#!/usr/bin/env python3
# -*- coding: utf-8 -*-
# (c) Camille Scott, 2019
# File   : test_signatures.py
# License: MIT
# Author : Camille Scott <camille.scott.w@gmail.com>
# Date   : 16.10.2019

import pytest

from boink.signatures import SourmashSignature

from .utils import *
import screed

def test_sourmash_signature(datadir, ksize):
    import sourmash

    rfile = datadir('random-20-a.fa')

    boink_sig = SourmashSignature.Signature.build(10000, 31, False, 42, 0)
    sourmash_sig = sourmash.MinHash(10000, 31)

    processor = SourmashSignature.Processor.build(boink_sig)
    processor.process(rfile)

    for record in screed.open(rfile):
        sourmash_sig.add_sequence(record.sequence)

    boink_mh = boink_sig.to_sourmash()

    assert boink_mh.similarity(sourmash_sig) == 1.0

#!/usr/bin/env python3
# -*- coding: utf-8 -*-
# (c) Camille Scott, 2019
# File   : test_signatures.py
# License: MIT
# Author : Camille Scott <camille.scott.w@gmail.com>
# Date   : 16.10.2019

import pytest

from boink.signatures import SourmashSignature

from .utils import *
import screed

def test_sourmash_signature(datadir, ksize):
    import sourmash

    rfile = datadir('random-20-a.fa')

    boink_sig = SourmashSignature.Signature.build(10000, 31, False, False, False, 42, 0)
    sourmash_sig = sourmash.MinHash(10000, 31)

    processor = SourmashSignature.Processor.build(boink_sig)
    processor.process(rfile)

    for record in screed.open(rfile):
        sourmash_sig.add_sequence(record.sequence)

    boink_mh = boink_sig.to_sourmash()

    assert boink_mh.similarity(sourmash_sig) == 1.0

Fix parameters to ::build in test_signatures