from __future__ import print_function

import os
from distutils.core import setup
from setuptools import find_packages
try:
    from Cython.Build import cythonize
    import Cython.Distutils
    CYTHON=True
except ImportError:
    CYTHON=False
    print('CYTHON UNAVAILABLE')
try:
    import numpy
    NUMPY = True
except ImportError:
    NUMPY = False
    print('NUMPY NOT INSTALLED')

# allow setup.py to be run from any path
os.chdir(os.path.normpath(os.path.join(os.path.abspath(__file__), os.pardir)))

setup(
    name='pyquant-ms',
    version='0.1.43rc2',
    packages=find_packages(),
    scripts=['scripts/pyQuant'],
    entry_points={'console_scripts': ['pyQuant = pyquant.command_line:run_pyquant',]},
    install_requires = ['cython', 'numpy', 'scipy >= 0.18.*', 'patsy', 'pythomics >= 0.3.41', 'pandas', 'lxml', 'scikit-learn', 'simplejson'],
    include_package_data=True,
    description='A framework for the analysis of quantitative mass spectrometry data',
    url='http://www.github.com/pandeylab/pyquant',
    author='Chris Mitchell <chris.mit7@gmail.com>',
    classifiers=[
        'License :: OSI Approved :: MIT License',
        'Operating System :: OS Independent',
        'Programming Language :: Python',
    ],
    cmdclass={'build_ext': Cython.Distutils.build_ext} if CYTHON else {},
    ext_modules = cythonize("pyquant/*.pyx") if CYTHON else [],
    include_dirs = [numpy.get_include()] if NUMPY else [],
)

from __future__ import print_function

import os
from distutils.core import setup
from distutils.extension import Extension
from setuptools import find_packages
try:
    from Cython.Build import cythonize
    import Cython.Distutils
    CYTHON=True
except ImportError:
    CYTHON=False
    print('CYTHON UNAVAILABLE')
try:
    import numpy
    NUMPY = True
except ImportError:
    NUMPY = False
    print('NUMPY NOT INSTALLED')

# allow setup.py to be run from any path
os.chdir(os.path.normpath(os.path.join(os.path.abspath(__file__), os.pardir)))

setup(
    name='pyquant-ms',
    version='0.1.43rc2',
    packages=find_packages(),
    scripts=['scripts/pyQuant'],
    entry_points={'console_scripts': ['pyQuant = pyquant.command_line:run_pyquant',]},
    install_requires=['cython', 'numpy', 'scipy >= 0.18.*', 'patsy', 'pythomics >= 0.3.41', 'pandas', 'lxml', 'scikit-learn', 'simplejson'],
    include_package_data=True,
    description='A framework for the analysis of quantitative mass spectrometry data',
    url='http://www.github.com/pandeylab/pyquant',
    author='Chris Mitchell <chris.mit7@gmail.com>',
    classifiers=[
        'License :: OSI Approved :: MIT License',
        'Operating System :: OS Independent',
        'Programming Language :: Python',
    ],
    setup_requires=[
        'cython',
    ],
    cmdclass={'build_ext': Cython.Distutils.build_ext} if CYTHON else {},
    extensions = [Extension("*", ["*.pyx"])],
    # ext_modules=cythonize("pyquant/*.pyx") if CYTHON else [],
    include_dirs=[numpy.get_include()] if NUMPY else [],
)

Fix linux install