old_contents: from setuptools import setup
  
  project_name = 'transfer_convert'
  __version__ = '0.1'
  
  long_description = """
  tranfer_convert
  ===============
  
  A collection of scripts for automating conversion to Photon-HDF5,
  archival and analysis of smFRET measurements using multiprocessing (each file
  is processed in a different CPU).
  """
  
  setup(
      name = project_name,
      version=__version__,
      author = 'Antonino Ingargiola',
      author_email = 'tritemio@gmail.com',
      url = 'https://github.com/Photon-HDF5/phforge',
      download_url = 'https://github.com/Photon-HDF5/phforge',
      install_requires = ['phconvert', 'ipython', 'nbconvert'],
      license = 'MIT',
      description = ("Automated Photon-HDF5 conversion and analysis of smFRET data."),
      long_description = long_description,
      platforms = ('Windows', 'Linux', 'Mac OS X'),
      classifiers=['Intended Audience :: Science/Research',
                   'Operating System :: OS Independent',
                   'Programming Language :: Python',
                   'Programming Language :: Python :: 3.6',
                   'Topic :: Scientific/Engineering',
                   ],
      py_modules = ['nbrun', 'analyze', 'transfer', 'batch_convert',
                    'batch_analyze'],
      scripts=['analyze.py', 'transfer.py', 'batch_analyze.py', 'batch_convert.py'],
      #zip_safe = False,
  )
  
new_contents: from setuptools import setup
  
  project_name = 'transfer_convert'
  __version__ = '0.1'
  
  long_description = """
  tranfer_convert
  ===============
  
  A collection of scripts for automating conversion to Photon-HDF5,
  archival and analysis of smFRET measurements using multiprocessing (each file
  is processed in a different CPU).
  """
  
  setup(
      name = project_name,
      version=__version__,
      author = 'Antonino Ingargiola',
      author_email = 'tritemio@gmail.com',
      url = 'https://github.com/multispot-software/transfer_convert',
      download_url = 'https://github.com/multispot-software/transfer_convert',
      install_requires = ['phconvert', 'ipython', 'nbconvert'],
      license = 'MIT',
      description = ("Automated Photon-HDF5 conversion and analysis of smFRET data."),
      long_description = long_description,
      platforms = ('Windows', 'Linux', 'Mac OS X'),
      classifiers=['Intended Audience :: Science/Research',
                   'Operating System :: OS Independent',
                   'Programming Language :: Python',
                   'Programming Language :: Python :: 3.6',
                   'Topic :: Scientific/Engineering',
                   ],
      py_modules = ['nbrun', 'analyze', 'transfer', 'batch_convert',
                    'batch_analyze'],
      scripts=['analyze.py', 'transfer.py', 'batch_analyze.py', 'batch_convert.py'],
      #zip_safe = False,
  )
  
subject: Fix links in setup.py