old_contents: """
  Construct time-stamped phylogenies from a precomputed trees
  Author: Pavel Sagulenko and Richard Neher
  """
  import os
  from setuptools import setup
  
  setup(
          name = "treetime",
          version = "0.2.4",
          author = "Pavel Sagulenko and Richard Neher",
          author_email = "richard.neher@unibas.ch",
          description = ("Maximum-likelihood phylodynamic inference"),
          license = "MIT",
          keywords = "Time-stamped phylogenies, evolution",
          url = "https://github.com/neherlab/treetime",
          packages=['treetime'],
          classifiers=[
              "Development Status :: 3 - Alpha",
              "Topic :: Science",
              "License :: OSI Approved :: MIT License",
              ],
          scripts=['bin/mugration.py',
          		'bin/homoplasy_scanner.py',
          		'bin/timetree_inference.py',
          		'bin/temporal_signal.py',
          		'bin/ancestral_reconstruction.py'
          ]
          )
  
new_contents: """
  Construct time-stamped phylogenies from a precomputed trees
  Author: Pavel Sagulenko and Richard Neher
  """
  import os
  from setuptools import setup
  
  setup(
          name = "treetime",
          version = "0.2.5",
          author = "Pavel Sagulenko and Richard Neher",
          author_email = "richard.neher@unibas.ch",
          description = ("Maximum-likelihood phylodynamic inference"),
          license = "MIT",
          keywords = "Time-stamped phylogenies, evolution",
          url = "https://github.com/neherlab/treetime",
          packages=['treetime'],
          classifiers=[
              "Development Status :: 3 - Alpha",
              "Topic :: Science",
              "License :: OSI Approved :: MIT License",
              ],
          scripts=['bin/mugration.py',
          		'bin/homoplasy_scanner.py',
          		'bin/timetree_inference.py',
          		'bin/temporal_signal.py',
          		'bin/ancestral_reconstruction.py'
          ]
          )
  
subject: update version in setup