old_contents: from ontobio.ontol_factory import OntologyFactory
  from networkx.algorithms.dag import ancestors
  from ontobio.graph_io import GraphRenderer
  
  PLOIDY = 'PATO:0001374'
  
  Y_SHAPED = 'PATO:0001201'
  
  def test_remote_sparql():
      """
      reconstitution test
      """
      factory = OntologyFactory()
      # default method is sparql
      ont = factory.create('pato')
      g = ont.get_graph()
      info = g.node[PLOIDY]
      print(str(info))
      nodes = g.nodes()
      print(len(nodes))
      assert len(nodes) > 100
      nbrs = g.successors(PLOIDY)
      print("SUCC:"+str(nbrs))
      parents = g.predecessors(PLOIDY)
      print("PRED:"+str(parents))
      assert parents == ['PATO:0001396']
      ancs = ancestors(g, PLOIDY)
      print("ANCS:"+str(ancs))
      assert 'PATO:0000001' in ancs
      print(g)
      Q = ['.*shape.*']
      w = GraphRenderer.create('tree')
  
      shapes1 = ont.resolve_names(Q, is_regex=True, is_remote=False)
      print("SHAPE Q:"+str(shapes1))
      show_nodes(w, g, shapes1)
      assert Y_SHAPED in shapes1
      
      shapes2 = ont.resolve_names(Q, is_regex=True, is_remote=True)
      print("SHAPE Q:"+str(shapes2))
      show_nodes(w, g, shapes2)
      assert Y_SHAPED in shapes2
  
  def show_nodes(w, g, ids):
      for id in ids:
          print(w.render_noderef(g, id))
      
      
  
  
new_contents: from ontobio.ontol_factory import OntologyFactory
  from networkx.algorithms.dag import ancestors
  from ontobio.io.ontol_renderers import GraphRenderer
  
  PLOIDY = 'PATO:0001374'
  
  Y_SHAPED = 'PATO:0001201'
  
  def test_remote_sparql():
      """
      reconstitution test
      """
      factory = OntologyFactory()
      # default method is sparql
      ont = factory.create('pato')
      g = ont.get_graph()
      info = g.node[PLOIDY]
      print(str(info))
      nodes = g.nodes()
      print(len(nodes))
      assert len(nodes) > 100
      nbrs = g.successors(PLOIDY)
      print("SUCC:"+str(nbrs))
      parents = g.predecessors(PLOIDY)
      print("PRED:"+str(parents))
      assert parents == ['PATO:0001396']
      ancs = ancestors(g, PLOIDY)
      print("ANCS:"+str(ancs))
      assert 'PATO:0000001' in ancs
      print(g)
      Q = ['.*shape.*']
      w = GraphRenderer.create('tree')
  
      shapes1 = ont.resolve_names(Q, is_regex=True, is_remote=False)
      print("SHAPE Q:"+str(shapes1))
      show_nodes(w, ont, shapes1)
      assert Y_SHAPED in shapes1
      
      shapes2 = ont.resolve_names(Q, is_regex=True, is_remote=True)
      print("SHAPE Q:"+str(shapes2))
      show_nodes(w, ont, shapes2)
      assert Y_SHAPED in shapes2
  
  def show_nodes(w, ont, ids):
      for id in ids:
          print(w.render_noderef(ont, id))
  
subject: update to refactor