old_contents: #!/usr/bin/env python
  # -*- coding: utf-8 -*-
  
  from setuptools import setup
  
  with open('README.rst') as readme_file:
      readme = readme_file.read()
  
  with open('HISTORY.rst') as history_file:
      history = history_file.read()
  
  requirements = [
      # TODO: put package requirements here
  ]
  
  
  test_requirements = [
      # TODO: put package test requirements here
  ]
  
  requirements = open('requirements.txt').readlines()
  setup(
      name='lcdblib',
      version='0.0.1',
      description="A set of helper functions for bioinformatics analysis with snakemake.",
      long_description=readme + '\n\n' + history,
      author="Ryan Dale",
      author_email='dalerr@niddk.nih.gov',
      url='https://github.com/lcdb/lcdblib',
      packages=[
          'lcdblib',
      ],
      package_dir={'lcdblib':
                   'lcdblib'},
      include_package_data=True,
      install_requires=requirements,
      license="MIT license",
      zip_safe=False,
      keywords='lcdblib',
      classifiers=[
          'Development Status :: 2 - Pre-Alpha',
          'Intended Audience :: Developers',
          'License :: OSI Approved :: MIT License',
          'Natural Language :: English',
          "Programming Language :: Python :: 2",
          'Programming Language :: Python :: 2.6',
          'Programming Language :: Python :: 2.7',
          'Programming Language :: Python :: 3',
          'Programming Language :: Python :: 3.3',
          'Programming Language :: Python :: 3.4',
          'Programming Language :: Python :: 3.5',
      ],
      test_suite='tests',
      tests_require=test_requirements
  )
  
new_contents: #!/usr/bin/env python
  # -*- coding: utf-8 -*-
  
  from setuptools import setup, find_packages
  
  with open('README.rst') as readme_file:
      readme = readme_file.read()
  
  with open('HISTORY.rst') as history_file:
      history = history_file.read()
  
  requirements = [
      # TODO: put package requirements here
  ]
  
  
  test_requirements = [
      # TODO: put package test requirements here
  ]
  
  requirements = open('requirements.txt').readlines()
  setup(
      name='lcdblib',
      version='0.0.1',
      description="A set of helper functions for bioinformatics analysis with snakemake.",
      long_description=readme + '\n\n' + history,
      author="Ryan Dale",
      author_email='dalerr@niddk.nih.gov',
      url='https://github.com/lcdb/lcdblib',
      packages=find_packages(),
      include_package_data=True,
      install_requires=requirements,
      license="MIT license",
      zip_safe=False,
      keywords='lcdblib',
      classifiers=[
          'Development Status :: 2 - Pre-Alpha',
          'Intended Audience :: Developers',
          'License :: OSI Approved :: MIT License',
          'Natural Language :: English',
          "Programming Language :: Python :: 2",
          'Programming Language :: Python :: 2.6',
          'Programming Language :: Python :: 2.7',
          'Programming Language :: Python :: 3',
          'Programming Language :: Python :: 3.3',
          'Programming Language :: Python :: 3.4',
          'Programming Language :: Python :: 3.5',
      ],
      test_suite='tests',
      tests_require=test_requirements
  )
  
subject: fix setup.py