old_contents: #!/usr/bin/python
  """icing setup script.
  
  Author: Federico Tomasi
  Copyright (c) 2016, Federico Tomasi.
  Licensed under the FreeBSD license (see LICENSE.txt).
  """
  
  from setuptools import setup, Extension
  
  # Package Version
  from icing import __version__ as version
  alignment_module = Extension('icing.align.align', sources=['icing/align/alignment.c'])
  setup(
      name='icing',
      version=version,
  
      description=('A package to clonal relate immunoglobulins'),
      long_description=open('README.md').read(),
      author='Federico Tomasi',
      author_email='federico.tomasi@dibris.unige.it',
      maintainer='Federico Tomasi',
      maintainer_email='federico.tomasi@dibris.unige.it',
      url='https://github.com/slipguru/icing',
      download_url='https://github.com/slipguru/icing/archive/'+version+'.tar.gz',
      keywords=['IG', 'immunoglobulins', 'clonotypes'],
      classifiers=[
          'Development Status :: 4 - Beta',
          'Environment :: Console',
          'Intended Audience :: Science/Research',
          'Intended Audience :: Developers',
          'Programming Language :: Python',
          'License :: OSI Approved :: BSD License',
          'Topic :: Software Development',
          'Topic :: Scientific/Engineering :: Bio-Informatics',
          'Operating System :: POSIX',
          'Operating System :: Unix',
          'Operating System :: MacOS'
      ],
      license='FreeBSD',
      packages=['icing', 'icing.core', 'icing.utils', 'icing.align',
                'icing.externals', 'icing.models', 'icing.parallel',
                'icing.plotting', 'icing.kernel', 'icing.validation'],
      requires=['numpy (>=1.10.1)',
                'scipy (>=0.16.1)',
                'sklearn (>=0.17)',
                'matplotlib (>=1.5.1)',
                'seaborn (>=0.7.0)'],
      scripts=['scripts/ici_run.py', 'scripts/ici_analysis.py'],
      ext_modules=[alignment_module]
  )
  
new_contents: #!/usr/bin/python
  """icing setup script.
  
  Author: Federico Tomasi
  Copyright (c) 2016, Federico Tomasi.
  Licensed under the FreeBSD license (see LICENSE.txt).
  """
  
  from setuptools import setup, Extension
  
  # Package Version
  from icing import __version__ as version
  # alignment_module = Extension('icing.align.align', sources=['icing/align/alignment.c'])
  setup(
      name='icing',
      version=version,
  
      description=('A package to clonal relate immunoglobulins'),
      long_description=open('README.md').read(),
      author='Federico Tomasi',
      author_email='federico.tomasi@dibris.unige.it',
      maintainer='Federico Tomasi',
      maintainer_email='federico.tomasi@dibris.unige.it',
      url='https://github.com/slipguru/icing',
      download_url='https://github.com/slipguru/icing/archive/'+version+'.tar.gz',
      keywords=['IG', 'immunoglobulins', 'clonotypes'],
      classifiers=[
          'Development Status :: 4 - Beta',
          'Environment :: Console',
          'Intended Audience :: Science/Research',
          'Intended Audience :: Developers',
          'Programming Language :: Python',
          'License :: OSI Approved :: BSD License',
          'Topic :: Software Development',
          'Topic :: Scientific/Engineering :: Bio-Informatics',
          'Operating System :: POSIX',
          'Operating System :: Unix',
          'Operating System :: MacOS'
      ],
      license='FreeBSD',
      packages=['icing', 'icing.core', 'icing.utils', 'icing.align',
                'icing.externals', 'icing.models', 'icing.parallel',
                'icing.plotting', 'icing.kernel', 'icing.validation'],
      requires=['numpy (>=1.10.1)',
                'scipy (>=0.16.1)',
                'sklearn (>=0.17)',
                'matplotlib (>=1.5.1)',
                'seaborn (>=0.7.0)'],
      scripts=['scripts/ici_run.py', 'scripts/ici_analysis.py'],
      # ext_modules=[alignment_module]
  )
  
subject: remove building of alignment so