old_contents: # Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
  # Spack Project Developers. See the top-level COPYRIGHT file for details.
  #
  # SPDX-License-Identifier: (Apache-2.0 OR MIT)
  
  from spack import *
  
  
  class Bismark(Package):
      """A tool to map bisulfite converted sequence reads and determine cytosine
      methylation states"""
  
      homepage = "https://www.bioinformatics.babraham.ac.uk/projects/bismark"
      url      = "https://github.com/FelixKrueger/Bismark/archive/0.19.0.tar.gz"
  
      version('0.19.0', sha256='91707737f96a0574956a282b635abad7560e7d90bee188a67a7807b2470deae2')
      version('0.18.2', sha256='83391c5b5af33047178e7774ac25f5a69ce9315c13ae02f016baf7c50b73e702')
  
      depends_on('bowtie2', type='run')
      depends_on('perl', type='run')
      depends_on('samtools', type='run')
  
      def install(self, spec, prefix):
          mkdirp(prefix.bin)
          install('bam2nuc', prefix.bin)
          install('bismark', prefix.bin)
          install('bismark_genome_preparation', prefix.bin)
          install('bismark_methylation_extractor', prefix.bin)
          install('bismark2bedGraph', prefix.bin)
          install('bismark2report', prefix.bin)
          install('bismark2summary', prefix.bin)
          install('coverage2cytosine', prefix.bin)
          install('deduplicate_bismark', prefix.bin)
          install('filter_non_conversion', prefix.bin)
          install('NOMe_filtering', prefix.bin)
  
new_contents: # Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
  # Spack Project Developers. See the top-level COPYRIGHT file for details.
  #
  # SPDX-License-Identifier: (Apache-2.0 OR MIT)
  
  from spack import *
  
  
  class Bismark(Package):
      """A tool to map bisulfite converted sequence reads and determine cytosine
      methylation states"""
  
      homepage = "https://www.bioinformatics.babraham.ac.uk/projects/bismark"
      url      = "https://github.com/FelixKrueger/Bismark/archive/0.23.0.tar.gz"
  
      version('0.23.0', sha256='ea1625808487c1442dbf825d9cbe5c0cbc37ea5bd1460f59e1e0ccc80cc01c9e')
      version('0.19.0', sha256='91707737f96a0574956a282b635abad7560e7d90bee188a67a7807b2470deae2')
      version('0.18.2', sha256='83391c5b5af33047178e7774ac25f5a69ce9315c13ae02f016baf7c50b73e702')
  
      depends_on('bowtie2', type='run')
      depends_on('perl', type='run')
      depends_on('samtools', type='run')
  
      def install(self, spec, prefix):
          mkdirp(prefix.bin)
          install('bam2nuc', prefix.bin)
          install('bismark', prefix.bin)
          install('bismark_genome_preparation', prefix.bin)
          install('bismark_methylation_extractor', prefix.bin)
          install('bismark2bedGraph', prefix.bin)
          install('bismark2report', prefix.bin)
          install('bismark2summary', prefix.bin)
          install('coverage2cytosine', prefix.bin)
          install('deduplicate_bismark', prefix.bin)
          install('filter_non_conversion', prefix.bin)
          install('NOMe_filtering', prefix.bin)
  
subject: add v0.23.0 (#24414)