new_contents: """
  Create a prophage.tbl file from a phispy directory that does not contain one.
  """
  
  import os
  import sys
  import argparse
  from evaluation import  make_prophage_tbl
  
  def make_new_prophage_tbl(phispydir):
      """
      Make a new prophage table
      :param phispydir: the directory to read the input and create the output
      :return: nothing
      """
  
      make_prophage_tbl(os.path.join(phispydir, 'prophage_tbl.txt'), os.path.join(phispydir, 'prophage.tbl'))
  
  if __name__ == '__main__':
      parser = argparse.ArgumentParser(description="create a prophage.tbl file for a PhiSpy directory")
      parser.add_argument('-d', help='phispy directory')
      parser.add_argument('-v', help='verbose output', action="store_true")
      args = parser.parse_args()
  
  
subject: Make a new prophage dir