old_contents: from setuptools import setup
  
  DESCRIPTION = "Python based BAM alignment viewer"
  LONG_DESCRIPTION = DESCRIPTION
  NAME = "pybamview"
  AUTHOR = "Melissa Gymrek"
  AUTHOR_EMAIL = "mgymrek@mit.edu"
  MAINTAINER = "Melissa Gymrek"
  MAINTAINER_EMAIL = "mgymrek@mit.edu"
  DOWNLOAD_URL = 'http://github.com/mgymrek/pybamview'
  LICENSE = 'MIT'
  
  VERSION = '1.0.6'
  
  setup(name=NAME,
        version=VERSION,
        description=DESCRIPTION,
        long_description=LONG_DESCRIPTION,
        author=AUTHOR,
        author_email=AUTHOR_EMAIL,
        maintainer=MAINTAINER,
        maintainer_email=MAINTAINER_EMAIL,
        url=DOWNLOAD_URL,
        download_url=DOWNLOAD_URL,
        license=LICENSE,
        packages=['pybamview', 'pybamview.tests'],
        package_dir={'pybamview': 'pybamview'},
        package_data={
          'pybamview': ['browser/static/**/*', 'browser/templates/*.html',
                        'tests/data/*']
        },
        test_suite='pybamview.tests',
        entry_points={
          'console_scripts': [
            'pybamview = pybamview.cli:cli',
          ],
        },
        install_requires=['flask','pyfasta','pysam'],
        classifiers=['Development Status :: 4 - Beta',\
                         'Programming Language :: Python :: 2.6',\
                         'License :: OSI Approved :: MIT License',\
                         'Operating System :: OS Independent',\
                         'Intended Audience :: Science/Research',\
                         'Topic :: Scientific/Engineering :: Bio-Informatics',\
                         'Topic :: Scientific/Engineering :: Visualization']
       )
  
new_contents: from setuptools import setup, find_packages
  
  DESCRIPTION = "Python based BAM alignment viewer"
  LONG_DESCRIPTION = DESCRIPTION
  NAME = "pybamview"
  AUTHOR = "Melissa Gymrek"
  AUTHOR_EMAIL = "mgymrek@mit.edu"
  MAINTAINER = "Melissa Gymrek"
  MAINTAINER_EMAIL = "mgymrek@mit.edu"
  DOWNLOAD_URL = 'http://github.com/mgymrek/pybamview'
  LICENSE = 'MIT'
  
  VERSION = '1.0.6'
  
  setup(name=NAME,
        version=VERSION,
        description=DESCRIPTION,
        long_description=LONG_DESCRIPTION,
        author=AUTHOR,
        author_email=AUTHOR_EMAIL,
        maintainer=MAINTAINER,
        maintainer_email=MAINTAINER_EMAIL,
        url=DOWNLOAD_URL,
        download_url=DOWNLOAD_URL,
        license=LICENSE,
        packages=find_packages(exclude=('examples')),
        package_data={
          'pybamview': ['browser/static/css/*.css',
                        'browser/static/img/*',
                        'browser/static/javascript/*.js',
                        'browser/templates/*.html',
                        'tests/data/*']
        },
        test_suite='pybamview.tests',
        entry_points={
          'console_scripts': [
            'pybamview = pybamview.cli:cli',
          ],
        },
        install_requires=['flask','pyfasta','pysam'],
        classifiers=['Development Status :: 4 - Beta',\
                         'Programming Language :: Python :: 2.6',\
                         'License :: OSI Approved :: MIT License',\
                         'Operating System :: OS Independent',\
                         'Intended Audience :: Science/Research',\
                         'Topic :: Scientific/Engineering :: Bio-Informatics',\
                         'Topic :: Scientific/Engineering :: Visualization']
       )
  
subject: include assets from new module paths use find_packages function in setup.py