old_contents: #!/usr/bin/env python
  
  from setuptools import setup, find_packages
  from codecs import open
  from os import path
  from setuptools.extension import Extension
  from Cython.Build import cythonize
  import numpy
  import re
  import os
  
  here = path.abspath(path.dirname(__file__))
  
  # dirty but working
  __version__ = re.search(
      r'__version__\s*=\s*[\'"]([^\'"]*)[\'"]',  # It excludes inline comment too
      open('ot/__init__.py').read()).group(1)
  # The beautiful part is, I don't even need to check exceptions here.
  # If something messes up, let the build process fail noisy, BEFORE my release!
  
  ROOT = os.path.abspath(os.path.dirname(__file__))
  
  
  # convert markdown readme to rst if pypandoc installed
  try:
     import pypandoc
     README = pypandoc.convert('README.md', 'rst')
  except (IOError, ImportError):
     README = open(os.path.join(ROOT, 'README.md')).read()
  
  
  setup(name='POT',
        version=__version__,
        description='Python Optimal Transport Library',
        long_description=README,
        author=u'Remi Flamary, Nicolas Courty',
        author_email='remi.flamary@gmail.com, ncourty@gmail.com',
        url='https://github.com/rflamary/POT',
        packages=find_packages(),
        ext_modules = cythonize(Extension(
                  "ot.lp.emd_wrap",                                # the extension name
                   sources=["ot/lp/emd_wrap.pyx", "ot/lp/EMD_wrapper.cpp"], # the Cython source and
                                                          # additional C++ source files
                   language="c++",                        # generate and compile C++ code,
                   include_dirs=[numpy.get_include(),os.path.join(ROOT,'ot/lp')])),
        platforms=['linux','macosx','windows'],
        download_url='https://github.com/rflamary/POT/archive/{}.tar.gz'.format(__version__),
        license = 'MIT',
        scripts=[],
        data_files=[],
        requires=["numpy","scipy","cython","matplotlib"],
        install_requires=["numpy","scipy","cython","matplotlib"],
        classifiers=[
          'Development Status :: 4 - Beta',
          'Intended Audience :: Developers',
          'Environment :: Console',
          'Operating System :: OS Independent',
          'Operating System :: MacOS',
          'Operating System :: POSIX',
          'Programming Language :: Python',
          'Topic :: Utilities'
      ]
       )
  
new_contents: #!/usr/bin/env python
  
  from setuptools import setup, find_packages
  from codecs import open
  from os import path
  from setuptools.extension import Extension
  from Cython.Build import cythonize
  import numpy
  import re
  import os
  
  here = path.abspath(path.dirname(__file__))
  
  # dirty but working
  __version__ = re.search(
      r'__version__\s*=\s*[\'"]([^\'"]*)[\'"]',  # It excludes inline comment too
      open('ot/__init__.py').read()).group(1)
  # The beautiful part is, I don't even need to check exceptions here.
  # If something messes up, let the build process fail noisy, BEFORE my release!
  
  ROOT = os.path.abspath(os.path.dirname(__file__))
  
  
  # convert markdown readme to rst if pypandoc installed
  try:
     import pypandoc
     README = pypandoc.convert('README.md', 'rst')
  except (IOError, ImportError):
     README = open(os.path.join(ROOT, 'README.md'), encoding="utf-8").read()
  
  
  setup(name='POT',
        version=__version__,
        description='Python Optimal Transport Library',
        long_description=README,
        author=u'Remi Flamary, Nicolas Courty',
        author_email='remi.flamary@gmail.com, ncourty@gmail.com',
        url='https://github.com/rflamary/POT',
        packages=find_packages(),
        ext_modules = cythonize(Extension(
                  "ot.lp.emd_wrap",                                # the extension name
                   sources=["ot/lp/emd_wrap.pyx", "ot/lp/EMD_wrapper.cpp"], # the Cython source and
                                                          # additional C++ source files
                   language="c++",                        # generate and compile C++ code,
                   include_dirs=[numpy.get_include(),os.path.join(ROOT,'ot/lp')])),
        platforms=['linux','macosx','windows'],
        download_url='https://github.com/rflamary/POT/archive/{}.tar.gz'.format(__version__),
        license = 'MIT',
        scripts=[],
        data_files=[],
        requires=["numpy","scipy","cython","matplotlib"],
        install_requires=["numpy","scipy","cython","matplotlib"],
        classifiers=[
          'Development Status :: 4 - Beta',
          'Intended Audience :: Developers',
          'Environment :: Console',
          'Operating System :: OS Independent',
          'Operating System :: MacOS',
          'Operating System :: POSIX',
          'Programming Language :: Python',
          'Topic :: Utilities'
      ]
       )
  
subject: add encoding of readme.md in setup.py