old_contents: from pathlib import Path
  import shutil
  
  import h5py
  from xrf_tomo import process_proj, make_single_hdf
  
  
  def ic_names(working_directory):
      # Find any HDF5 file in the working directory and grab the ic names
      files = [x for x in Path(working_directory).iterdir() if x.suffix == '.h5']
      if not files:
          raise Exception(f'No .h5 files found in "{working_directory}"')
  
      first_file = files[0]
  
      with h5py.File(first_file, 'r') as rf:
          names = rf["xrfmap"]["scalers"]["name"]
          names = [x.decode() for x in names]
          return names
  
  
  def process_projections(working_directory, parameters_file_name, log_file_name,
                          ic_name, skip_processed, output_directory):
      kwargs = {
          'wd': working_directory,
          'fn_param': parameters_file_name,
          'fn_log': log_file_name,
          'ic_name': ic_name,
          'skip_processed': skip_processed,
      }
      process_proj(**kwargs)
  
      kwargs = {
          'fn': 'tomo.h5',
          'fn_log': log_file_name,
          'wd_src': working_directory,
          'wd_dest': output_directory,
          'ic_name': ic_name,
      }
      make_single_hdf(**kwargs)
  
      # Copy the csv file into the output directory
      shutil.copyfile(Path(working_directory) / log_file_name,
                      Path(output_directory) / log_file_name)
  
new_contents: from pathlib import Path
  import shutil
  
  import h5py
  from xrf_tomo import process_proj, make_single_hdf
  
  # sys.stderr has been replaced by vtkPythonStdStreamCaptureHelper
  # As such, it does not have an "isatty()" function. Therefore, turn off
  # the tty check in the progress library.
  try:
      import progress
      progress.Infinite.check_tty = False
  except Exception:
      # Maybe a new version of pyxrf removed dependency on progress...
      # Or maybe progress refactored. Either way, let it go...
      pass
  
  
  def ic_names(working_directory):
      # Find any HDF5 file in the working directory and grab the ic names
      files = [x for x in Path(working_directory).iterdir() if x.suffix == '.h5']
      if not files:
          raise Exception(f'No .h5 files found in "{working_directory}"')
  
      first_file = files[0]
  
      with h5py.File(first_file, 'r') as rf:
          names = rf["xrfmap"]["scalers"]["name"]
          names = [x.decode() for x in names]
          return names
  
  
  def process_projections(working_directory, parameters_file_name, log_file_name,
                          ic_name, skip_processed, output_directory):
      kwargs = {
          'wd': working_directory,
          'fn_param': parameters_file_name,
          'fn_log': log_file_name,
          'ic_name': ic_name,
          'skip_processed': skip_processed,
      }
      process_proj(**kwargs)
  
      kwargs = {
          'fn': 'tomo.h5',
          'fn_log': log_file_name,
          'wd_src': working_directory,
          'wd_dest': output_directory,
          'ic_name': ic_name,
      }
      make_single_hdf(**kwargs)
  
      # Copy the csv file into the output directory
      shutil.copyfile(Path(working_directory) / log_file_name,
                      Path(output_directory) / log_file_name)
  
subject: Remove a tty check from the progress library