooled ThermoTherapy system has demonstrated
superior results to those of our competitors, if we continue to experience
significant price competition that results in a need to decrease the selling
prices of our Cooled ThermoTherapy system, we may

                                       16
determine that our inventory of Cooled ThermoTherapy systems is impaired and be
required to revalue it, thereby incurring a charge.

We are dependent on adequate protection of our patent and proprietary rights.

     We rely on patents, trade secrets, trademarks, copyrights, know-how,
license agreements and contractual provisions to establish and protect our
intellectual property rights. These legal means afford us only limited
protection, however, and may not adequately protect our rights or remedies to
gain or keep any advantages we may have over our competitors.

     In March 2002, we filed a patent infringement action against ProstaLund AB,
ProstaLund Operations AB, and Circon Corporation a/k/a ACMI Corporation in the
United States District Court for the Eastern District of Wisconsin (and by a
later amended complaint) alleging that the defendants' products infringed two
United States Patents that were assigned to us. The defendants raised
counterclaims against us and are seeking recovery of their legal fees. In
October 2002, the Court issued orders invalidating one of our patents and denied
our motion for a preliminary injunction. See "Legal Proceedings" for a
discussion of developments in these proceedings.

     Although we continue to believe that we will prevail in the trial, there
can be no assurance that we will be successful. In addition, because we lost our
request for injunctive relief, we are currently unable to prevent the defendants
from selling their products in the United States. Although we believe that our
products have demonstrated superior results to the defendants' products, there
can be no assurance that the defendants will not be able to capture a
significant part of the market for less invasive BPH treatments, which could
have an adverse effect on our future results of operations and profitability. In
addition, this litigation has resulted in substantial expense and we anticipate
that there may be additional substantial expense involved in this litigation.
Furthermore, the existence of this litigation may divert our attention from
implementing our business strategy.

     Additional litigation against other parties may be necessary in the future
to enforce our intellectual property rights, to protect our patents and trade
secrets, and to determine the validity and scope of our proprietary rights.
Furthermore, we cannot be assured that others have not developed or will not
develop similar products or manufacturing processes, duplicate any of our
products or manufacturing processes, or design around any of our patents.

We depend upon our Cooled ThermoTherapy systems for all of our revenues.

     All of our revenues are derived from sales of our Cooled ThermoTherapy
systems and single-use disposable treatment catheters. As a result, our success
is solely dependent upon the success of our Cooled ThermoTherapy systems. To
date, our Cooled ThermoTherapy systems have not received widespread market
acceptance. If we are unable to commercialize the use of these systems
successfully, our business, financial condition and results of operations will
be materially and adversely affected.

We have limited manufacturing experience and are dependent upon a limited number
of third-party suppliers to manufacture our products.

     We have contracted with third parties for the production of the Prostatron
product line and the Targis system control unit pursuant to written supply
agreements. If, for any reason, any of our third-party manufacturers are unable
or unwilling to manufacture the products for us in the future, we could incur
significant delays in obtaining a substitute contract manufacturer. Also, we
purchase additional components used in our products from various suppliers and
rely on single sources for several components. One such component is obtained
from a source that has a patent for the technology. Delays could result if
supply of this component or other components were interrupted. These delays
could be extended in certain situations in which a substitute contract
manufacturer or a component substitution would require approval by the FDA of a
PMA supplement. The termination or interruption of any of these relationships,
or the failure of these manufacturers or suppliers to supply products or
components to us on a timely basis or in sufficient quantities, likely would
cause us to be unable to meet customer orders for our products and harm our
business.

                                       17
We produce the disposable treatment catheter for the Targis system. We have
limited experience in rapidly scaling up production. Manufacturers often
encounter difficulties in scaling up production of new products, including
problems involving production yields, product recalls, quality control and
assurance, component supply and lack of qualified personnel.

     If we or any of our third-party manufacturers or suppliers experience
production problems, we may not be able to locate an alternate manufacturer
promptly. Identifying and qualifying alternative suppliers of components takes
time and involves significant additional costs and may delay the production of
our products. The FDA requires us to identify any supplier we use. The FDA may
require additional testing of any component from new suppliers prior to our use
of these components. The termination of our relationships with these single
source suppliers or the failure of these parties to supply us with the
components on a timely basis and in sufficient quantities likely would cause us
to be unable to meet customer orders for our products in a timely manner or
within our budget and harm our business.

We are dependent on distributors for international sales.

     To date, a majority of our revenues outside the United States have been
derived from sales through third-party distributors. Although we intend to work
with our distributors and agents to improve international revenue, we expect a
decline in fiscal 2003 over fiscal 2002, driven primarily by a decrease in
reimbursement for Cooled ThermoTherapy in Japan. Further, the failure of our
distributors to market our products in the international markets effectively or
our failure to locate and establish relationships with reputable distributors
could have an adverse effect on our ability to achieve penetration of these
markets and establish long-term acceptance of Cooled ThermoTherapy.

We are dependent on key personnel.

     Failure to attract and retain skilled personnel could hinder our sales and
marketing and research and development efforts. Our future success depends to a
significant degree upon our ability to attract and retain qualified sales
personnel and the continued services of key technical and senior management
personnel. The inability to retain or attract qualified personnel could have a
significant negative effect and thereby materially harm our business and
financial condition.

Government regulation can have a significant impact on our business.

     Government regulation in the United States and other countries is a
significant factor affecting the research and development, manufacture and
marketing of our products. In the United States, the FDA has broad authority
under the Federal Food, Drug and Cosmetic Act and the Public Health Service Act
to regulate the distribution, manufacture and sale of medical devices. Sales of
drugs and medical devices outside the United States are subject to government
regulation and restrictions that vary from country to country. The process of
obtaining FDA and other required regulatory approvals is lengthy and expensive.

     We may not be able to obtain necessary approvals for clinical testing or
for the manufacturing or marketing of our products. Failure to comply with
applicable regulatory approvals can, among other things, result in fines,
suspension of regulatory approvals, product recalls, operating restrictions and
criminal prosecution. In addition, government regulations may be established
that could prevent, delay, modify or rescind regulatory approval of our
products. Any such position or change of position by the FDA may adversely
impact our business and financial condition. Regulatory approvals, if granted,
may include significant limitations on the indicated uses for which our products
may be marketed. In addition to obtaining such approvals, the FDA and foreign
regulatory authorities may impose numerous other requirements on us. FDA
prohibits the marketing of approved medical devices for unapproved uses. In
addition, product approvals can be withdrawn for failure to comply with
regulatory standards or the occurrence of unforeseen problems following initial
marketing. We may not be able to obtain regulatory approvals for our products on
a timely basis, or at all, and delays in receipt of or failure to receive such
approvals, the loss of previously obtained approvals, or failure to comply with
existing or future regulatory requirements

                                       18
would have a significant negative effect on our financial condition. In
addition, the health care industry in the United States is generally subject to
fundamental change due to regulatory, as well as political, influences. We
anticipate that Congress and state legislatures will continue to review and
assess alternative health care delivery and payment systems. Potential
approaches that have been considered include controls on health care spending
through limitations on the growth of private purchasing groups and price
controls. We cannot predict what impact the adoption of any federal or state
health care reform measures may have on our business.

     We, as well as our distributors and health care providers who purchase our
products and services, are subject to state and federal laws prohibiting
kickbacks or other forms of bribery in the health care industry. We may be
subject to civil and criminal prosecution and penalties if we or our agents
violate any of these laws.

We may be required to pay damages that exceed our insurance coverage for product
liability claims.

     Our business exposes us to potential product liability claims that are
inherent in the testing, production, marketing and sale of medical devices.
While we believe that we are reasonably insured against these risks, we may not
be able to obtain insurance in amounts or scope sufficient to provide us with
adequate coverage against all potential liabilities. Currently, we maintain
product liability insurance in amounts we deem to be reasonable. Some plaintiffs
have sought punitive or exemplary damages against us, which damages, if awarded,
may not be covered by insurance pursuant to state law or the provisions of our
insurance policies. A product liability claim in excess of our insurance
coverage or outside the scope of our coverage would have to be paid out of cash
reserves and would harm our reputation in the industry and our business.

Our products may be subject to product recalls even after receiving FDA
clearance or approval, which would harm our reputation and our business.

     The FDA and similar governmental authorities in other countries have the
authority to request and, in some cases, require the recall of our products in
the event of material deficiencies or defects in design or manufacture. A
government-mandated or voluntary recall by us could occur as a result of
component failures, manufacturing errors or design defects. Any recall of
product would divert managerial and financial resources and harm our reputation
with customers and our business.

Fluctuations in our future operating results may negatively affect the market
price of our common stock.

     Our operating results have fluctuated in the past and can be expected to
fluctuate from time to time in the future. Some of the factors that may cause
these fluctuations include but are not limited to:

 .   the timing and volume of customer orders for both equipment and single-use
     treatment catheters,

 .   the impact of reimbursement changes

 .   costs and expenses related to our effort to protect intellectual property,

 .   the timing of expenditures related to sales and marketing, and research and
     development, and

 .   product availability.

Our business is exposed to risks related to acquisitions and mergers.

     As part of our strategy to commercialize our products, we may acquire one
or more businesses. On October 1, 2000, we purchased the Transurethral Microwave
ThermoTherapy (TUMT or Cooled ThermoTherapy) product line and related patents
and technologies from EDAP TMS S.A., a French corporation and its affiliates. We
may not be able to integrate our business effectively with any other business we
may acquire. The failure to integrate an acquired company or acquired assets
into our operations may cause a drain on our financial and managerial resources,
and thereby have a significant negative effect on our business and financial
results.

                                       19
These difficulties could disrupt our ongoing business, distract our
management and employees or increase our expenses. Furthermore, any physical
expansion in facilities due to an acquisition may result in disruptions that
seriously impair our business. We are not experienced in managing facilities or
operations in geographically distant areas. In addition, our profitability may
suffer because of acquisition-related costs or amortization costs for other
intangible assets. Finally, in connection with any future acquisitions, we may
incur debt or issue equity securities as part or all of the consideration for
the acquired company's assets or capital stock. We may be unable to obtain
sufficient additional financing on favorable terms or at all. Equity issuances
would be dilutive to our existing shareholders.

Our stock price may be volatile and a shareholder's investment could decline in
value.

       Our stock price has fluctuated in the past and is likely to continue to
fluctuate significantly, making it difficult to resell shares at an attractive
price when an investor wants to. The market prices for securities of emerging
companies have historically been highly volatile. Future events concerning us or
our competitors could cause such volatility, including:

 .   actual or anticipated variations in our operating results,

 .   developments regarding government and third-party reimbursement,

 .   changes in government regulation,

 .   government investigation of us or our products,

 .   changes in reimbursement rates or methods affecting our products,

 .   developments concerning proprietary rights,

 .   litigation or public concern as to the safety of our products or our
     competitors' products,

 .   technological innovations or new commercial products by us or our
     competitors,

 .   investor perception of us and our industry, and

 .   general economic and market conditions including market uncertainty.

       In addition, the stock market is subject to price and volume fluctuations
that affect the market prices for companies in general, and
small-capitalization, high-technology companies in particular, which are often
unrelated to the operating performance of these companies. If our operating
results are below the expectations of securities analysts or investors, the
market price of our common stock may fall abruptly and significantly.

Future sales of shares of our common stock may negatively affect our stock
price.

       Future sales of our common stock, including shares issued upon the
exercise of outstanding options or hedging or other derivative transactions with
respect to our stock, could have a significant negative effect on the market
price of our common stock. These sales also might make it more difficult for us
to sell equity securities or equity-related securities in the future at a time
and price that we would deem appropriate.

Anti-takeover provisions in our articles of incorporation may have a possible
negative effect on our stock price.

       Certain provisions of our certificate of incorporation and bylaws may
make it more difficult for a third party to acquire, or discourage a third party
from attempting to acquire control of us. We have in place several anti-takeover
measures that could discourage or prevent a takeover, even if an acquisition
would be beneficial to our shareholders. Our stock option plans contain
provisions that allow for the acceleration of vesting or payments of awards
granted under the plans in the event of specified events that result in a
"change in control." In addition, we have adopted a shareholder rights plan that
would cause substantial dilution to any person or group attempting to acquire
our company on terms not approved in advance by our board of directors.

ITEM 3. QUALITATIVE AND QUANTITATIVE DISCLOSURE ABOUT MARKET RISK

       Our financial instruments include cash and cash equivalents. The fair
value of our financial investment

                                       20
portfolio at March 31, 2003, approximated carrying value. Increases and
decreases in prevailing interest rates generally translate into decreases and
increases in the fair value of these instruments. Also, fair values of interest
rate sensitive instruments may be affected by the credit worthiness of the
issuer, prepayment options, relative values of alternative instruments, the
liquidity of the instrument and other general market conditions.

     Market risk was estimated as the potential decrease in fair value resulting
from a hypothetical 1% change in interest rates for the issues contained in the
investment portfolio and was not materially different from the March 31, 2003
carrying value. Due to the nature of our short-term investments, we have
concluded that we do not have a material market risk exposure.

     Our policy is not to enter into derivative financial instruments. We do not
have any significant foreign currency exposure since we do not generally
transact business in foreign currencies. Therefore, we do not have significant
overall currency exposure. In addition, we do not enter into any futures or
forward contracts and, therefore, do not have significant market risk exposure
with respect to commodity prices.

                                       21
ITEM 4. CONTROLS AND PROCEDURES

(a) Evaluation of Disclosure Controls and Procedures.

     The Company's Chief Executive Officer, Michael M. Selzer, Jr., and Chief
Financial Officer, Christopher R. Geyen, have reviewed the Company's disclosure
controls and procedures within 90 days prior to the filing of this report. Based
upon this review, these officers believe that the Company's disclosure controls
and procedures are effective in ensuring that material information related to
the Company is made known to them by others within the Company.

(b) Changes in Internal Controls.

     There were no significant changes in the Company's internal controls or in
other factors that could significantly affect these controls during the quarter
covered by this report or from the end of the reporting period to the date of
this Form 10-Q.

                                       22
PART II - OTHER INFORMATION

ITEM 1. LEGAL PROCEEDINGS

     Our business exposes us to product liability claims that are inherent in
the testing, production, marketing and sale of medical devices. Management
believes any losses that may occur from these matters are adequately covered by
insurance, and the ultimate outcome of these matters will not have a material
effect on the financial position or results of operations of the Company. In
addition, the Company is involved in the litigation set forth below.

Urologix v. ProstaLund AB et al.

     In March 2002, we filed a patent infringement action against ProstaLund AB,
ProstaLund Operations AB, and Circon Corporation a/k/a ACMI Corporation in the
United States District Court for the Eastern District of Wisconsin (and by a
later amended complaint) alleging that the defendants' products infringed two
United States Patents that were assigned to us: U.S. Patent No. 5,234,004 ("004
Patent") and U.S. Patent No. 5,509,929 the ("929 Patent"). We sought a
preliminary injunction prohibiting the manufacture, use, sale, or offer for sale
of the "ProstaLund Feedback Treatment" and an unspecified amount of damages. The
defendants counterclaimed, alleging that they do not infringe our patents, that
our patents are invalid and that we have "marked" our products as "patented" in
a manner that violates patent law. The defendants are also seeking recovery of
their attorneys' fees.

     In October 2002, the Court issued two separate Orders in this case. In an
Order dated October 10, 2002, the Court determined that the `004 patent was not
entitled to the benefit of an earlier filing date of a parent application and as
a result was invalid. In an Order dated October 16, 2002, the Court denied our
motion for a preliminary injunction on the `929 patent.

     Subsequent to the Court Action in November 2002, in response to our
request, In November, 2002, the United States Patent and Trademark Office
("PTO") issued an office action granting Urologix the benefit of the earlier
office action on the `004 patent. In light of the PTO office action, we filed a
motion with the Court in November 2002 requesting that the Court vacate the
October 10, 2002 Order determining the `004 patent was invalid. In April 2003,
the Court denied our motion to vacate the October 10, 2002 Order.

     We are evaluating our options in connection with the lawsuit and are
preparing for a trial on the merits of the infringement claims of the `929
patent which has been scheduled by the Court for January 2004. See "Factors that
may affect our future results and the trading price of our Common Stock - We are
dependent on adequate protection of our patent and proprietary rights."

ITEM 5. SUBMISSION OF MATTERS TO A VOTE OF SECURITY HOLDERS

None

                                       23
ITEM 6.  EXHIBITS AND REPORTS ON FORM 8-K

(a)  Exhibits

     Exhibit 99.1 Certification of Chief Executive Officer Pursuant to Section
       906 of the Sarbanes-Oxley Act of 2002
     Exhibit 99.2 Certification of Chief Financial Officer Pursuant to Section
       906 of the Sarbanes-Oxley Act of 2002

(b) Report on Form 8-K
    a. No reports on Form 8-K were filed during the period ended March 31, 2003

                                       24
SIGNATURES

Pursuant to the requirements of the Securities Exchange Act of 1934, the
Registrant has duly caused this report to be signed on its behalf by the
undersigned thereunto duly authorized.

Date May 14, 2003

Urologix, Inc.

(Registrant)

/s/ Michael M. Selzer, Jr.
--------------------------
Michael M. Selzer, Jr.
President and Chief Executive Officer
(Duly Authorized Officer)

/s/ Christopher R. Geyen
------------------------

Christopher R. Geyen
Vice President and Chief Financial Officer
(Principal Financial Officer)

                                       25
CERTIFICATIONS

I, Michael M. Selzer, Jr., certify that:

1. I have reviewed this quarterly report on Form 10-Q of Urologix, Inc.;

2. Based on my knowledge, this quarterly report does not contain any untrue
statement of a material fact or omit to state a material fact necessary to make
the statements made, in light of the circumstances under which such statements
were made, not misleading with respect to the period covered by this quarterly
report;

3. Based on my knowledge, the financial statements, and other financial
information included in this quarterly report, fairly present in all material
respects the financial condition, results of operations and cash flows of the
registrant as of, and for, the periods presented in this quarterly report;

4. The registrant's other certifying officers and I are responsible for
establishing and maintaining disclosure controls and procedures (as defined in
Exchange Act Rules 13a-14 and 15d-14) for the registrant and we have:

          a) designed such disclosure controls and procedures to ensure that
          material information relating to the registrant, including its
          consolidated subsidiaries, is made known to us by others within those
          entities, particularly during the period in which this quarterly
          report is being prepared;

          b) evaluated the effectiveness of the registrant's disclosure controls
          and procedures as of a date within 90 days prior to the filing date of
          this quarterly report (the "Evaluation Date"); and

          c) presented in this quarterly report our conclusions about the
          effectiveness of the disclosure controls and procedures based on our
          evaluation as of the Evaluation Date;

5. The registrant's other certifying officers and I have disclosed, based on our
most recent evaluation, to the registrant's auditors and the audit committee of
registrant's board of directors (or persons performing the equivalent function):

          a) all significant deficiencies in the design or operation of internal
          controls which could adversely affect the registrant's ability to
          record, process, summarize and report financial data and have
          identified for the registrant's auditors any material weaknesses in
          internal controls; and

          b) any fraud, whether or not material, that involves management or
          other employees who have a significant role in the registrant's
          internal controls; and

6. The registrant's other certifying officers and I have indicated in this
quarterly report whether or not there were significant changes in internal
controls or in other factors that could significantly affect internal controls
subsequent to the date of our most recent evaluation, including any corrective
actions with regard to significant deficiencies and material weaknesses.

Date:    May 14, 2003                     /s/ Michael M. Selzer, Jr.
       --------------                     --------------------------
                                          Michael M. Selzer, Jr.
                                          President and Chief Executive Officer

                                       26
I, Christopher R. Geyen, certify that:

1. I have reviewed this quarterly report on Form 10-Q of Urologix, Inc.

2. Based on my knowledge, this quarterly report does not contain any untrue
statement of a material fact or omit to state a material fact necessary to make
the statements made, in light of the circumstances under which such statements
were made, not misleading with respect to the period covered by this quarterly
report;

3. Based on my knowledge, the financial statements, and other financial
information included in this quarterly report, fairly present in all material
respects the financial condition, results of operations and cash flows of the
registrant as of, and for, the periods presented in this quarterly report;

4. The registrant's other certifying officers and I are responsible for
establishing and maintaining disclosure controls and procedures (as defined in
Exchange Act Rules 13a-14 and 15d-14) for the registrant and we have:

          a) designed such disclosure controls and procedures to ensure that
          material information relating to the registrant, including its
          consolidated subsidiaries, is made known to us by others within those
          entities, particularly during the period in which this quarterly
          report is being prepared;

          b) evaluated the effectiveness of the registrant's disclosure controls
          and procedures as of a date within 90 days prior to the filing date of
          this quarterly report (the "Evaluation Date"); and

          c) presented in this quarterly report our conclusions about the
          effectiveness of the disclosure controls and procedures based on our
          evaluation as of the Evaluation Date;

5. The registrant's other certifying officers and I have disclosed, based on our
most recent evaluation, to the registrant's auditors and the audit committee of
registrant's board of directors (or persons performing the equivalent function):

          a) all significant deficiencies in the design or operation of internal
          controls which could adversely affect the registrant's ability to
          record, process, summarize and report financial data and have
          identified for the registrant's auditors any material weaknesses in
          internal controls; and

          b) any fraud, whether or not material, that involves management or
          other employees who have a significant role in the registrant's
          internal controls; and

6. The registrant's other certifying officers and I have indicated in this
quarterly report whether or not there were significant changes in internal
controls or in other factors that could significantly affect internal controls
subsequent to the date of our most recent evaluation, including any corrective
actions with regard to significant deficiencies and material weaknesses.

Date:   May 14, 2003                       /s/ Christopher R. Geyen
       -------------                       ------------------------
                                           Christopher R. Geyen
                                           Vice President and
                                           Chief Financial Officer

                                       27