old_contents: #!/usr/bin/env python
  """Script to auto-generate our API docs.
  """
  # stdlib imports
  import os
  
  # local imports
  from apigen import ApiDocWriter
  
  #*****************************************************************************
  if __name__ == '__main__':
      package = 'nipype'
      outdir = os.path.join('api','generated')
      docwriter = ApiDocWriter(package)
      # Packages that should not be included in generated API docs.
      docwriter.package_skip_patterns += ['\.externals$',
                                          '\.utils$',
                                          ]
      # Modules that should not be included in generated API docs.
      docwriter.module_skip_patterns += ['\.version$',
                                         '\.interfaces\.afni$',
                                         ]
      docwriter.write_api_docs(outdir)
      docwriter.write_index(outdir, 'gen', relative_to='api')
      print '%d files written' % len(docwriter.written_modules)
  
new_contents: #!/usr/bin/env python
  """Script to auto-generate our API docs.
  """
  # stdlib imports
  import os
  
  # local imports
  from apigen import ApiDocWriter
  
  #*****************************************************************************
  if __name__ == '__main__':
      package = 'nipype'
      outdir = os.path.join('api','generated')
      docwriter = ApiDocWriter(package)
      # Packages that should not be included in generated API docs.
      docwriter.package_skip_patterns += ['\.externals$',
                                          '\.utils$',
                                          ]
      # Modules that should not be included in generated API docs.
      docwriter.module_skip_patterns += ['\.version$',
                                         '\.interfaces\.afni$',
                                         '\.pipeline\.alloy$',
                                         '\.pipeline\.s3_node_wrapper$',
                                         ]
      docwriter.write_api_docs(outdir)
      docwriter.write_index(outdir, 'gen', relative_to='api')
      print '%d files written' % len(docwriter.written_modules)
  
subject: Remove alloy and s3 from generated docs, just for 0.1 release.