old_contents: """
  these are the studies that may go into the next round of synthesis
  """
  
  studytreelist=[
  
  
  "2862_6649", # Scuticociliatia (Ciliates). Gao et al. 2014. MPE					## currently unrooted
  "2863_6650", # Oligohymenophorea (Ciliates). Gao et al. 2013. MPE				## currently unrooted
  "2739_6601", # blue-green algae (Cyanobacteria). Schirrmeister et al. BMC Evol. Biol. 2011.
  "2892_6700", # blue-green algae (Cyanobacteria). Rigonato et al. Env. Microbio. 2013.		## currently unrooted
  "2891_6699", # blue-green algae (Cyanobacteria). Rigonato et al. FEMS Microbiol Eco 2012.	## currently unrooted
  "2884_6688", # Mycobacterium. Sassi and Drancourt. BMC Genomics 2014.
  "2744_6343", # Dinophyceae. Haywood et al. J Phycol. 2003.
  "2882_6682", # Mycobacterium. Mendum et al. BMC Genomics 2014
  "2770_6417", # Plasmodium. Ollomo et al. PLoS Pathogens. 2009					## currently unrooted
  "2765_6399", # Bosminidae. Taylor et al. Limnology and Oceano. 2002.
  "2749_6353", # Chlorophyta. Tartar et al. 2002
  "2886_6694", # Holozoa. 
  "2792_6478", # Diatom
  "2790_6476", # Moraxella
  "2888_6697", # Rhizobium
  "2885_6690", # Life
  "2885_6692", #	Life
  "2787_6704", #	Bacteria
  "2759_6374", #	Apicomplexa
  "2883_6686", #	Bacillus marcescens
  "2793_6705", #	Cercozoa
  "2748_6351", #	Sphacelariales
  "2889_6698", #	Bacteria
  "2745_6345", #	Dinophysis
  "2775_6432", #	Opisthokonta
  "2750_6355", #	Botryococcus
  "2895_6706", # 	Bacteria
  "2895_6707", #	Bacteria
  "2880_6676",	#Stramenopiles
  "2484_6607",	#Amoebozoa
  "2557_6631", #	Dinoflagellata
  "2557_6639", #	Dinoflagellata
  "2737_6322", #	Nostocales
  "2738_6323", #	Oscillatoriales
  "2738_6324", #	Oscillatoriales
  "310_259", #	Eukaryota
  "2760_6375",	#Dinoflagellates
  "2846_6608",	#Bacteriodetes
  "2847_6609",#	Eukaryota
  "2847_6611", #	Eukaryota
  "2925_2925", #	Eukaryota
  "2618_6130", #	Dinoflagellata
  "2927_6760", #	Pseudokeronopsidae
  "2772_6421", #	Thalassiosirales
  
  
  ]
  
new_contents: """
  these are the studies that may go into the next round of synthesis
  """
  
  studytreelist=[
  
  
  "2862_6649", # Scuticociliatia (Ciliates). Gao et al. 2014. MPE					## currently unrooted
  "2863_6650", # Oligohymenophorea (Ciliates). Gao et al. 2013. MPE				## currently unrooted
  "2739_6601", # blue-green algae (Cyanobacteria). Schirrmeister et al. BMC Evol. Biol. 2011.
  "2892_6700", # blue-green algae (Cyanobacteria). Rigonato et al. Env. Microbio. 2013.		## currently unrooted
  "2891_6699", # blue-green algae (Cyanobacteria). Rigonato et al. FEMS Microbiol Eco 2012.	## currently unrooted
  "2884_6688", # Mycobacterium. Sassi and Drancourt. BMC Genomics 2014.
  "2744_6343", # Dinophyceae. Haywood et al. J Phycol. 2003.
  "2882_6682", # Mycobacterium. Mendum et al. BMC Genomics 2014
  "2770_6417", # Plasmodium. Ollomo et al. PLoS Pathogens. 2009					## currently unrooted
  "2765_6399", # Bosminidae. Taylor et al. Limnology and Oceano. 2002.
  "2749_6353", # Chlorophyta. Tartar et al. 2002
  "2886_6694", # Holozoa. 
  "2792_6478", # Diatom
  "2790_6476", # Moraxella
  "2888_6697", # Rhizobium
  "2885_6690", # Life
  "2885_6692", #	Life
  "2787_6704", #	Bacteria
  "2759_6374", #	Apicomplexa
  "2883_6686", #	Bacillus marcescens
  "2793_6705", #	Cercozoa
  "2748_6351", #	Sphacelariales
  "2889_6698", #	Bacteria
  "2745_6345", #	Dinophysis
  "2775_6432", #	Opisthokonta
  "2750_6355", #	Botryococcus
  "2895_6706", # 	Bacteria
  "2895_6707", #	Bacteria
  "2880_6676",	#Stramenopiles
  "2484_6607",	#Amoebozoa
  "2557_6631", #	Dinoflagellata
  "2557_6639", #	Dinoflagellata
  "2737_6322", #	Nostocales
  "2738_6323", #	Oscillatoriales
  "2738_6324", #	Oscillatoriales
  "310_259", #	Eukaryota
  "2760_6375",	#Dinoflagellates
  "2846_6608",	#Bacteriodetes
  "2847_6609",#	Eukaryota
  "2847_6611", #	Eukaryota
  "2925_2925", #	Eukaryota
  "2618_6130", #	Dinoflagellata
  "2927_6760", #	Pseudokeronopsidae
  "2772_6421", #	Thalassiosirales
  "2928_6761", #Cymbellales
  
  ]
  
subject: Update New_studies-microbes.py