old_contents: from setuptools import setup
  
  def readme():
      with open('README.rst') as f:
          return f.read()
      
  setup(name='RILseq',
        version='0.64',
        description='Processing RILSeq experiments results',
        long_description=readme(),
        classifiers=[
          'Development Status :: 3 - Alpha',
          'License :: OSI Approved :: MIT License',
          'Programming Language :: Python :: 2.7',
          'Topic :: Scientific/Engineering :: Bio-Informatics',
        ],
        scripts=[
          'bin/map_chimeric_fragments.py', 
  	'bin/map_single_fragments.py',
          'bin/RILseq_significant_regions.py',
          'bin/generate_genes_gff.py',
          'bin/generate_transcripts_gff.py',
          'bin/plot_circos_plot.py',
          'bin/generate_BED_file_of_endpoints.py',
          'bin/count_chimeric_reads_per_gene.py',
          'bin/get_sequences_for_meme.py',
          'bin/plot_regions_interactions.py'],
        url='http://github.com/asafpr/RILseq',
        author='Asaf Peer',
        author_email='asafpr@gmail.com',
        license='MIT',
        packages=['RILseq'],
        install_requires=[
          'scipy', 'numpy', 'pysam>=0.14.1', 'biopython'],
        include_package_data=True,
        zip_safe=False)
  
new_contents: from setuptools import setup
  
  def readme():
      with open('README.rst') as f:
          return f.read()
      
  setup(name='RILseq',
        version='0.65',
        description='Processing RILSeq experiments results',
        long_description=readme(),
        classifiers=[
          'Development Status :: 3 - Alpha',
          'License :: OSI Approved :: MIT License',
          'Programming Language :: Python :: 2.7',
          'Topic :: Scientific/Engineering :: Bio-Informatics',
        ],
        scripts=[
          'bin/map_chimeric_fragments.py', 
  	'bin/map_single_fragments.py',
          'bin/RILseq_significant_regions.py',
          'bin/generate_genes_gff.py',
          'bin/generate_transcripts_gff.py',
          'bin/plot_circos_plot.py',
          'bin/generate_BED_file_of_endpoints.py',
          'bin/count_chimeric_reads_per_gene.py',
          'bin/get_sequences_for_meme.py',
          'bin/plot_regions_interactions.py'],
        url='http://github.com/asafpr/RILseq',
        author='Asaf Peer',
        author_email='asafpr@gmail.com',
        license='MIT',
        packages=['RILseq'],
        install_requires=[
          'scipy', 'numpy', 'pysam>=0.14.1', 'biopython'],
        include_package_data=True,
        zip_safe=False)
  
subject: update to version 0.65