old_contents: """Test the CLI command that converts a gene panel with hgnc symbols to a new one with hgnc ids"""
  # -*- coding: utf-8 -*-
  
  from scout.commands import cli
  from scout.demo import panel_path
  
  
  def test_convert_missing_args(mock_app):
      """test the command with missing args"""
  
      runner = mock_app.test_cli_runner()
  
      # Test CLI without providing panel file
      result = runner.invoke(cli, ["convert"])
  
      # It should return error message
      assert "Missing argument" in result.output
  
  
  def test_convert_wrong_path(mock_app):
      """test the command with missing args"""
      runner = mock_app.test_cli_runner()
  
      # Provide a non-valid path to a panel file
      result = runner.invoke(cli, ["convert", "wrong/path/to/file"])
      assert result.exit_code != 0
      assert "Could not open file: wrong/path/to/file:" in result.output
      runner = mock_app.test_cli_runner()
  
  
  def test_convert_panel(mock_app):
      """test the command with missing args"""
      runner = mock_app.test_cli_runner()
  
      # Provide a valid path to a panel file
      result = runner.invoke(cli, ["convert", panel_path])
      # genes should be converted as expected
      assert result.exit_code == 0
      assert "2397\tCRYBB1\t\t\t\t\t\n9394\tPICK1" in result.output
  
new_contents: """Test the CLI command that converts a gene panel with hgnc symbols to a new one with hgnc ids"""
  # -*- coding: utf-8 -*-
  
  from scout.commands import cli
  from scout.demo import panel_path
  
  
  def test_convert_missing_args(mock_app):
      """test the command with missing args"""
  
      runner = mock_app.test_cli_runner()
  
      # Test CLI without providing panel file
      result = runner.invoke(cli, ["convert"])
  
      # It should return error message
      assert "Missing argument" in result.output
  
  
  def test_convert_wrong_path(mock_app):
      """test the command with missing args"""
      runner = mock_app.test_cli_runner()
  
      # Provide a non-valid path to a panel file
      result = runner.invoke(cli, ["convert", "wrong/path/to/file"])
      assert result.exit_code != 0
      assert "No such file or directory" in result.output
      runner = mock_app.test_cli_runner()
  
  
  def test_convert_panel(mock_app):
      """test the command with missing args"""
      runner = mock_app.test_cli_runner()
  
      # Provide a valid path to a panel file
      result = runner.invoke(cli, ["convert", panel_path])
      # genes should be converted as expected
      assert result.exit_code == 0
      assert "2397\tCRYBB1\t\t\t\t\t\n9394\tPICK1" in result.output
  
subject: fix other test