old_contents: #!/usr/bin/env python
  # -*- coding: latin-1 -*-
  #
  # Copyright John Reid 2012
  #
  
  """
  distutils setup script
  """
  
  from setuptools import setup
  
  setup(
      name              = 'bioinf-utilities',
      version           = '1.3.22',
      description       = 'Some utilities for sequence analysis',
      long_description  = open('README.txt').read(),
      author            = 'John Reid',
      author_email      = 'johnbaronreid@netscape.net',
      scripts = [
          'scripts/bed-add-names',
          'scripts/bed-get-regions',
          'scripts/bed-info',
          'scripts/bedtools2fasta',
          'scripts/bgr2bed',
          'scripts/make-GREAT-bg',
          'scripts/seq-filter-empty',
          'scripts/seq-filter-short',
          'scripts/seq-head',
          'scripts/seq-info',
          'scripts/seq-mask-lower',
          'scripts/seq-match-lengths',
          'scripts/seq-shorten',
          'scripts/seq-shuffle',
          'scripts/seq-strip-Ns',
          'scripts/seq-subtract',
          'scripts/seq-tally',
          'scripts/seq-upper',
          'scripts/subsample',
      ],
      url               = 'http://sysbio.mrc-bsu.cam.ac.uk/group/index.php/John_Reid',
      package_dir       = {'': 'python'},
      packages          = ['bioinfutils', 'corebio'],
      install_requires  = ['cookbook'],
  )
  
new_contents: #!/usr/bin/env python
  # -*- coding: latin-1 -*-
  #
  # Copyright John Reid 2012
  #
  
  """
  distutils setup script
  """
  
  from setuptools import setup
  
  setup(
      name              = 'bioinf-utilities',
      version           = '1.3.22',
      description       = 'Some utilities for sequence analysis',
      long_description  = open('README.txt').read(),
      author            = 'John Reid',
      author_email      = 'johnbaronreid@netscape.net',
      scripts = [
          'scripts/bed-add-names',
          'scripts/bed-get-regions',
          'scripts/bed-info',
          'scripts/bedtools2fasta',
          'scripts/bgr2bed',
          'scripts/make-GREAT-bg',
          'scripts/seq-filter-empty',
          'scripts/seq-filter-short',
          'scripts/seq-head',
          'scripts/seq-info',
          'scripts/seq-mask-lower',
          'scripts/seq-match-lengths',
          'scripts/seq-shorten',
          'scripts/seq-shuffle',
          'scripts/seq-strip-Ns',
          'scripts/seq-subtract',
          'scripts/seq-tally',
          'scripts/seq-upper',
          'scripts/subsample',
      ],
      url               = 'http://sysbio.mrc-bsu.cam.ac.uk/group/index.php/John_Reid',
      package_dir       = {'': 'python'},
      packages          = ['bioinfutils', 'corebio'],
      install_requires  = ['cookbook'],
      package_data = {
          # Include corebio LICENSE
          'corebio': ['LICENSE.txt'],
  }
  )
  
subject: Include corebio LICENSE