new_contents: # Copyright 2019 Raytheon BBN Technologies
  #
  # Licensed under the Apache License, Version 2.0 (the "License");
  # you may not use this file except in compliance with the License.
  # You may obtain a copy of the License at
  #
  #    http://www.apache.org/licenses/LICENSE-2.0
  
  import numpy as np
  from auspex.log import logger
  from enum import Enum
  from .fits import AuspexFit
  
  class CR_cal_type(Enum):
      LENGTH = 1
      PHASE = 2
      AMP = 3
  
  
  class SineFit(AuspexFit):
  
  	def __init__(self, xpts, ypts, initial_phase, inital_freq):
  
  		self.initial_phase = initial_phase
  		self.initial_freq = initial_freq
  		super.__init__(xpts, ypts, make_plots=False)
  
  	def _model(self, x, *p):
  		return p[1]*np.sin(2*np.pi*p[0]*x + p[2]) + p[3]
  
  	def _initial_guess(self):
  		return [self.initial_freq, 1.0, self.initial_phase, 0.0]
  
  	def _fit_dict(self, p):
  		return {"f": p[0],
  				"A": p[1],
  				"phi": p[2],
  				"y0": p[3]}
  
  	def __str__(self):
  		return "A*sin(2*pi*f*x + phi) + y0"
  
  
  def fit_CR(xpoints, data, cal_type):
  	
  	data0 = data[:len(data)//2]
      data1 = data[len(data)//2:]
  	
  	if cal_type == CR_cal_type.LENGTH:
  		return fit_CR_length(xpoints, data0, data1)
  	elif cal_type == CR_cal_type.PHASE:
  		return fit_CR_phase(xpoints, data0, data1)
  	elif cal_type == CR_cal_type.AMP:
  		return fit_CR_amp(xpoints, data0, data1)
  
  def fit_CR_length(xpoints, data0, data1):
  	
  	xpoints = xpoints[0]
  	x_fine = np.linspace(min(xpoints), max(xpoints), 1001)
  
  	fit0 = SineFit(xpoints, data0, 1/(2.0*xpoints[-1]), np.pi/2.0) 
  	fit1 = SineFit(xpoints, data1, 1/(2.0*xpoints[-1]), np.pi/2.0)
  
  	#find the first zero crossing
  	delta = 2*(x_fine[1] - x_fine[0])
  	idx0 = int(1.0 / np.abs(fit0.fit_params["f"]) / delta)
  	idx1 = int(1.0 / np.abs(fit1.fit_params["f"]) / delta)
  
  	yfit0 = fit0.model(x_fine[:idx0])
  	yfit1 = fit1.model(x_fine[:idx1])
  	#average between the two qc states, rounded to 10 ns
  	xopt = round((x_fine[np.argmin(abs(yfit0))] + x_fine[np.argmin(abs(yfit1))])/2/10e-9)*10e-9
  	logger.info('CR length = {} ns'.format(xopt*1e9))
  
  	return xopt, fit0.fit_params, fit1.fit_params
  
  def fit_CR_phase(xpoints, data0, data1):
  
  	xpoints = xpoints[1]
  	x_fine = np.linspace(min(xpoints), max(xpoints), 1001)
  
  	fit0 = SineFit(xpoints, data0, 1.0/xpoints[-1], np.pi)
  	fit1 = SineFit(xpoints, data1, 1.0/xpoints[-1], np.pi)
  	#find the phase for maximum contrast
  	contrast = (fit0.model(x_fine) - fit1.model(x_fine))/2.0
  	logger.info(f"CR Contrast = {np.max(contrast)}")
  	xopt = x_fine[np.argmax(contrast)] - np.pi 
  
  	return xopt, fit0.fit_params, fit1.fit_params
  
  
   def fit_CR(xpoints, data0, data1):
      xpoints = xpoints[2]
      x_fine = np.linspace(min(xpoints), max(xpoints), 1001)
      popt0 = np.polyfit(xpoints, data0, 1) # tentatively linearize
      popt1 = np.polyfit(xpoints, data1, 1)
      #average between optimum amplitudes
      xopt = -(popt0[1]/popt0[0] + popt1[1]/popt1[0])/2
      logger.info('CR amplitude = {}'.format(xopt))
      return xopt, popt0, popt1
  
  
  
  
subject: Move CR fits to new file and clean up interface.