old_contents: from ez_setup import use_setuptools
  use_setuptools()
  from setuptools import setup
  
  def main():
      setup(name='bioagents',
            version='0.0.1',
            description='Biological Reasoning Agents',
            long_description='Biological Reasoning Agents',
            author='Benjamin Gyori',
            author_email='benjamin_gyori@hms.harvard.edu',
            url='http://github.com/sorgerlab/bioagents',
            packages=['bioagents', 'bioagents.KQML', 'bioagents.TripsModule'],
            install_requires=['pysb', 'objectpath', 'rdflib', 'jnius-indra', 
                              'functools32', 'requests', 'lxml', 'suds'],
            include_package_data=True,
            keywords=['systems', 'biology', 'model', 'pathway', 'assembler', 'nlp', 
                      'mechanism', 'biochemistry'],
            classifiers=[
              'Development Status :: 4 - Beta',
              'Environment :: Console',
              'Intended Audience :: Science/Research',
              'License :: OSI Approved :: BSD License',
              'Operating System :: OS Independent',
              'Programming Language :: Python :: 2',
              'Topic :: Scientific/Engineering :: Bio-Informatics',
              'Topic :: Scientific/Engineering :: Chemistry',
              'Topic :: Scientific/Engineering :: Mathematics',
              ],
            )
  if __name__ == '__main__':
      main()
  
new_contents: from ez_setup import use_setuptools
  use_setuptools()
  from setuptools import setup
  
  def main():
      setup(name='bioagents',
            version='0.0.1',
            description='Biological Reasoning Agents',
            long_description='Biological Reasoning Agents',
            author='Benjamin Gyori',
            author_email='benjamin_gyori@hms.harvard.edu',
            url='http://github.com/sorgerlab/bioagents',
            packages=['bioagents', 'bioagents.KQML', 'bioagents.TripsModule'],
            install_requires=['pysb', 'objectpath', 'rdflib', 'jnius-indra', 
                              'functools32', 'requests', 'lxml', 'pandas', 'suds'],
            include_package_data=True,
            keywords=['systems', 'biology', 'model', 'pathway', 'assembler', 'nlp', 
                      'mechanism', 'biochemistry'],
            classifiers=[
              'Development Status :: 4 - Beta',
              'Environment :: Console',
              'Intended Audience :: Science/Research',
              'License :: OSI Approved :: BSD License',
              'Operating System :: OS Independent',
              'Programming Language :: Python :: 2',
              'Topic :: Scientific/Engineering :: Bio-Informatics',
              'Topic :: Scientific/Engineering :: Chemistry',
              'Topic :: Scientific/Engineering :: Mathematics',
              ],
            )
  if __name__ == '__main__':
      main()
  
subject: Update setup.py