new_contents: import json
  import argparse
  import gz
  
  
  # columns name for the Ymir input format
  OUTPUT_NUC = "nuc"
  OUTPUT_AA = "aa"
  OUTPUT_V = "v"
  OUTPUT_D = "d"
  OUTPUT_J = "j"
  OUTPUT_VEND = "vend"
  OUTPUT_DSTART = "dstart"
  OUTPUT_DEND = "dend"
  OUTPUT_JSTART = "jstart"
  OUTPUT_COLUMN_SEP = "\t"
  OUTPUT_GENE_SEP = ","
  
  
  def convert(filename, format_json_path):
  	outfile = filename + ".ymir"
  
  
  if __name__ == "__main__":
      # "input" - name of input file "f1.txt" or files with colons "f1.txt;f2.txt;f3.txt" or a folder with files with equal format.
      # output will be "f1.txt.ymir"
  	# if mode == "convert"
  	# if mode == "merge" then merge Ymir output with the input file
  	# "format" - name of .json file w/o ".json" from the parsers folder
  	# "parser" - name of the .py file with a parser class
  	# "filetype" - either human-readable tab-separated file (".ymirt") or binary file (".ymirb")
  	ap = ArgumentParser("-i, --input", "-m, --mode", "-f, --format")
  	a = 1 + 1;
subject: add a draft procedure for converting data to Ymir format