old_contents: from ez_setup import use_setuptools
  use_setuptools()
  
  from setuptools import setup, find_packages
  
  import clustercorr
  # Run 2to3 builder if we're on Python 3.x, from
  #   http://wiki.python.org/moin/PortingPythonToPy3k
  try:
      from distutils.command.build_py import build_py_2to3 as build_py
  except ImportError:
      # 2.x
      from distutils.command.build_py import build_py
  command_classes = {'build_py': build_py}
  
  setup(name='clustercorr',
        version=clustercorr.__version__,
        description="statistical models on clusters of correlated genomic data",
        packages=find_packages(),
        url="https://github.com/brentp/cluster-corr/",
        py_modules=['clustercorr'],
        long_description=open('README.md').read(),
        platforms='any',
        classifiers=[
          'Topic :: Scientific/Engineering :: Bio-Informatics',
          'Programming Language :: Python :: 2.7',
          'Programming Language :: Python :: 3',
          'Programming Language :: Python :: 3.2',
          'Programming Language :: Python :: 3.3',
            ],
        keywords='bioinformatics methylation correlation',
        author='brentp',
        author_email='bpederse@gmail.com',
        license='BSD 3-clause',
        include_package_data=True,
        #package_data = {"": ['*.R']}
        tests_require=['nose'],
        test_suite='nose.collector',
        zip_safe=False,
        install_requires=['numpy', 'pandas', 'pyper', 'aclust', 'toolshed'],
        #scripts=[],
        entry_points={
        },
        cmdclass=command_classes,
    )
  
new_contents: from ez_setup import use_setuptools
  use_setuptools()
  
  from setuptools import setup, find_packages
  
  import clustercorr
  # Run 2to3 builder if we're on Python 3.x, from
  #   http://wiki.python.org/moin/PortingPythonToPy3k
  try:
      from distutils.command.build_py import build_py_2to3 as build_py
  except ImportError:
      # 2.x
      from distutils.command.build_py import build_py
  command_classes = {'build_py': build_py}
  
  setup(name='clustercorr',
        version=clustercorr.__version__,
        description="statistical models on clusters of correlated genomic data",
        packages=find_packages(),
        url="https://github.com/brentp/cluster-corr/",
        py_modules=['clustercorr'],
        long_description=open('README.md').read(),
        platforms='any',
        classifiers=[
          'Topic :: Scientific/Engineering :: Bio-Informatics',
          'Programming Language :: Python :: 2.7',
          'Programming Language :: Python :: 3',
          'Programming Language :: Python :: 3.2',
          'Programming Language :: Python :: 3.3',
            ],
        keywords='bioinformatics methylation correlation',
        author='brentp',
        author_email='bpederse@gmail.com',
        license='BSD 3-clause',
        include_package_data=True,
        #package_data = {"": ['*.R']}
        tests_require=['nose'],
        test_suite='nose.collector',
        zip_safe=False,
        install_requires=['numpy', 'pandas', 'aclust', 'toolshed'],
        #scripts=[],
        entry_points={
        },
        cmdclass=command_classes,
    )
  
subject: remove pyper dep as it is included here