old_contents: try:
      from setuptools import setup
  except ImportError:
      from distutils.core import setup
  from distutils.extension import Extension
  
  setup(
      name='PEAKachu',
      version='0.1.0',
      packages=['peakachulib'],
      author='Thorsten Bischler',
      author_email='thorsten.bischler@uni-wuerzburg.de',
      description='Peak calling tool for CLIP-seq data',
      url='',
      install_requires=[
          "biopython >= 1.69",
          "matplotlib >= 2.0.2",
          "pandas >= 0.20.2",
          "pysam >= 0.11.2.2",
          "bcbio-gff >= 0.6.4",
          "statsmodels >= 0.8.0",
          "numexpr >= 2.6.2",
          "rpy2 >= 2.8.5"
      ],
      scripts=['bin/peakachu'],
      license='ISC License (ISCL)',
      long_description=open('README.rst').read(),
      classifiers=[
          'License :: OSI Approved :: ISC License (ISCL)',
          'Operating System :: POSIX',
          'Programming Language :: Python :: 3',
          'Topic :: Scientific/Engineering :: Bio-Informatics',
      ],
      ext_modules = [Extension("peakachulib.intersection", [ "peakachulib/intersection.pyx" ])]
  )
  
new_contents: try:
      from setuptools import setup
  except ImportError:
      from distutils.core import setup
  from distutils.extension import Extension
  
  setup(
      name='PEAKachu',
      version='0.1.0',
      packages=['peakachulib'],
      author='Thorsten Bischler',
      author_email='thorsten.bischler@uni-wuerzburg.de',
      description='Peak calling tool for CLIP-seq data',
      url='',
      install_requires=[
          "biopython >= 1.74",
          "matplotlib >= 3.1.1",
          "pandas >= 0.25.1",
          "pysam >= 0.15.3",
          "bcbio-gff >= 0.6.6",
          "statsmodels >= 0.10.1",
          "numexpr >= 2.7.0",
          "rpy2 >= 3.1.0"
      ],
      scripts=['bin/peakachu'],
      license='ISC License (ISCL)',
      long_description=open('README.rst').read(),
      classifiers=[
          'License :: OSI Approved :: ISC License (ISCL)',
          'Operating System :: POSIX',
          'Programming Language :: Python :: 3',
          'Topic :: Scientific/Engineering :: Bio-Informatics',
      ],
      ext_modules=[Extension("peakachulib.intersection",
                             ["peakachulib/intersection.pyx"])]
  )
  
subject: Update dependency versions