old_contents: #!/usr/bin/env python
  # -*- coding: utf-8 -*-
  
  
  from setuptools import setup, find_packages
  import os
  
  here = os.path.abspath(os.path.dirname(__file__))
  
  with open(os.path.join(here, 'README.rst')) as f:
      readme = f.read()
  
  
  # Extras requirements for optional dependencies
  extras = {
      'analysis': ['weblogo'],
      'all': ['weblogo']
  }
  
  # Version number must be in sync with the one in pbxplore/__init__.py
  setup(
      name='pbxplore',
      version='1.3.9',
  
      description="PBxplore is a suite of tools dedicated to Protein Block analysis.",
      long_description=readme,
  
      url='https://github.com/pierrepo/PBxplore',
  
      # Author details
      author='Pierre Poulain',
      author_email='pierre.poulain@cupnet.net',
  
      license='MIT',
  
      classifiers=[
          'Development Status :: 4 - Beta',
  
          # Indicate who your project is intended for
          'Intended Audience :: Science/Research',
          'Intended Audience :: Developers',
          'Topic :: Scientific/Engineering :: Bio-Informatics',
          'Topic :: Scientific/Engineering :: Chemistry',
          'Topic :: Scientific/Engineering :: Physics',
  
          'License :: OSI Approved :: MIT License',
  
          'Programming Language :: Python :: 2',
          'Programming Language :: Python :: 2.7',
          'Programming Language :: Python :: 3',
          'Programming Language :: Python :: 3.4',
          'Programming Language :: Python :: 3.5',
          'Programming Language :: Python :: 3.6',
      ],
  
      setup_requires=['pytest-runner'],
      install_requires=['numpy', 'MDAnalysis>=0.11', 'matplotlib'],
      tests_require=['pytest', 'pytest-raises', 'coverage'],
      # List additional groups of dependencies here
      # To install, use
      # $ pip install -e .[analysis]
      extras_require=extras,
  
      packages=find_packages(exclude=['test']),
      include_package_data=True,
      package_data={'pbxplore': ['demo/*']},
  
      entry_points={
          'console_scripts': [
              'PBassign = pbxplore.scripts.PBassign:pbassign_cli',
              'PBcount  = pbxplore.scripts.PBcount:pbcount_cli',
              'PBstat   = pbxplore.scripts.PBstat:pbstat_cli',
          ],
      },
  
  )
  
new_contents: #!/usr/bin/env python
  # -*- coding: utf-8 -*-
  
  
  from setuptools import setup, find_packages
  import os
  
  here = os.path.abspath(os.path.dirname(__file__))
  
  with open(os.path.join(here, 'README.rst')) as f:
      readme = f.read()
  
  
  # Extras requirements for optional dependencies
  extras = {
      'analysis': ['weblogo>=3.7'],
      'all': ['weblogo>=3.7']
  }
  
  # Version number must be in sync with the one in pbxplore/__init__.py
  setup(
      name='pbxplore',
      version='1.3.9',
  
      description="PBxplore is a suite of tools dedicated to Protein Block analysis.",
      long_description=readme,
  
      url='https://github.com/pierrepo/PBxplore',
  
      # Author details
      author='Pierre Poulain',
      author_email='pierre.poulain@cupnet.net',
  
      license='MIT',
  
      classifiers=[
          'Development Status :: 4 - Beta',
  
          # Indicate who your project is intended for
          'Intended Audience :: Science/Research',
          'Intended Audience :: Developers',
          'Topic :: Scientific/Engineering :: Bio-Informatics',
          'Topic :: Scientific/Engineering :: Chemistry',
          'Topic :: Scientific/Engineering :: Physics',
  
          'License :: OSI Approved :: MIT License',
  
          'Programming Language :: Python :: 2',
          'Programming Language :: Python :: 2.7',
          'Programming Language :: Python :: 3',
          'Programming Language :: Python :: 3.4',
          'Programming Language :: Python :: 3.5',
          'Programming Language :: Python :: 3.6',
      ],
  
      setup_requires=['pytest-runner'],
      install_requires=['numpy', 'MDAnalysis>=0.11', 'matplotlib'],
      tests_require=['pytest', 'pytest-raises', 'coverage'],
      # List additional groups of dependencies here
      # To install, use
      # $ pip install -e .[analysis]
      extras_require=extras,
  
      packages=find_packages(exclude=['test']),
      include_package_data=True,
      package_data={'pbxplore': ['demo/*']},
  
      entry_points={
          'console_scripts': [
              'PBassign = pbxplore.scripts.PBassign:pbassign_cli',
              'PBcount  = pbxplore.scripts.PBcount:pbcount_cli',
              'PBstat   = pbxplore.scripts.PBstat:pbstat_cli',
          ],
      },
  
  )
  
subject: Set the version of Weblogo