old_contents: #!/usr/bin/env python
  # -*- coding: utf-8 -*-
  
  import os
  from setuptools import setup
  import numpy
  
  # Version number
  version = '1.0'
  
  def read(fname):
      return open(os.path.join(os.path.dirname(__file__), fname)).read()
  
  setup(name = 'DGP',
        version = version,
        author = read('AUTHORS.txt'),
        author_email = "z.dai@sheffield.ac.uk",
        description = ("Deep Gaussian Process"),
        license = "BSD 3-clause",
        keywords = "deep learning",
        url = "",
        packages = ["deepgp",
                    "deepgp.inference",
                    "deepgp.models"],
        package_dir={'deepgp': 'deepgp'},
        py_modules = ['deepgp.__init__'],
        long_description=read('README.md'),
        install_requires=['numpy>=1.7', 'scipy>=0.12','GPy>=1.0'],
        include_dirs=[numpy.get_include()],
        classifiers=['License :: OSI Approved :: BSD License',
                     'Natural Language :: English',
                     'Operating System :: MacOS :: MacOS X',
                     'Operating System :: Microsoft :: Windows',
                     'Operating System :: POSIX :: Linux',
                     'Programming Language :: Python :: 2.7',
                     'Programming Language :: Python :: 3.3',
                     'Programming Language :: Python :: 3.4',
                     'Programming Language :: Python :: 3.5'
                     ]
        )
new_contents: #!/usr/bin/env python
  # -*- coding: utf-8 -*-
  
  import os
  from setuptools import setup
  import numpy
  
  # Version number
  version = '1.0'
  
  def read(fname):
      return open(os.path.join(os.path.dirname(__file__), fname)).read()
  
  setup(name = 'DGP',
        version = version,
        author = read('AUTHORS.txt'),
        author_email = "z.dai@sheffield.ac.uk",
        description = ("Deep Gaussian Process"),
        license = "BSD 3-clause",
        keywords = "deep learning",
        url = "",
        packages = ["deepgp",
                    "deepgp.inference",
                    "deepgp.layers",
                    "deepgp.models"],
        package_dir={'deepgp': 'deepgp'},
        py_modules = ['deepgp.__init__'],
        long_description=read('README.md'),
        install_requires=['numpy>=1.7', 'scipy>=0.12','GPy>=1.0'],
        include_dirs=[numpy.get_include()],
        classifiers=['License :: OSI Approved :: BSD License',
                     'Natural Language :: English',
                     'Operating System :: MacOS :: MacOS X',
                     'Operating System :: Microsoft :: Windows',
                     'Operating System :: POSIX :: Linux',
                     'Programming Language :: Python :: 2.7',
                     'Programming Language :: Python :: 3.3',
                     'Programming Language :: Python :: 3.4',
                     'Programming Language :: Python :: 3.5'
                     ]
        )
  
subject: Fix missing layers