old_contents: ###################################
  # tellurium setup script
  #
  # develop install via
  # pip install -e .
  ###################################
  from setuptools import setup  # allows 'python setup.py develop'
  import os
  try:
      with open(os.path.join(os.path.dirname(__file__), 'VERSION.txt'), 'r') as f:
          version = f.read().rstrip()
  except IOError:
      # fallback location
      with open(os.path.join(os.path.dirname(__file__), 'tellurium/VERSION.txt'), 'r') as f:
          version = f.read().rstrip()
  
  setup(name='tellurium',
        version=version,
        author='J. Kyle Medley, Kiri Choi, Matthias König, Lucian Smith, Herbert M. Sauro',
        description='Tellurium: An biological modeling environment for Python',
        url='http://tellurium.analogmachine.org/',
        packages=[
            'tellurium',
            'tellurium.analysis',
            'tellurium.teio',
            'tellurium.sedml',
            'tellurium.notebooks',
            'tellurium.optimization',
            'tellurium.visualization',
            'tellurium.sedml',
            'tellurium.tests',
        ],
        package_data={
            "tellurium": ["*.txt"],
            "tellurium.sedml": ["templates/*.template"],
        },
        )
  
new_contents: ###################################
  # tellurium setup script
  #
  # develop install via
  # pip install -e .
  ###################################
  from setuptools import setup  # allows 'python setup.py develop'
  import os
  try:
      with open(os.path.join(os.path.dirname(__file__), 'VERSION.txt'), 'r') as f:
          version = f.read().rstrip()
  except IOError:
      # fallback location
      with open(os.path.join(os.path.dirname(__file__), 'tellurium/VERSION.txt'), 'r') as f:
          version = f.read().rstrip()
  
  setup(name='tellurium',
        version=version,
        author='J. Kyle Medley, Kiri Choi, Matthias König, Lucian Smith, Herbert M. Sauro',
        description='Tellurium: An biological modeling environment for Python',
        url='http://tellurium.analogmachine.org/',
        packages=[
            'tellurium',
            'tellurium.analysis',
            'tellurium.teio',
            'tellurium.sedml',
            'tellurium.notebooks',
            'tellurium.optimization',
            'tellurium.visualization',
            'tellurium.sedml',
            'tellurium.tests',
        ],
        package_data={
            "tellurium": ["*.txt"],
            "tellurium.sedml": ["templates/*.template"],
        },
        install_requires=['pandas>=0.19.2', 'matplotlib>=2.0.0', 'appdirs>=1.4.3']
        )
  
subject: update deps