old_contents: #!/usr/bin/env python
  # -*- coding: UTF-8 -*-
  """Setup for PyPI usage."""
  
  import os.path as op
  
  from glob import glob
  from setuptools import setup
  from setup_helper import SetupHelper
  
  
  NAME = "goatools"
  CLASSIFIERS = [
      'Development Status :: 4 - Beta',
      'Intended Audience :: Science/Research',
      'License :: OSI Approved :: BSD License',
      'Programming Language :: Python',
      'Programming Language :: Python :: 2',
      'Programming Language :: Python :: 3',
      'Topic :: Scientific/Engineering :: Bio-Informatics',
      ]
  
  # Use the helper
  HLPR = SetupHelper(initfile="goatools/__init__.py", readmefile="README.md")
  
  SETUP_DIR = op.abspath(op.dirname(__file__))
  REQUIREMENTS = ['wget'] + \
                 [x.strip() for x in open(op.join(SETUP_DIR, 'requirements.txt')).readlines()]
  
  setup(
      NAME=NAME,
      version=HLPR.version,
      author=HLPR.author,
      author_email=HLPR.email,
      license=HLPR.license,
      long_description=HLPR.long_description,
      packages=[
          NAME,
          NAME + ".godag",
          NAME + ".gosubdag",
          NAME + ".gosubdag.plot",
          NAME + ".gosubdag.rpt",
          NAME + ".test_data",
          NAME + ".test_data.sections",
          NAME + ".test_data.cli",
          NAME + ".cli",
          NAME + ".rpt",
          NAME + ".anno",
          NAME + ".anno.extensions",
          NAME + ".grouper",
          NAME + ".parsers"],
      include_package_data=True,
      package_data={"goatools.test_data.nbt_3102": ["*.*"]},
      scripts=glob('scripts/*.py'),
      classifiers=CLASSIFIERS,
      url='http://github.com/tanghaibao/goatools',
      description="Python scripts to find enrichment of GO terms",
      install_requires=REQUIREMENTS
  )
  
new_contents: #!/usr/bin/env python
  # -*- coding: UTF-8 -*-
  """Setup for PyPI usage."""
  
  import os.path as op
  
  from glob import glob
  from setuptools import setup
  from setup_helper import SetupHelper
  
  
  NAME = "goatools"
  CLASSIFIERS = [
      'Development Status :: 4 - Beta',
      'Intended Audience :: Science/Research',
      'License :: OSI Approved :: BSD License',
      'Programming Language :: Python',
      'Programming Language :: Python :: 2',
      'Programming Language :: Python :: 3',
      'Topic :: Scientific/Engineering :: Bio-Informatics',
      ]
  
  # Use the helper
  HLPR = SetupHelper(initfile="goatools/__init__.py", readmefile="README.md")
  
  SETUP_DIR = op.abspath(op.dirname(__file__))
  REQUIREMENTS = ['wget'] + \
                 [x.strip() for x in open(op.join(SETUP_DIR, 'requirements.txt')).readlines()]
  
  setup(
      name=NAME,
      version=HLPR.version,
      author=HLPR.author,
      author_email=HLPR.email,
      license=HLPR.license,
      long_description=HLPR.long_description,
      packages=[
          NAME,
          NAME + ".godag",
          NAME + ".gosubdag",
          NAME + ".gosubdag.plot",
          NAME + ".gosubdag.rpt",
          NAME + ".test_data",
          NAME + ".test_data.sections",
          NAME + ".test_data.cli",
          NAME + ".cli",
          NAME + ".rpt",
          NAME + ".anno",
          NAME + ".anno.extensions",
          NAME + ".grouper",
          NAME + ".parsers"],
      include_package_data=True,
      package_data={"goatools.test_data.nbt_3102": ["*.*"]},
      scripts=glob('scripts/*.py'),
      classifiers=CLASSIFIERS,
      url='http://github.com/tanghaibao/goatools',
      description="Python scripts to find enrichment of GO terms",
      install_requires=REQUIREMENTS
  )
  
subject: Change NAME => name