old_contents: import os
  import sys
  from setuptools import setup
  
  version_py = os.path.join(os.path.dirname(__file__), 'trackhub', 'version.py')
  version = open(version_py).read().strip().split('=')[-1].replace('"','')
  
  long_description = """
  Create and manage UCSC track hubs from Python
  """
  
  setup(
      name="trackhub",
      version=version,
      install_requires=[i.strip() for i in open('requirements.txt') if not i.startswith('#')],
      packages=['trackhub',
                'trackhub.test',
                'trackhub.test.data',
               ],
      author="Ryan Dale",
      description=long_description,
      long_description=long_description,
      url="http://github.com/daler/trackhub",
      package_data = {'trackhub':["test/data/*"]},
      package_dir = {"trackhub": "trackhub"},
      license = 'MIT',
      author_email="dalerr@niddk.nih.gov",
      classifiers=[
          'Intended Audience :: Science/Research',
          'License :: OSI Approved :: GNU General Public License (GPL)',
          'Topic :: Scientific/Engineering :: Bio-Informatics',
          'Programming Language :: Python',
          'Programming Language :: Python :: 2',
          'Programming Language :: Python :: 2.7',
          'Programming Language :: Python :: 3',
          'Topic :: Software Development :: Libraries :: Python Modules',
      ],
  )
  
new_contents: import os
  import sys
  from setuptools import setup
  
  version_py = os.path.join(os.path.dirname(__file__), 'trackhub', 'version.py')
  version = open(version_py).read().strip().split('=')[-1].replace('"','')
  
  long_description = """
  Create and manage UCSC track hubs from Python
  """
  
  setup(
      name="trackhub",
      version=version,
      install_requires=[i.strip() for i in open('requirements.txt') if not i.startswith('#')],
      packages=['trackhub',
                'trackhub.test',
                'trackhub.test.data',
               ],
      author="Ryan Dale",
      description=long_description,
      long_description=long_description,
      url="http://github.com/daler/trackhub",
      include_package_data=True,
      package_data = {'trackhub':["test/data/*"]},
      package_dir = {"trackhub": "trackhub"},
      scripts=["trackhub/trackhub_from_excel"],
      license = 'MIT',
      author_email="dalerr@niddk.nih.gov",
      classifiers=[
          'Intended Audience :: Science/Research',
          'License :: OSI Approved :: GNU General Public License (GPL)',
          'Topic :: Scientific/Engineering :: Bio-Informatics',
          'Programming Language :: Python',
          'Programming Language :: Python :: 2',
          'Programming Language :: Python :: 2.7',
          'Programming Language :: Python :: 3',
          'Topic :: Software Development :: Libraries :: Python Modules',
      ],
  )
  
subject: update setup.py to install cmdline script