old_contents: ##############################################################################
  # Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
  # Produced at the Lawrence Livermore National Laboratory.
  #
  # This file is part of Spack.
  # Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
  # LLNL-CODE-647188
  #
  # For details, see https://github.com/spack/spack
  # Please also see the NOTICE and LICENSE files for our notice and the LGPL.
  #
  # This program is free software; you can redistribute it and/or modify
  # it under the terms of the GNU Lesser General Public License (as
  # published by the Free Software Foundation) version 2.1, February 1999.
  #
  # This program is distributed in the hope that it will be useful, but
  # WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
  # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
  # conditions of the GNU Lesser General Public License for more details.
  #
  # You should have received a copy of the GNU Lesser General Public
  # License along with this program; if not, write to the Free Software
  # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
  ##############################################################################
  from spack import *
  from glob import glob
  
  
  class Motioncor2(Package):
      """MotionCor2 is a multi-GPU program that corrects beam-induced sample
      motion recorded on dose fractionated movie stacks. It implements a robust
      iterative alignment algorithm that delivers precise measurement and
      correction of both global and non-uniform local motions at
      single pixel level, suitable for both single-particle and
      tomographic images. MotionCor2 is sufficiently fast
      to keep up with automated data collection."""
  
      homepage = "http://msg.ucsf.edu/em/software"
      url      = "http://msg.ucsf.edu/MotionCor2/MotionCor2-1.0.2.tar.gz"
  
      version('1.0.2',        'f2f4c5b09170ab8480ca657f14cdba2b')
      version('1.0.1',        '73d94a80abdef9bf37bbc80fbbe76622')
      version('1.0.0',        '490f4df8daa9f5ddb9eec3962ba3ddf5')
  
      depends_on('cuda@8.0:8.99', type='run')
  
      def install(self, spec, prefix):
          mkdirp(prefix.bin)
          for files in glob("MotionCor2_*"):
              install(files, prefix.bin)
  
new_contents: ##############################################################################
  # Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
  # Produced at the Lawrence Livermore National Laboratory.
  #
  # This file is part of Spack.
  # Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
  # LLNL-CODE-647188
  #
  # For details, see https://github.com/spack/spack
  # Please also see the NOTICE and LICENSE files for our notice and the LGPL.
  #
  # This program is free software; you can redistribute it and/or modify
  # it under the terms of the GNU Lesser General Public License (as
  # published by the Free Software Foundation) version 2.1, February 1999.
  #
  # This program is distributed in the hope that it will be useful, but
  # WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
  # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
  # conditions of the GNU Lesser General Public License for more details.
  #
  # You should have received a copy of the GNU Lesser General Public
  # License along with this program; if not, write to the Free Software
  # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
  ##############################################################################
  from spack import *
  from glob import glob
  
  
  class Motioncor2(Package):
      """MotionCor2 is a multi-GPU program that corrects beam-induced sample
      motion recorded on dose fractionated movie stacks. It implements a robust
      iterative alignment algorithm that delivers precise measurement and
      correction of both global and non-uniform local motions at
      single pixel level, suitable for both single-particle and
      tomographic images. MotionCor2 is sufficiently fast
      to keep up with automated data collection."""
  
      homepage = "http://msg.ucsf.edu/em/software"
      url      = "http://msg.ucsf.edu/MotionCor2/MotionCor2-1.0.2.tar.gz"
  
      version('1.0.4',        '5fc0a35d9518b2df17104187dab63fc6')
      version('1.0.2',        'f2f4c5b09170ab8480ca657f14cdba2b')
      version('1.0.1',        '73d94a80abdef9bf37bbc80fbbe76622')
      version('1.0.0',        '490f4df8daa9f5ddb9eec3962ba3ddf5')
  
      depends_on('cuda@8.0:8.99', type='run')
      # libtiff.so.3 is required
      depends_on('libtiff@3.0:3.99', type='run')
  
      def install(self, spec, prefix):
          mkdirp(prefix.bin)
          for files in glob("MotionCor2_*"):
              install(files, prefix.bin)
  
subject: Add a new version and runtime dependency for MotionCor2. (#6817)