old_contents: #!/usr/bin/env python
  # -*- coding: UTF-8 -*-
  
  from setuptools import setup
  
  import os.path
  
  scripts = ['bpln', 'cbpn', 'mcmcbpn', 'sabpn']
  scripts = [os.path.sep.join(('scripts', script)) for script in scripts]
  
  setup(
      name='BiologicalProcessNetworks',
      version='1.0a2',
      author='Christopher D. Lasher',
      author_email='chris.lasher@gmail.com',
      install_requires=[
          'bitarray',
          'ConflictsOptionParser',
          'ConvUtils<2.0',
          'fisher',
          'networkx>=1.0',
          'numpy',
          'scipy'
      ],
      packages=['bpn', 'bpn.mcmc', 'bpn.tests'],
      scripts=scripts,
      url='http://pypi.python.org/pypi/BiologicalProcessNetworks',
      license='MIT License',
      classifiers=[
          'Development Status :: 3 - Alpha',
          'Intended Audience :: Science/Research',
          'License :: OSI Approved :: MIT License',
          'Operating System :: OS Independent',
          'Programming Language :: Python :: 2.6',
          'Programming Language :: Python :: 2.7',
          'Topic :: Scientific/Engineering :: Bio-Informatics'
      ],
      description=("Identify significant connections between "
              "biological processes using gene interaction networks."),
      long_description=open('README.rst').read(),
  )
  
new_contents: #!/usr/bin/env python
  # -*- coding: UTF-8 -*-
  
  from setuptools import setup
  
  import os.path
  
  scripts = ['bpln', 'cbpn', 'mcmcbpn', 'sabpn']
  scripts = [os.path.sep.join(('scripts', script)) for script in scripts]
  
  setup(
      name='BiologicalProcessNetworks',
      version='1.0a3',
      author='Christopher D. Lasher',
      author_email='chris.lasher@gmail.com',
      install_requires=[
          'bitarray',
          'ConflictsOptionParser',
          'ConvUtils<2.0',
          'fisher',
          'networkx>=1.0',
          'numpy',
          'scipy'
      ],
      packages=['bpn', 'bpn.mcmc', 'bpn.tests'],
      scripts=scripts,
      url='http://pypi.python.org/pypi/BiologicalProcessNetworks',
      license='MIT License',
      classifiers=[
          'Development Status :: 3 - Alpha',
          'Intended Audience :: Science/Research',
          'License :: OSI Approved :: MIT License',
          'Operating System :: OS Independent',
          'Programming Language :: Python :: 2.6',
          'Programming Language :: Python :: 2.7',
          'Topic :: Scientific/Engineering :: Bio-Informatics'
      ],
      description=("Identify significant connections between "
              "biological processes using gene interaction networks."),
      long_description=open('README.rst').read(),
  )
  
subject: Bump version number.