old_contents: # Configuration file for the Sphinx documentation builder.
  #
  # This file only contains a selection of the most common options. For a full
  # list see the documentation:
  # https://www.sphinx-doc.org/en/master/usage/configuration.html
  
  # -- Path setup --------------------------------------------------------------
  
  # If extensions (or modules to document with autodoc) are in another directory,
  # add these directories to sys.path here. If the directory is relative to the
  # documentation root, use os.path.abspath to make it absolute, like shown here.
  #
  # import os
  # import sys
  # sys.path.insert(0, os.path.abspath('.'))
  
  import subprocess, os
  
  def configure_doxyfile(input_dir, output_dir):
      with open('Doxyfile.in', 'r') as file :
          filedata = file.read()
  
      filedata = filedata.replace('@DOXYGEN_INPUT_DIR@', input_dir)
      filedata = filedata.replace('@DOXYGEN_OUTPUT_DIR@', output_dir)
  
      with open('Doxyfile', 'w') as file:
          file.write(filedata)
  
  # Check if we're running on Read the Docs' servers
  read_the_docs_build = os.environ.get('READTHEDOCS', None) == 'True'
  
  breathe_projects = {}
  
  if read_the_docs_build:
      # run doxygen before to generate the xml
      output_dir = '../build'
      subprocess.call('doxygen', shell=True)
      breathe_projects['PopSift'] = output_dir + '/xml'
  
  
  
  
  # -- Project information -----------------------------------------------------
  
  project = u'PopSift'
  copyright = '2020, AliceVision'
  author = 'AliceVision'
  
  
  # -- General configuration ---------------------------------------------------
  
  # Add any Sphinx extension module names here, as strings. They can be
  # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
  # ones.
  extensions = ['breathe', 'sphinxcontrib.bibtex']
  
  # Add any paths that contain templates here, relative to this directory.
  templates_path = ['_templates']
  
  # List of patterns, relative to source directory, that match files and
  # directories to ignore when looking for source files.
  # This pattern also affects html_static_path and html_extra_path.
  exclude_patterns = []
  
  source_suffix = ['.rst', '.md']
  
  # -- Options for HTML output -------------------------------------------------
  
  # The theme to use for HTML and HTML Help pages.  See the documentation for
  # a list of builtin themes.
  #
  html_theme = 'sphinx_rtd_theme'
  
  # Add any paths that contain custom static files (such as style sheets) here,
  # relative to this directory. They are copied after the builtin static files,
  # so a file named "default.css" will overwrite the builtin "default.css".
  html_static_path = ['_static']
  
  # breathe_projects = {
  #     "PopSift": "../../doxygen/xml/",
  # }
  
  # Breathe Configuration
  breathe_default_project = 'PopSift'
new_contents: # Configuration file for the Sphinx documentation builder.
  #
  # This file only contains a selection of the most common options. For a full
  # list see the documentation:
  # https://www.sphinx-doc.org/en/master/usage/configuration.html
  
  # -- Path setup --------------------------------------------------------------
  
  # If extensions (or modules to document with autodoc) are in another directory,
  # add these directories to sys.path here. If the directory is relative to the
  # documentation root, use os.path.abspath to make it absolute, like shown here.
  #
  # import os
  # import sys
  # sys.path.insert(0, os.path.abspath('.'))
  
  import subprocess, os
  
  def configure_doxyfile(input_dir, output_dir):
      with open('Doxyfile.in', 'r') as file :
          filedata = file.read()
  
      filedata = filedata.replace('@DOXYGEN_INPUT_DIR@', input_dir)
      filedata = filedata.replace('@DOXYGEN_OUTPUT_DIR@', output_dir)
  
      with open('Doxyfile', 'w') as file:
          file.write(filedata)
  
  # Check if we're running on Read the Docs' servers
  read_the_docs_build = os.environ.get('READTHEDOCS', None) == 'True'
  
  breathe_projects = {}
  
  if read_the_docs_build:
      # run doxygen before to generate the xml
      output_dir = '../build'
      subprocess.call('doxygen', shell=True)
      breathe_projects['PopSift'] = output_dir + '/xml'
  
  
  
  
  # -- Project information -----------------------------------------------------
  
  project = u'PopSift'
  copyright = '2020, AliceVision'
  author = 'AliceVision'
  
  
  # -- General configuration ---------------------------------------------------
  
  # Add any Sphinx extension module names here, as strings. They can be
  # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
  # ones.
  extensions = ['breathe', 'sphinxcontrib.bibtex']
  bibtex_bibfiles = ['biblio.bib']
  
  # Add any paths that contain templates here, relative to this directory.
  templates_path = ['_templates']
  
  # List of patterns, relative to source directory, that match files and
  # directories to ignore when looking for source files.
  # This pattern also affects html_static_path and html_extra_path.
  exclude_patterns = []
  
  source_suffix = ['.rst', '.md']
  
  # -- Options for HTML output -------------------------------------------------
  
  # The theme to use for HTML and HTML Help pages.  See the documentation for
  # a list of builtin themes.
  #
  html_theme = 'sphinx_rtd_theme'
  
  # Add any paths that contain custom static files (such as style sheets) here,
  # relative to this directory. They are copied after the builtin static files,
  # so a file named "default.css" will overwrite the builtin "default.css".
  html_static_path = ['_static']
  
  # breathe_projects = {
  #     "PopSift": "../../doxygen/xml/",
  # }
  
  # Breathe Configuration
  breathe_default_project = 'PopSift'
subject: fix biblio build