old_contents: from setuptools import setup
  from setuptools import find_packages
  
  
  def readme():
      with open('README.md', encoding='utf-8') as file:
          return file.read()
  
  setup(
      name='nalaf',
      version='0.1.2',
      description='Pipeline for NER of natural language mutation mentions',
      long_description=readme(),
      classifiers=[
          'Development Status :: 3 - Alpha',
          'Natural Language :: English',
          'Programming Language :: Python :: 3.4',
          'Topic :: Text Processing :: Linguistic'
      ],
      keywords='crf mutation natural language ner',
      url='https://github.com/Rostlab/nalaf',
      author='Aleksandar Bojchevski, Carsten Uhlig, Juan Miguel Cejuela',
      author_email='juanmi@jmcejuela.com',
      license='MIT',
      packages=find_packages(exclude=['tests']),
      install_requires=[
          'nltk',
          'beautifulsoup4',
          'requests',
          'python-crfsuite', #Note: it may cause problems on Windows machines
          'gensim' #Note: it may cause problems on different environments
      ],
      include_package_data=True,
      zip_safe=False,
      test_suite='nose.collector',
      setup_requires=['nose>=1.0'],
  )
  
new_contents: from setuptools import setup
  from setuptools import find_packages
  
  
  def readme():
      with open('README.md', encoding='utf-8') as file:
          return file.read()
  
  setup(
      name='nalaf',
      version='0.1.2',
      description='Pipeline for NER of natural language mutation mentions',
      long_description=readme(),
      classifiers=[
          'Development Status :: 3 - Alpha',
          'Natural Language :: English',
          'Programming Language :: Python :: 3.4',
          'Topic :: Text Processing :: Linguistic'
      ],
      keywords='crf mutation natural language ner',
      url='https://github.com/Rostlab/nalaf',
      author='Aleksandar Bojchevski, Carsten Uhlig, Juan Miguel Cejuela',
      author_email='juanmi@jmcejuela.com',
      license='MIT',
      packages=find_packages(exclude=['tests']),
      install_requires=[
          'nltk',
          'beautifulsoup4',
          'requests',
          'python-crfsuite', #Note: it may cause problems on Windows machines
           # 'gensim' #Note: it may cause problems on different environments (e.g. Travis CI)-- install it manually
      ],
      include_package_data=True,
      zip_safe=False,
      test_suite='nose.collector',
      setup_requires=['nose>=1.0'],
  )
  
subject: Comment out gensim dep