old_contents: from setuptools import setup, find_packages
  
  with open('requirements.txt') as f:
      required = f.read().splitlines()
  
  setup(
          name='ssbio',
          version='0.9.4',
          author='Nathan Mih',
          author_email='nmih@ucsd.edu',
          license='MIT',
          url='http://github.com/SBRG/ssbio',
          download_url = 'https://github.com/SBRG/ssbio/archive/v0.9.4.tar.gz',
          description='Tools to enable structural systems biology',
          packages=find_packages(),
          package_dir={'ssbio': 'ssbio'},
          package_data={'ssbio': ['ssbio/etc/*']},
          # scripts=['ssbio/protein/structure/utils/cleanpdb.py',
          #          'ssbio/protein/sequence/properties/aggregation_propensity.py',
          #          'ssbio/protein/sequence/properties/thermostability.py',
          #          'ssbio/protein/structure/utils/mutatepdb.py',
          #          'ssbio/protein/structure/utils/tleap.py',
          #          'ssbio/protein/structure/properties/msms.py'],
          long_description=open('README.md').read(),
          install_requires=required
  )
  
new_contents: from setuptools import setup, find_packages
  
  with open('requirements.txt') as f:
      required = f.read().splitlines()
  
  setup(
          name='ssbio',
          version='0.9.5',
          author='Nathan Mih',
          author_email='nmih@ucsd.edu',
          license='MIT',
          url='http://github.com/SBRG/ssbio',
          download_url = 'https://github.com/SBRG/ssbio/archive/v0.9.5.tar.gz',
          description='Tools to enable structural systems biology',
          packages=find_packages(),
          package_dir={'ssbio': 'ssbio'},
          package_data={'ssbio': ['ssbio/etc/*']},
          # scripts=['ssbio/protein/structure/utils/cleanpdb.py',
          #          'ssbio/protein/sequence/properties/aggregation_propensity.py',
          #          'ssbio/protein/sequence/properties/thermostability.py',
          #          'ssbio/protein/structure/utils/mutatepdb.py',
          #          'ssbio/protein/structure/utils/tleap.py',
          #          'ssbio/protein/structure/properties/msms.py'],
          long_description=open('README.md').read(),
          install_requires=required
  )
  
subject: Increase version number