old_contents: #!/usr/bin/env python
  
  #-----------------------------------------------------------------------------
  # Copyright (c) 2013, The BiPy Developers.
  #
  # Distributed under the terms of the Modified BSD License.
  #
  # The full license is in the file COPYING.txt, distributed with this software.
  #-----------------------------------------------------------------------------
  
  __author__ = "Greg Caporaso"
  __copyright__ = "Copyright 2013, The BiPy project"
  __credits__ = ["Greg Caporaso", "Rob Knight", "Daniel McDonald",
                 "Jai Ram Rideout", "Antiono Gonzalez", "Yoshiki Vazquez Baeza",
                 "Emily TerAvest"]
  __license__ = "BSD"
  __version__ = '0.0.0-dev'
  __maintainer__ = "Greg Caporaso"
  __email__ = "gregcaporaso@gmail.com"
  
  from setuptools import setup
  import sys
  
  from distutils.command.build_py import build_py
  
  classes = """
      Development Status :: 1 - Planning
      License :: OSI Approved :: BSD License
      Topic :: Software Development :: Libraries
      Programming Language :: Python
      Programming Language :: Python :: 2.7
      Operating System :: Unix
      Operating System :: POSIX
      Operating System :: MacOS :: MacOS X
  """
  classifiers = [s.strip() for s in classes.split('\n') if s]
  
  long_description = """The BiPy Project"""
  
  setup(name='BiPy',
        cmdclass={'build_py':build_py},
        version=__version__,
        license=__license__,
        description='BiPy',
        long_description=long_description,
        author=__maintainer__,
        author_email=__email__,
        maintainer=__maintainer__,
        maintainer_email=__email__,
        url='https://github.com/gregcaporaso/bipy', # will soon be replaced
        packages=['bipy'],
        install_requires=['scipy'],
        extras_require={'test':["nose >= 0.10.1", "tox >= 1.6.1"],
                        'doc':"Sphinx >= 0.3"
                       },
        classifiers=classifiers
        )
  
new_contents: #!/usr/bin/env python
  
  #-----------------------------------------------------------------------------
  # Copyright (c) 2013, The BiPy Developers.
  #
  # Distributed under the terms of the Modified BSD License.
  #
  # The full license is in the file COPYING.txt, distributed with this software.
  #-----------------------------------------------------------------------------
  
  __author__ = "Greg Caporaso"
  __copyright__ = "Copyright 2013, The BiPy project"
  __credits__ = ["Greg Caporaso", "Rob Knight", "Daniel McDonald",
                 "Jai Ram Rideout", "Antiono Gonzalez", "Yoshiki Vazquez Baeza",
                 "Emily TerAvest"]
  __license__ = "BSD"
  __version__ = '0.0.0-dev'
  __maintainer__ = "Greg Caporaso"
  __email__ = "gregcaporaso@gmail.com"
  
  from setuptools import setup
  import sys
  
  from distutils.command.build_py import build_py
  
  classes = """
      Development Status :: 1 - Planning
      License :: OSI Approved :: BSD License
      Topic :: Software Development :: Libraries
      Programming Language :: Python
      Programming Language :: Python :: 2.7
      Operating System :: Unix
      Operating System :: POSIX
      Operating System :: MacOS :: MacOS X
  """
  classifiers = [s.strip() for s in classes.split('\n') if s]
  
  long_description = """The BiPy Project"""
  
  setup(name='BiPy',
        cmdclass={'build_py':build_py},
        version=__version__,
        license=__license__,
        description='BiPy',
        long_description=long_description,
        author=__maintainer__,
        author_email=__email__,
        maintainer=__maintainer__,
        maintainer_email=__email__,
        url='https://github.com/gregcaporaso/bipy', # will soon be replaced
        packages=['bipy'],
        install_requires=['numpy >= 1.5.1, <=1.7.1', 'matplotlib >= 1.1.0',
                          'scipy'],
        extras_require={'test':["nose >= 0.10.1", "tox >= 1.6.1"],
                        'doc':"Sphinx >= 0.3"
                       },
        classifiers=classifiers
        )
  
subject: Add numpy and matplotlib as dependencies