old_contents: #!/usr/bin/env python
  ################################################################################
  #
  #   __init__.py
  #
  #
  #   Copyright (c) 10/9/2009 Leo Goodstadt
  #
  #   Permission is hereby granted, free of charge, to any person obtaining a copy
  #   of this software and associated documentation files (the "Software"), to deal
  #   in the Software without restriction, including without limitation the rights
  #   to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
  #   copies of the Software, and to permit persons to whom the Software is
  #   furnished to do so, subject to the following conditions:
  #
  #   The above copyright notice and this permission notice shall be included in
  #   all copies or substantial portions of the Software.
  #
  #   THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
  #   IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
  #   FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
  #   AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
  #   LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
  #   OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
  #   THE SOFTWARE.
  #################################################################################
  #from graph import *
  #from print_dependencies import *
  from .task import pipeline_printout, pipeline_printout_graph, pipeline_run, pipeline_get_task_names, register_cleanup, check_if_uptodate, active_if, split, transform, merge, collate, files, files_re, follows, parallel, stderr_logger, black_hole_logger, suffix, regex, inputs, add_inputs, touch_file, combine, mkdir, output_from, posttask, JobSignalledBreak, runtime_parameter, jobs_limit, formatter, subdivide, originate
  from .graph  import graph_colour_demo_printout
  from .file_name_parameters import needs_update_check_modify_time
  from . import cmdline
  from . import combinatorics
  #output_dependency_tree_in_dot_format, output_dependency_tree_key_in_dot_format
  from . import ruffus_version
  __version__=ruffus_version.__version
  
  
  
new_contents: #!/usr/bin/env python
  ################################################################################
  #
  #   __init__.py
  #
  #
  #   Copyright (c) 10/9/2009 Leo Goodstadt
  #
  #   Permission is hereby granted, free of charge, to any person obtaining a copy
  #   of this software and associated documentation files (the "Software"), to deal
  #   in the Software without restriction, including without limitation the rights
  #   to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
  #   copies of the Software, and to permit persons to whom the Software is
  #   furnished to do so, subject to the following conditions:
  #
  #   The above copyright notice and this permission notice shall be included in
  #   all copies or substantial portions of the Software.
  #
  #   THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
  #   IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
  #   FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
  #   AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
  #   LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
  #   OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
  #   THE SOFTWARE.
  #################################################################################
  #from graph import *
  #from print_dependencies import *
  from .task import pipeline_printout, pipeline_printout_graph, pipeline_run, pipeline_get_task_names, register_cleanup, check_if_uptodate, active_if, split, transform, merge, collate, files, files_re, follows, parallel, stderr_logger, black_hole_logger, suffix, regex, inputs, add_inputs, touch_file, combine, mkdir, output_from, posttask, JobSignalledBreak, runtime_parameter, jobs_limit, formatter, subdivide, originate, graphviz
  from .graph  import graph_colour_demo_printout
  from .file_name_parameters import needs_update_check_modify_time
  from . import cmdline
  from . import combinatorics
  #output_dependency_tree_in_dot_format, output_dependency_tree_key_in_dot_format
  from . import ruffus_version
  __version__=ruffus_version.__version
  
  
  
subject: add @graphviz wierd enough name not to clash??