old_contents: #!/usr/bin/python
  """ignet setup script."""
  
  from distutils.core import setup, Extension
  
  # Package Version
  from ignet import __version__ as version
  alignment_module = Extension('ignet.align.align', sources=['ignet/align/alignment.c'])
  setup(
      name='ignet',
      version=version,
  
      description=('A package to clonal relate immunoglobulins'),
      long_description=open('README.md').read(),
      author='Federico Tomasi',
      author_email='federico.tomasi@dibris.unige.it',
      maintainer='Federico Tomasi',
      maintainer_email='federico.tomasi@dibris.unige.it',
      url='https://github.com/slipguru/ignet',
      download_url='https://github.com/slipguru/ignet/tarball/'+version,
      classifiers=[
          'Development Status :: 4 - Beta',
          'Environment :: Console',
          'Intended Audience :: Science/Research',
          'Intended Audience :: Developers',
          'Programming Language :: Python',
          'License :: OSI Approved :: BSD License',
          'Topic :: Software Development',
          'Topic :: Scientific/Engineering :: Bio-Informatics',
          'Operating System :: POSIX',
          'Operating System :: Unix',
          'Operating System :: MacOS'
      ],
      license='FreeBSD',
      packages=['ignet', 'ignet.core', 'ignet.utils', 'ignet.align'],
      requires=['numpy (>=1.10.1)',
                'scipy (>=0.16.1)',
                'sklearn (>=0.17)',
                'matplotlib (>=1.5.1)',
                'seaborn (>=0.7.0)'],
      scripts=['scripts/ig_run.py', 'scripts/ig_analysis.py'],
      ext_modules=[alignment_module]
  )
  
new_contents: #!/usr/bin/python
  """ignet setup script."""
  
  from distutils.core import setup, Extension
  
  # Package Version
  from ignet import __version__ as version
  alignment_module = Extension('ignet.align.align', sources=['ignet/align/alignment.c'])
  setup(
      name='ignet',
      version=version,
  
      description=('A package to clonal relate immunoglobulins'),
      long_description=open('README.md').read(),
      author='Federico Tomasi',
      author_email='federico.tomasi@dibris.unige.it',
      maintainer='Federico Tomasi',
      maintainer_email='federico.tomasi@dibris.unige.it',
      url='https://github.com/slipguru/ignet',
      download_url='https://github.com/slipguru/ignet/tarball/'+version,
      classifiers=[
          'Development Status :: 4 - Beta',
          'Environment :: Console',
          'Intended Audience :: Science/Research',
          'Intended Audience :: Developers',
          'Programming Language :: Python',
          'License :: OSI Approved :: BSD License',
          'Topic :: Software Development',
          'Topic :: Scientific/Engineering :: Bio-Informatics',
          'Operating System :: POSIX',
          'Operating System :: Unix',
          'Operating System :: MacOS'
      ],
      license='FreeBSD',
      packages=['ignet', 'ignet.core', 'ignet.utils', 'ignet.align',
                'ignet.externals', 'ignet.models', 'ignet.parallel', 'ignet.plotting'],
      requires=['numpy (>=1.10.1)',
                'scipy (>=0.16.1)',
                'sklearn (>=0.17)',
                'matplotlib (>=1.5.1)',
                'seaborn (>=0.7.0)'],
      scripts=['scripts/ig_run.py', 'scripts/ig_analysis.py'],
      ext_modules=[alignment_module]
  )
  
subject: update setup