old_contents: #!/usr/bin/env python
  from setuptools import setup, find_packages
  
  setup(name="bipy",
        version="0.1.0",
        author="Rory Kirchner",
        author_email="rory.kirchner@gmail.com",
        description="Simple analysis pipelines",
        url="https://github.com/roryk/bipy",
        license="MIT",
        namespace_packages=["bipy"],
        packages=find_packages(),
        package_data={'bipy': ['toolbox/data/*']},
        scripts = ['examples/rnaseq/rnaseq_pipeline.py'],
        install_requires=[
            "numpy >= 1.6.2",
            "ipython >= 0.13.1",
            "bcbio-nextgen",
            "biopython >= 1.60",
            "cutadapt >= 1.2.1",
            "pandas >= 0.1.0",
            "HTSeq >= 0.5.3p9",
            "pysam == 0.7",
            "sh >= 1.0.8",
            "ipython-cluster-helper"])
  
new_contents: #!/usr/bin/env python
  from setuptools import setup, find_packages
  
  setup(name="bipy",
        version="0.1.0",
        author="Rory Kirchner",
        author_email="rory.kirchner@gmail.com",
        description="Simple analysis pipelines",
        url="https://github.com/roryk/bipy",
        license="MIT",
        namespace_packages=["bipy"],
        packages=find_packages(),
        package_data={'bipy': ['toolbox/data/*']},
        scripts = ['examples/rnaseq/rnaseq_pipeline.py'],
        dependency_links = ['http://github.com/humbughq/python-humbug/tarball/master#egg=python-humbug-0.1.6'],
        install_requires=[
            "numpy >= 1.6.2",
            "ipython >= 0.13.1",
            "bcbio-nextgen",
            "biopython >= 1.60",
            "cutadapt >= 1.2.1",
            "pandas >= 0.1.0",
            "HTSeq >= 0.5.3p9",
            "pysam == 0.7",
            "sh >= 1.0.8",
            "ipython-cluster-helper"])
  
subject: Remove humbug dependency.