old_contents: import os
  from setuptools import setup, find_packages
  
  
  # Nice hack to retrieve docstring and version without importing the module
  __version__ = None
  __doc__ = ''
  read_doc = 0  # Not started, in progress, done
  init_file = os.path.join(os.path.dirname(__file__), 'phasm', '__init__.py')
  for line in open(init_file).readlines():
      if line.startswith('version_info') or line.startswith('__version__'):
          exec(line.strip())
      elif line.startswith('"""'):
          if read_doc == 0:
              read_doc = 1
              line = line.lstrip('"')
          elif read_doc == 1:
              read_doc = 2
      if read_doc == 1:
          __doc__ += line
  
  
  setup(
      name='phasm',
      version=__version__,
      packages=find_packages(),
  
      author='Lucas van Dijk',
      author_email='info@lucasvandijk.nl',
      url='https://bitbucket.org/tudelft-bioinformatics/phasm',
  
      description='Haplotype-aware de novo genome assembler for aneuploid '
                  'organisms from long read data.',
      long_description=__doc__.strip(),
      license='MIT',
  
      # Dependencies
      install_requires=[
          'networkx>=1.9',
      ],
      setup_requires=['pytest-runner'],
      test_requires=['pytest']
  )
  
new_contents: import os
  from setuptools import setup, find_packages
  
  
  # Nice hack to retrieve docstring and version without importing the module
  __version__ = None
  __doc__ = ''
  read_doc = 0  # Not started, in progress, done
  init_file = os.path.join(os.path.dirname(__file__), 'phasm', '__init__.py')
  for line in open(init_file).readlines():
      if line.startswith('version_info') or line.startswith('__version__'):
          exec(line.strip())
      elif line.startswith('"""'):
          if read_doc == 0:
              read_doc = 1
              line = line.lstrip('"')
          elif read_doc == 1:
              read_doc = 2
      if read_doc == 1:
          __doc__ += line
  
  
  setup(
      name='phasm',
      version=__version__,
      packages=find_packages(),
  
      author='Lucas van Dijk',
      author_email='info@lucasvandijk.nl',
      url='https://bitbucket.org/tudelft-bioinformatics/phasm',
  
      description='Haplotype-aware de novo genome assembler for aneuploid '
                  'organisms from long read data.',
      long_description=__doc__.strip(),
      license='MIT',
  
      # Dependencies
      install_requires=[
          'networkx>=1.9',
      ],
      setup_requires=['pytest-runner'],
      test_requires=['pytest', 'pytest-cov']
  )
  
subject: Add pytest coverage analyser