old_contents: #!/usr/bin/env python
  # -*- coding: utf-8 -*-
  from __future__ import absolute_import
  from __future__ import with_statement
  
  import io
  import sys
  import warnings
  from setuptools import setup
  from setuptools import find_packages
  
  VERSION = 'undefined'
  install_requires = [
      'six',
      'intervaltree>=2.1.0',
      'pyfasta>=0.5.2',
      'numpy>=1.11.1',
  ]
  
  extra = {}
  
  with open('veppy/version.py') as f:
      for row in f.readlines():
          if row.startswith('VERSION'):
              exec(row)
  
  if sys.version_info < (2, 6):
      warnings.warn(
          'Python 2.5 is not officially supported by veppy. '
          'If you have any questions, please file an issue on GitHub.',
          DeprecationWarning)
  elif sys.version_info >= (3, 0):
      extra['use_2to3'] = True
  
  with io.open('README.rst', encoding="utf-8") as f:
      long_description = f.read()
  
  setup(
      name='veppy',
      version=VERSION,
      description='Variant Effect Prediction for Python',
      long_description=long_description,
      author='Solve, Inc.',
      author_email='contact@solvebio.com',
      url='https://github.com/solvebio/veppy',
      include_package_data=True,
      packages=find_packages(),
      package_dir={"veppy": "veppy"},
      platforms='any',
      install_requires=install_requires,
      # TODO: Test suite
      # test_suite='veppy.test.all',
      entry_points={
          # TODO: Command-line veppy
          # 'console_scripts': ['veppy = veppy.cli.main:main']
      },
      classifiers=[
          'Intended Audience :: Science/Research',
          'Operating System :: OS Independent',
          'Programming Language :: Python',
          'Topic :: Software Development :: Libraries :: Python Modules',
          'Topic :: Scientific/Engineering :: Bio-Informatics'
      ],
      **extra
  )
  
new_contents: #!/usr/bin/env python
  # -*- coding: utf-8 -*-
  from __future__ import absolute_import
  from __future__ import with_statement
  
  import io
  import sys
  import warnings
  from setuptools import setup
  from setuptools import find_packages
  
  VERSION = 'undefined'
  install_requires = [
      'six',
      'intervaltree>=2.1.0',
      'pyfasta>=0.5.2',
      'numpy>=1.11.1',
  ]
  
  extra = {}
  
  with open('veppy/version.py') as f:
      for row in f.readlines():
          if row.startswith('VERSION'):
              exec(row)
  
  if sys.version_info < (2, 6):
      warnings.warn(
          'Python 2.5 is not officially supported by veppy. '
          'If you have any questions, please file an issue on GitHub.',
          DeprecationWarning)
  elif sys.version_info >= (3, 0):
      extra['use_2to3'] = True
  
  with io.open('README.rst', encoding="utf-8") as f:
      long_description = f.read()
  
  setup(
      name='veppy',
      version=VERSION,
      description='Variant Effect Prediction for Python',
      long_description=long_description,
      author='Solve, Inc.',
      author_email='contact@solvebio.com',
      url='https://github.com/solvebio/veppy',
      include_package_data=True,
      packages=find_packages(),
      package_dir={"veppy": "veppy"},
      platforms='any',
      install_requires=install_requires,
      license='MIT',
      # TODO: Test suite
      # test_suite='veppy.test.all',
      entry_points={
          # TODO: Command-line veppy
          # 'console_scripts': ['veppy = veppy.cli.main:main']
      },
      classifiers=[
          'License :: OSI Approved :: MIT License',
          'Intended Audience :: Science/Research',
          'Operating System :: OS Independent',
          'Programming Language :: Python',
          'Topic :: Software Development :: Libraries :: Python Modules',
          'Topic :: Scientific/Engineering :: Bio-Informatics'
      ],
      **extra
  )
  
subject: add license to setup