old_contents: #!/usr/bin/env python
  
  import setuptools
  
  setuptools.setup(
      name='cflib-pomo',
      version='1.1',
      author='Dominik Schrempf',
      author_email='dominik.schrempf@gmail.com',
      description='Counts file library and conversion scripts.',
      license="MIT",
      keywords="counts fasta files multi sequence alignments",
      url='https://github.com/pomo-dev/cflib',
      packages=setuptools.find_packages(),
      long_description=open('README.md', 'r').read(),
      long_description_content_type="text/markdown",
      install_requires=["scipy", "numpy", "pysam"],
      classifiers=['Intended Audience :: Science/Research'],
      scripts=["scripts/CountsToFasta.py", "scripts/FastaToCounts.py",
               "scripts/FastaToVCF.py", "scripts/FastaVCFToCounts.py",
               "scripts/FilterMSA.py", "scripts/GPToCounts.py",
               "scripts/MSAToCounts.py"])
  
new_contents: #!/usr/bin/env python
  
  import setuptools
  
  setuptools.setup(
      name='cflib-pomo',
      version='1.2',
      author='Dominik Schrempf',
      author_email='dominik.schrempf@gmail.com',
      description='Counts file library and conversion scripts.',
      license="MIT",
      keywords="counts fasta files multi sequence alignments",
      url='https://github.com/pomo-dev/cflib',
      packages=setuptools.find_packages(),
      long_description=open('README.md', 'r').read(),
      long_description_content_type="text/markdown",
      install_requires=["scipy", "numpy", "pysam"],
      classifiers=['Intended Audience :: Science/Research'],
      scripts=["scripts/CountsToFasta.py", "scripts/FastaToCounts.py",
               "scripts/FastaToVCF.py", "scripts/FastaVCFToCounts.py",
               "scripts/FilterMSA.py", "scripts/GPToCounts.py",
               "scripts/MSAToCounts.py"])
  
subject: Bump version number.