old_contents: #!/usr/bin/env python
  # -*- coding: utf-8 -*-
  # @Author: oesteban
  # @Date:   2015-11-19 16:44:27
  """ fmriprep setup script """
  
  
  def main():
      """ Install entry-point """
      from io import open
      from os import path as op
      from inspect import getfile, currentframe
      from setuptools import setup, find_packages
      from setuptools.extension import Extension
      from numpy import get_include
  
      this_path = op.dirname(op.abspath(getfile(currentframe())))
  
      # Python 3: use a locals dictionary
      # http://stackoverflow.com/a/1463370/6820620
      ldict = locals()
      # Get version and release info, which is all stored in fmriprep/info.py
      module_file = op.join(this_path, 'fmriprep', 'info.py')
      with open(module_file) as infofile:
          pythoncode = [line for line in infofile.readlines() if not line.strip().startswith('#')]
          exec('\n'.join(pythoncode), globals(), ldict)
  
      extensions = [Extension(
          "fmriprep.utils.maths",
          ["fmriprep/utils/maths.pyx"],
          include_dirs=[get_include(), "/usr/local/include/"],
          library_dirs=["/usr/lib/"]),
      ]
  
      setup(
          name=ldict['__packagename__'],
          version=ldict['__version__'],
          description=ldict['__description__'],
          long_description=ldict['__longdesc__'],
          author=ldict['__author__'],
          author_email=ldict['__email__'],
          maintainer=ldict['__maintainer__'],
          maintainer_email=ldict['__email__'],
          url=ldict['__url__'],
          license=ldict['__license__'],
          classifiers=ldict['CLASSIFIERS'],
          download_url=ldict['DOWNLOAD_URL'],
          # Dependencies handling
          setup_requires=ldict['SETUP_REQUIRES'],
          install_requires=ldict['REQUIRES'],
          tests_require=ldict['TESTS_REQUIRES'],
          extras_require=ldict['EXTRA_REQUIRES'],
          dependency_links=ldict['LINKS_REQUIRES'],
          package_data={'fmriprep': ['data/*.json', 'viz/*.tpl', 'viz/*.json']},
          entry_points={'console_scripts': [
              'fmriprep=fmriprep.cli.run:main'
          ]},
          packages=find_packages(),
          zip_safe=False,
          ext_modules=extensions
      )
  
  
  if __name__ == '__main__':
      main()
  
new_contents: #!/usr/bin/env python
  # -*- coding: utf-8 -*-
  # @Author: oesteban
  # @Date:   2015-11-19 16:44:27
  """ fmriprep setup script """
  
  
  def main():
      """ Install entry-point """
      from io import open
      from os import path as op
      from inspect import getfile, currentframe
      from setuptools import setup, find_packages
      from setuptools.extension import Extension
      from numpy import get_include
  
      this_path = op.dirname(op.abspath(getfile(currentframe())))
  
      # Python 3: use a locals dictionary
      # http://stackoverflow.com/a/1463370/6820620
      ldict = locals()
      # Get version and release info, which is all stored in fmriprep/info.py
      module_file = op.join(this_path, 'fmriprep', 'info.py')
      with open(module_file) as infofile:
          pythoncode = [line for line in infofile.readlines() if not line.strip().startswith('#')]
          exec('\n'.join(pythoncode), globals(), ldict)
  
      extensions = [Extension(
          "fmriprep.utils.maths",
          ["fmriprep/utils/maths.pyx"],
          include_dirs=[get_include(), "/usr/local/include/"],
          library_dirs=["/usr/lib/"]),
      ]
  
      setup(
          name=ldict['__packagename__'],
          version=ldict['__version__'],
          description=ldict['__description__'],
          long_description=ldict['__longdesc__'],
          author=ldict['__author__'],
          author_email=ldict['__email__'],
          maintainer=ldict['__maintainer__'],
          maintainer_email=ldict['__email__'],
          url=ldict['__url__'],
          license=ldict['__license__'],
          classifiers=ldict['CLASSIFIERS'],
          download_url=ldict['DOWNLOAD_URL'],
          # Dependencies handling
          setup_requires=ldict['SETUP_REQUIRES'],
          install_requires=ldict['REQUIRES'],
          tests_require=ldict['TESTS_REQUIRES'],
          extras_require=ldict['EXTRA_REQUIRES'],
          dependency_links=ldict['LINKS_REQUIRES'],
          package_data={'fmriprep': ['data/*.json', 'data/*.nii.gz', 'data/*.mat',
                                     'viz/*.tpl', 'viz/*.json']},
          entry_points={'console_scripts': [
              'fmriprep=fmriprep.cli.run:main'
          ]},
          packages=find_packages(),
          zip_safe=False,
          ext_modules=extensions
      )
  
  
  if __name__ == '__main__':
      main()
  
subject: Add new data files to setup includes