from os.path import join as pjoin

def configuration(parent_package='', top_path=None, setup_name='setupscons.py'):
    from numpy.distutils.misc_util import Configuration
    from numpy.distutils.misc_util import scons_generate_config_py

    pkgname = 'scipy'
    config = Configuration(pkgname, parent_package, top_path,
                           setup_name = 'setupscons.py')
    config.add_subpackage('cluster')
    config.add_subpackage('fftpack')
    config.add_subpackage('integrate')
    config.add_subpackage('interpolate')
    config.add_subpackage('io')
    config.add_subpackage('lib')
    config.add_subpackage('linalg')
    config.add_subpackage('linsolve')
    config.add_subpackage('maxentropy')
    config.add_subpackage('misc')
    config.add_subpackage('odr')
    config.add_subpackage('optimize')
    config.add_subpackage('signal')
    config.add_subpackage('sparse')
    config.add_subpackage('special')
    config.add_subpackage('stats')
    config.add_subpackage('ndimage')
    config.add_subpackage('stsci')
    config.add_subpackage('weave')
    config.make_svn_version_py()  # installs __svn_version__.py

    def add_config(*args, **kw):
        # Generate __config__, handle inplace issues.
        if kw['scons_cmd'].inplace:
            target = pjoin(kw['pkg_name'], '__config__.py')
        else:
            target = pjoin(kw['scons_cmd'].build_lib, kw['pkg_name'],
                           '__config__.py')
        scons_generate_config_py(target)
    config.add_sconscript(None, post_hook = add_config)

    return config

if __name__ == '__main__':
    from numpy.distutils.core import setup
    setup(**configuration(top_path='').todict())

from os.path import join as pjoin

def configuration(parent_package='', top_path=None, setup_name='setupscons.py'):
    from numpy.distutils.misc_util import Configuration
    from numpy.distutils.misc_util import scons_generate_config_py

    pkgname = 'scipy'
    config = Configuration(pkgname, parent_package, top_path,
                           setup_name = 'setupscons.py')
    config.add_subpackage('cluster')
    config.add_subpackage('fftpack')
    config.add_subpackage('integrate')
    config.add_subpackage('interpolate')
    config.add_subpackage('io')
    config.add_subpackage('lib')
    config.add_subpackage('linalg')
    config.add_subpackage('linsolve')
    config.add_subpackage('maxentropy')
    config.add_subpackage('misc')
    config.add_subpackage('odr')
    config.add_subpackage('optimize')
    config.add_subpackage('signal')
    config.add_subpackage('sparse')
    config.add_subpackage('spatial')
    config.add_subpackage('special')
    config.add_subpackage('stats')
    config.add_subpackage('ndimage')
    config.add_subpackage('stsci')
    config.add_subpackage('weave')
    config.make_svn_version_py()  # installs __svn_version__.py

    def add_config(*args, **kw):
        # Generate __config__, handle inplace issues.
        if kw['scons_cmd'].inplace:
            target = pjoin(kw['pkg_name'], '__config__.py')
        else:
            target = pjoin(kw['scons_cmd'].build_lib, kw['pkg_name'],
                           '__config__.py')
        scons_generate_config_py(target)
    config.add_sconscript(None, post_hook = add_config)

    return config

if __name__ == '__main__':
    from numpy.distutils.core import setup
    setup(**configuration(top_path='').todict())

Add spatial to numscons build.