old_contents: import sys
  from setuptools import setup
  import versioneer
  
  if sys.version_info < (2, 7):
  	sys.stdout.write("At least Python 2.7 is required.\n")
  	sys.exit(1)
  
  with open('README.md') as f:
  	long_description = f.read()
  
  
  setup(
  	name = 'secapr',
  	version = versioneer.get_version(),
  	cmdclass = versioneer.get_cmdclass(),
  	author = 'Tobias Hofmann',
  	author_email = 'tobias.hofmann@bioenv.gu.se',
  	url = 'https://github.com/AntonelliLab/seqcap_processor',
  	description = 'Process sequence-capture fastq files into alignments for phylogenetic analyses',
  	long_description = long_description,
  	# license = 'BSD',
  	entry_points = {'console_scripts': ['secapr = secapr.__main__:main']},
  	packages = ['secapr'],
      install_requires = [
  	    # No dependencies listed here since we need to rely on conda anyway
      ],
  	classifiers = [
  		"Development Status :: 4 - Beta",
  		"Environment :: Console",
  		"Intended Audience :: Science/Research",
  		"License :: OSI Approved :: MIT License",
  		"Natural Language :: English",
  		"Programming Language :: Python :: 2.7",
  		"Topic :: Scientific/Engineering :: Bio-Informatics"
  	]
  )
  
new_contents: import sys
  from setuptools import setup
  import versioneer
  
  if sys.version_info < (2, 7):
  	sys.stdout.write("At least Python 2.7 is required.\n")
  	sys.exit(1)
  
  with open('README.md') as f:
  	long_description = f.read()
  
  
  setup(
  	name = 'secapr',
  	version = versioneer.get_version(),
  	cmdclass = versioneer.get_cmdclass(),
  	author = 'Tobias Hofmann',
  	author_email = 'tobias.hofmann@bioenv.gu.se',
  	url = 'https://github.com/AntonelliLab/seqcap_processor',
  	description = 'Process sequence-capture fastq files into alignments for phylogenetic analyses',
  	long_description = long_description,
  	# license = 'BSD',
  	entry_points = {'console_scripts': ['secapr = secapr.__main__:main']},
  	packages = ['secapr', 'secapr.phyluce'],
      install_requires = [
  	    # No dependencies listed here since we need to rely on conda anyway
      ],
  	classifiers = [
  		"Development Status :: 4 - Beta",
  		"Environment :: Console",
  		"Intended Audience :: Science/Research",
  		"License :: OSI Approved :: MIT License",
  		"Natural Language :: English",
  		"Programming Language :: Python :: 2.7",
  		"Topic :: Scientific/Engineering :: Bio-Informatics"
  	]
  )
  
subject: Add phyluce to distribution