old_contents: import os
  from setuptools import setup
  
  
  setup(
      name="SIDR",
      version="0.0.1a1",
      author="Duncan Murdock",
      author_email="me@duncanmurdock.name",
      description=("Sequence Idenification using Decision tRees; a tool to classify DNA reads using machine learning models."),
      license="MIT",
      keywords="console tool bioinformatics",
      url="https://github.com/damurdock/SIDR",
      packages=['sidr', 'tests'],
      classifiers=[
          "Development Status :: 3 - Alpha",
          'Environment :: Console',
          "Topic :: Scientific/Engineering :: Bio-Informatics",
          "License :: OSI Approved :: MIT License",
          "Intended Audience :: Science/Research",
      ],
      install_requires=["NumPy", "SciPy", "pysam", "BioPython", "scikit-learn", "click", "pandas"],
      long_description=open("README.rst").read(),
      entry_points={
          'console_scripts': [
              'sidr = sidr.cli:cli',
          ],
      })
  
new_contents: import os
  from setuptools import setup
  
  
  setup(
      name="SIDR",
      version="0.0.1a2",
      author="Duncan Murdock",
      author_email="me@duncanmurdock.name",
      description=("Sequence Idenification using Decision tRees; a tool to classify DNA reads using machine learning models."),
      license="MIT",
      keywords="console tool bioinformatics",
      url="https://github.com/damurdock/SIDR",
      packages=['sidr', 'tests'],
      classifiers=[
          "Development Status :: 3 - Alpha",
          'Environment :: Console',
          "Topic :: Scientific/Engineering :: Bio-Informatics",
          "License :: OSI Approved :: MIT License",
          "Intended Audience :: Science/Research",
      ],
      install_requires=["NumPy", "SciPy", "pysam", "BioPython", "scikit-learn", "click", "pandas"],
      long_description=open("README.rst").read(),
      entry_points={
          'console_scripts': [
              'sidr = sidr.cli:cli',
          ],
      })
  
subject: increment version number