old_contents: #
  # Pints setuptools script
  #
  # This file is part of PINTS.
  #  Copyright (c) 2017-2018, University of Oxford.
  #  For licensing information, see the LICENSE file distributed with the PINTS
  #  software package.
  #
  from setuptools import setup, find_packages
  
  # Load text for description and license
  with open('README.md') as f:
      readme = f.read()
  
  
  # Read version number from file
  def load_version():
      try:
          import os
          root = os.path.abspath(os.path.dirname(__file__))
          with open(os.path.join(root, 'pints', 'version'), 'r') as f:
              version = f.read().strip().split(',')
          return '.'.join([str(int(x)) for x in version])
      except Exception as e:
          raise RuntimeError('Unable to read version number (' + str(e) + ').')
  
  
  # Go!
  setup(
      # Module name (lowercase)
      name='pints',
      version=load_version(),
  
      # Description
      description='Probabilistic Inference in Noisy Time-Series',
      long_description=readme,
  
      # License name
      license='BSD 3-clause license',
  
      # Maintainer information
      # author='',
      # author_email='',
      maintainer='Michael Clerx',
      maintainer_email='michael.clerx@cs.ox.ac.uk',
      url='https://github.com/pints-team/pints',
  
      # Packages to include
      packages=find_packages(include=('pints', 'pints.*')),
  
      # Include non-python files (via MANIFEST.in)
      include_package_data=True,
  
      # List of dependencies
      install_requires=[
          'cma>=2',
          'numpy>=1.8',
          'scipy>=0.14',
          # Note: Matplotlib is loaded for debug plots, but to ensure pints runs
          # on systems without an attached display, it should never be imported
          # outside of plot() methods.
          'matplotlib>=1.5',
          'tabulate',
      ],
      extras_require={
          'docs': [
              'sphinx>=1.5, !=1.7.3',     # For doc generation
          ],
          'dev': [
              'flake8>=3',            # For code style checking
              'jupyter',              # For documentation and testing
              'nbconvert',
              'traitlets',
          ],
      },
  )
  
new_contents: #
  # Pints setuptools script
  #
  # This file is part of PINTS.
  #  Copyright (c) 2017-2018, University of Oxford.
  #  For licensing information, see the LICENSE file distributed with the PINTS
  #  software package.
  #
  from setuptools import setup, find_packages
  
  # Load text for description and license
  with open('README.md') as f:
      readme = f.read()
  
  
  # Read version number from file
  def load_version():
      try:
          import os
          root = os.path.abspath(os.path.dirname(__file__))
          with open(os.path.join(root, 'pints', 'version'), 'r') as f:
              version = f.read().strip().split(',')
          return '.'.join([str(int(x)) for x in version])
      except Exception as e:
          raise RuntimeError('Unable to read version number (' + str(e) + ').')
  
  
  # Go!
  setup(
      # Module name (lowercase)
      name='pints',
      version=load_version(),
  
      # Description
      description='Probabilistic Inference in Noisy Time-Series',
      long_description=readme,
      long_description_content_type='text/markdown',
  
      # License name
      license='BSD 3-clause license',
  
      # Maintainer information
      # author='',
      # author_email='',
      maintainer='Michael Clerx',
      maintainer_email='michael.clerx@cs.ox.ac.uk',
      url='https://github.com/pints-team/pints',
  
      # Packages to include
      packages=find_packages(include=('pints', 'pints.*')),
  
      # Include non-python files (via MANIFEST.in)
      include_package_data=True,
  
      # List of dependencies
      install_requires=[
          'cma>=2',
          'numpy>=1.8',
          'scipy>=0.14',
          # Note: Matplotlib is loaded for debug plots, but to ensure pints runs
          # on systems without an attached display, it should never be imported
          # outside of plot() methods.
          'matplotlib>=1.5',
          'tabulate',
      ],
      extras_require={
          'docs': [
              'sphinx>=1.5, !=1.7.3',     # For doc generation
          ],
          'dev': [
              'flake8>=3',            # For code style checking
              'jupyter',              # For documentation and testing
              'nbconvert',
              'traitlets',
          ],
      },
      python_requires='>=3.5',
  )
  
subject: Add content type for description & python requirements