old_contents: # -----------------------------------------------------------------------------
  # Copyright (c) 2015, The Deblur Development Team.
  #
  # Distributed under the terms of the BSD 3-clause License.
  #
  # The full license is in the file LICENSE, distributed with this software.
  # -----------------------------------------------------------------------------
  
  from unittest import TestCase, main
  from StringIO import StringIO
  
  from skbio.parse.sequences import parse_fasta
  import numpy as np
  
  
  class workflowTests(TestCase):
  	def SetUp(self):
  		pass
  
  	def test_demultiplex_seqs(self):
  		pass
  
  	def test_split_seqs_on_sample_ids(self):
  		pass
  
  	def test_trim_seqs(self):
  		pass
  
  	def test_dereplicate_seqs(self):
  		pass
  
  	def test_remove_singletons_seqs(self):
  		pass
  
  	def test_remove_artifacts_seqs(self):
  		pass
  
  	def test_multiple_sequence_alignment(self):
  		pass
  
  	def remove_chimeras_denovo_from_seqs(self):
  		pass
  
  	def generate_biom_table(self):
  		pass
  
  	def assign_taxonomy(self):
  		pass
  
  
  if __name__ == '__main__':
      main()
new_contents: # -----------------------------------------------------------------------------
  # Copyright (c) 2015, The Deblur Development Team.
  #
  # Distributed under the terms of the BSD 3-clause License.
  #
  # The full license is in the file LICENSE, distributed with this software.
  # -----------------------------------------------------------------------------
  
  from unittest import TestCase, main
  from StringIO import StringIO
  
  from skbio.parse.sequences import parse_fasta
  import numpy as np
  
  
  class workflowTests(TestCase):
  	def SetUp(self):
  		pass
  
  	def test_demultiplex_seqs(self):
  		pass
  
  	def test_split_seqs_on_sample_ids(self):
  		pass
  
  	def test_trim_seqs(self):
  		pass
  
  	def test_dereplicate_seqs(self):
  		pass
  
  	def test_remove_singletons_seqs(self):
  		pass
  
  	def test_remove_artifacts_seqs(self):
  		pass
  
  	def test_multiple_sequence_alignment(self):
  		pass
  
  	def test_remove_chimeras_denovo_from_seqs(self):
  		pass
  
  	def test_generate_biom_table(self):
  		pass
  
  	def test_assign_taxonomy(self):
  		pass
  
  	def test_launch_workflow(self):
  		pass
  
  
  if __name__ == '__main__':
      main()
  
subject: edit test workflow