old_contents: #!/usr/bin/env python
  from setuptools import setup, find_packages
  import sys
  import os
  import glob
  
  setup(name = "scilifelab",
        version = "0.2.1",
        author = "Science for Life Laboratory",
        author_email = "genomics_support@scilifelab.se",
        description = "Useful scripts for use at SciLifeLab",
        license = "MIT",
        scripts = glob.glob('scripts/*.py') + glob.glob('scripts/bcbb_helpers/*.py') + ['scripts/pm'],
        install_requires = [
          "bcbio-nextgen >= 0.2",
          "drmaa >= 0.5",
          "sphinx >= 1.1.3",
          "couchdb >= 0.8",
          "reportlab >= 2.5",
          "cement >= 2.0.2",
          "mock",
          "PIL",
          "pyPdf",
          "logbook >= 0.4",
          "numpy >= 1.6",
          "pandas >= 0.9",
          "biopython",
          ],
        test_suite = 'nose.collector',
        packages=find_packages(exclude=['tests']),
        package_data = {'scilifelab':[
              'data/grf/*',
              ]}
        )
  
  os.system("git rev-parse --short --verify HEAD > ~/.scilifelab_version")
  
new_contents: #!/usr/bin/env python
  from setuptools import setup, find_packages
  import sys
  import os
  import glob
  
  setup(name = "scilifelab",
        version = "0.2.1",
        author = "Science for Life Laboratory",
        author_email = "genomics_support@scilifelab.se",
        description = "Useful scripts for use at SciLifeLab",
        license = "MIT",
        scripts = glob.glob('scripts/*.py') + glob.glob('scripts/bcbb_helpers/*.py') + ['scripts/pm'],
        install_requires = [
          "bcbio-nextgen >= 0.2",
          "drmaa >= 0.5",
          "sphinx >= 1.1.3",
          "couchdb >= 0.8",
          "reportlab >= 2.5",
          "cement >= 2.0.2",
          "mock",
          "PIL",
          "pyPdf",
          "logbook >= 0.4",
          # pandas screws up installation; tries to look for local site
          # packages and not in virtualenv
          #"pandas >= 0.9",
          "biopython",
          ],
        test_suite = 'nose.collector',
        packages=find_packages(exclude=['tests']),
        package_data = {'scilifelab':[
              'data/grf/*',
              ]}
        )
  
  os.system("git rev-parse --short --verify HEAD > ~/.scilifelab_version")
  
subject: Comment out pandas in setup for now