old_contents: ###############################################################################
  # nemo_util.py: some utilities for handling NEMO snapshots
  ###############################################################################
  import os
  import numpy
  import tempfile
  import subprocess
  def read(filename,ext=None):
      """
      NAME:
         read
      PURPOSE:
         read a NEMO snapshot file
      INPUT:
         filename - name of the file
         ext= if set, 'nemo' for NEMO binary format, otherwise assumed ASCII; if not set, gleaned from extension
      OUTPUT:
         snapshots [nbody,ndim,nt]
      HISTORY:
         2015-11-18 - Written - Bovy (UofT)
      """
      if ext is None and filename.split('.')[-1] == 'nemo':
          ext= 'nemo'
      elif ext is None:
          ext= 'dat'
      # Convert to ASCII if necessary
      if ext.lower() == 'nemo':
          file_handle, asciifilename= tempfile.mkstemp()
          os.close(file_handle)
          stderr= open('/dev/null','w')
          try:
              subprocess.check_call(['s2a',filename,asciifilename])#,stderr=stderr)
          except subprocess.CalledProcessError:
              os.remove(asciifilename)
          finally:
              stderr.close()
      else:
          asciifilename= filename
      # Now read
      out= numpy.loadtxt(asciifilename,comments='#')
      if ext.lower() == 'nemo': os.remove(asciifilename)
      # Get the number of snapshots
      nt= (_wc(asciifilename)-out.shape[0])//13 # 13 comments/snapshot
      out= numpy.reshape(out,(nt,out.shape[0]//nt,out.shape[1]))
      return numpy.swapaxes(numpy.swapaxes(out,0,1),1,2)
  
  def _wc(filename):
      try:
          return int(subprocess.check_output(['wc','-l',filename]).split()[0])
      except subprocess.CalledProcessError:
          return numpy.nan
  
new_contents: ###############################################################################
  # nemo_util.py: some utilities for handling NEMO snapshots
  ###############################################################################
  import os
  import numpy
  import tempfile
  import subprocess
  def read(filename,ext=None,swapyz=False):
      """
      NAME:
         read
      PURPOSE:
         read a NEMO snapshot file
      INPUT:
         filename - name of the file
         ext= if set, 'nemo' for NEMO binary format, otherwise assumed ASCII; if not set, gleaned from extension
         swapyz= (False) if True, swap the y and z axes in the output (only for position and velocity)
      OUTPUT:
         snapshots [nbody,ndim,nt]
      HISTORY:
         2015-11-18 - Written - Bovy (UofT)
      """
      if ext is None and filename.split('.')[-1] == 'nemo':
          ext= 'nemo'
      elif ext is None:
          ext= 'dat'
      # Convert to ASCII if necessary
      if ext.lower() == 'nemo':
          file_handle, asciifilename= tempfile.mkstemp()
          os.close(file_handle)
          stderr= open('/dev/null','w')
          try:
              subprocess.check_call(['s2a',filename,asciifilename])#,stderr=stderr)
          except subprocess.CalledProcessError:
              os.remove(asciifilename)
          finally:
              stderr.close()
      else:
          asciifilename= filename
      # Now read
      out= numpy.loadtxt(asciifilename,comments='#')
      if ext.lower() == 'nemo': os.remove(asciifilename)
      if swapyz:
          out[:,[2,3]]= out[:,[3,2]]
          out[:,[5,6]]= out[:,[6,5]]
      # Get the number of snapshots
      nt= (_wc(asciifilename)-out.shape[0])//13 # 13 comments/snapshot
      out= numpy.reshape(out,(nt,out.shape[0]//nt,out.shape[1]))
      return numpy.swapaxes(numpy.swapaxes(out,0,1),1,2)
  
  def _wc(filename):
      try:
          return int(subprocess.check_output(['wc','-l',filename]).split()[0])
      except subprocess.CalledProcessError:
          return numpy.nan
  
subject: Add option to swap y and z dimensions