old_contents: """A setuptools based setup module, template copied from https://github.com/pypa/sampleproject
  
  See also:
  https://packaging.python.org/en/latest/distributing.html
  """
  
  from setuptools import setup, find_packages
  from codecs import open
  from os import path
  
  here = path.abspath(path.dirname(__file__))
  
  # Get the long description from the README file
  with open(path.join(here, 'README.md'), encoding='utf-8') as f:
      long_description = f.read()
  
  setup(
      name='wc_utilities',
  
      version='0.0.1a1',
  
      description='Utilities for whole-cell modeling components',
      long_description=long_description,
  
      # The project's main homepage.
      url='https://github.com/KarrLab',
  
      author='Arthur Goldberg',
      author_email='Arthur.Goldberg@mssm.edu',
  
      # Choose your license
      license='MIT',
  
      # See https://pypi.python.org/pypi?%3Aaction=list_classifiers
      classifiers=[
          'Development Status :: 3 - Alpha',
  
          # Indicate who your project is intended for
          'Intended Audience :: Developers',
          'Topic :: Software Development :: Whole-cell Models',
  
          # Pick your license as you wish (should match "license" above)
          'License :: OSI Approved :: MIT License',
  
          'Programming Language :: Python :: 2',
          'Programming Language :: Python :: 2.7',
          'Programming Language :: Python :: 3',
          'Programming Language :: Python :: 3.3',
          'Programming Language :: Python :: 3.4',
          'Programming Language :: Python :: 3.5',
      ],
      
      keywords='whole-cell modeling',
  
      packages=find_packages(exclude=['docs', 'tests']),
  
      install_requires='configobj PyYAML numpy six enum34'.split() ,
  
  )
new_contents: """A setuptools based setup module, template copied from https://github.com/pypa/sampleproject
  
  See also:
  https://packaging.python.org/en/latest/distributing.html
  """
  
  from setuptools import setup, find_packages
  from codecs import open
  from os import path
  
  here = path.abspath(path.dirname(__file__))
  
  # Get the long description from the README file
  with open(path.join(here, 'README.md'), encoding='utf-8') as f:
      long_description = f.read()
  
  setup(
      name='wc_utilities',
  
      version='0.0.1a1',
  
      description='Utilities for whole-cell modeling components',
      long_description=long_description,
  
      # The project's main homepage.
      url='https://github.com/KarrLab',
  
      author='Arthur Goldberg',
      author_email='Arthur.Goldberg@mssm.edu',
  
      # Choose your license
      license='MIT',
  
      # See https://pypi.python.org/pypi?%3Aaction=list_classifiers
      classifiers=[
          'Development Status :: 3 - Alpha',
  
          # Indicate who your project is intended for
          'Intended Audience :: Developers',
          'Topic :: Software Development :: Whole-cell Models',
  
          # Pick your license as you wish (should match "license" above)
          'License :: OSI Approved :: MIT License',
  
          'Programming Language :: Python :: 2',
          'Programming Language :: Python :: 2.7',
          'Programming Language :: Python :: 3',
          'Programming Language :: Python :: 3.3',
          'Programming Language :: Python :: 3.4',
          'Programming Language :: Python :: 3.5',
      ],
      
      keywords='whole-cell modeling',
  
      # packages not prepared yet
      # packages=find_packages(exclude=['docs', 'tests']),
  
      install_requires='configobj PyYAML numpy six enum34'.split() ,
  
  )
subject: remove doc & tests from packages, as they don't have requirements.txt, yet