old_contents: # import numpy as np
  import os
  from setuptools import setup, Extension
  from setuptools import find_packages
  import numpy as np
  
  VERSION = '0.3.0'
  classifiers = [
      # How mature is this project? Common values are
      #   3 - Alpha
      #   4 - Beta
      #   5 - Production/Stable
      'Development Status :: 3 - Alpha',
  
      # Indicate who your project is intended for
      'Intended Audience :: End Users/Desktop',
      'Topic :: Scientific/Engineering :: Bio-Informatics',
  
      # Pick your license as you wish (should match "license" above)
       'License :: OSI Approved :: BSD License',
  
      # Specify the Python versions you support here. In particular, ensure
      # that you indicate whether you support Python 2, Python 3 or both.
      'Programming Language :: Python :: 3 :: Only',
      'Programming Language :: Python :: Implementation :: CPython'
  ]
  
  keywords = 'neuron 3d reconstruction image-stack'
  
  
  # Configuration for Lib tiff
  def configuration(parent_package='', top_path=None):
      from numpy.distutils.misc_util import Configuration
      config = Configuration(None, parent_package, top_path)
      return config
  
  # Parse Requirements
  BASEDIR = os.path.dirname(os.path.abspath(__file__))
  REQS = ['numpy>=1.8.0',
          'scipy>=0.17.0',
          'Cython>=0.25.1',
          'scikit-fmm==0.0.9',
          'scikit-image>=0.12.3',
          'matplotlib>=1.3.1',
          'nibabel>=2.1.0',
          'pyglet>=1.2.4',
          'tqdm>4.11.2',
          'libtiff==0.4.1']
  
  ext_modules = [
      Extension(
          'msfm',
          sources=[
              os.path.join('rivuletpy', 'msfm', 'msfmmodule.c'),
              os.path.join('rivuletpy', 'msfm', '_msfm.c'),
          ]),
  ]
  
  config = {
      'description':
      'Rivuletpy: a powerful tool to automatically trace single neurons from 3D light microscopic images.',
      'author': 'RivuletStuio',
      'url': 'https://github.com/RivuletStudio/rivuletpy',
      'author_email': 'lsqshr@gmail.com, zdhpeter1991@gmail.com',
      'version': VERSION,
      'install_requires': REQS,
      'packages': find_packages(),
      'license': 'BSD',
      'scripts': [
          os.path.join('apps','rtrace'),
          os.path.join('apps','compareswc'),
          os.path.join('apps','rswc'),
      ],
      'name': 'rivuletpy',
      'include_package_data': True,
      'ext_modules': ext_modules,
      'include_dirs': [np.get_include()],  # Add include path of numpy
      'setup_requires': 'numpy',
      'classifiers': classifiers,
  }
  
  setup(**config)
  
new_contents: # import numpy as np
  import os
  from setuptools import setup, Extension
  from setuptools import find_packages
  import numpy as np
  
  VERSION = '0.3.0'
  classifiers = [
      # How mature is this project? Common values are
      #   3 - Alpha
      #   4 - Beta
      #   5 - Production/Stable
      'Development Status :: 3 - Alpha',
  
      # Indicate who your project is intended for
      'Intended Audience :: End Users/Desktop',
      'Topic :: Scientific/Engineering :: Bio-Informatics',
  
      # Pick your license as you wish (should match "license" above)
       'License :: OSI Approved :: BSD License',
  
      # Specify the Python versions you support here. In particular, ensure
      # that you indicate whether you support Python 2, Python 3 or both.
      'Programming Language :: Python :: 3 :: Only',
      'Programming Language :: Python :: Implementation :: CPython'
  ]
  
  keywords = 'neuron 3d reconstruction image-stack'
  
  
  # Configuration for Lib tiff
  def configuration(parent_package='', top_path=None):
      from numpy.distutils.misc_util import Configuration
      config = Configuration(None, parent_package, top_path)
      return config
  
  # Parse Requirements
  BASEDIR = os.path.dirname(os.path.abspath(__file__))
  REQS = ['numpy>=1.8.0',
          'scipy>=0.17.0',
          'Cython>=0.25.1',
          'scikit-fmm==0.0.9',
          'scikit-image>=0.14.2',
          'matplotlib>=1.3.1',
          'nibabel>=2.1.0',
          'pyglet>=1.2.4',
          'tqdm>4.11.2',
          'libtiff==0.4.1']
  
  ext_modules = [
      Extension(
          'msfm',
          sources=[
              os.path.join('rivuletpy', 'msfm', 'msfmmodule.c'),
              os.path.join('rivuletpy', 'msfm', '_msfm.c'),
          ]),
  ]
  
  config = {
      'description':
      'Rivuletpy: a powerful tool to automatically trace single neurons from 3D light microscopic images.',
      'author': 'RivuletStuio',
      'url': 'https://github.com/RivuletStudio/rivuletpy',
      'author_email': 'lsqshr@gmail.com, zdhpeter1991@gmail.com',
      'version': VERSION,
      'install_requires': REQS,
      'packages': find_packages(),
      'license': 'BSD',
      'scripts': [
          os.path.join('apps','rtrace'),
          os.path.join('apps','compareswc'),
          os.path.join('apps','rswc'),
      ],
      'name': 'rivuletpy',
      'include_package_data': True,
      'ext_modules': ext_modules,
      'include_dirs': [np.get_include()],  # Add include path of numpy
      'setup_requires': 'numpy',
      'classifiers': classifiers,
  }
  
  setup(**config)
  
subject: Update the recommended version for scikit-image to >=0.14.2