new_contents: #!/usr/bin/python
  
  import argparse
  import re
  import pysam
  import os
  import string
  from pysam import VariantFile
  import itertools
  
  """
  annotate_gwas_results_from_vcf.py This script will take a vcf file and gwas results and add additional columns from a 
  SnpEff annotated VCF
  """
  
subject: Create annotate_gwas_results_from_vcf.py