old_contents: from evolib.lib.DNAmethods import sites2codons
  from evolib.lib.GeneralMethods import block_iter
  
  from evolib.NGSFormats import VariantCallFormat
  
  ###### ######
  
  myVCF = VariantCallFormat("test/pavy2012_A.vcf")
  
  for bp in myVCF.codingBySite():
      print bp.siteClassNarrow, bp.siteClassBroad
  
  """
  locus = 
  
  
  """
  
new_contents: ###### ######
  
  from evolib.NGSFormats import VariantCallFormat
  
  ###### ######
  
  myVCF = VariantCallFormat("test/pavy2012_A.vcf")
  
  for bp in myVCF.codingBySite():
      print bp.siteClassNarrow, bp.siteClassBroad
  
  
subject: tidy nonsyn