old_contents: #!/usr/bin/env python
  import os
  import re
  import sys
  import biothings
  from string import Template
  from shutil import copytree
  
  def usage():
      return "Usage: python start-project.py < path to project directory > < object name > < OPTIONAL key=value pairs to override template variables >"
  
  def main(args):
      try:
          pdir = os.path.abspath(args[1])
          biothing_name = args[2]
          clargs = dict([arg.split('=', maxsplit=1) for arg in sys.argv[3:]])
      except:
          print("Valid project destination directory and object name must be included.")
          print(usage())
          sys.exit(1)
  
      cwd = os.getcwd()
      template_dir = os.path.join(os.path.split(biothings.__file__)[0], 'conf', 'biothings_templates')
  
      if not os.path.exists(template_dir):
          print("Could not find template directory.  Exiting.")
          sys.exit(1)
  
      # create settings dict
      settings_dict = {
          "src_package": 'my' + biothing_name.lower(),
          "settings_class": "My" + biothing_name.title() + "Settings",
          "annotation_endpoint": biothing_name.lower(),
          "query_endpoint": "query",
          "annotation_handler_name": biothing_name.title() + "Handler",
          "query_handler_name": "QueryHandler",
          "es_doctype": biothing_name.lower(),
          "base_url": "My" + biothing_name.title() + ".info"
      }
  
      # override any key value pairs from the command line
      settings_dict.update(clargs)
      
      # Make top level directory
      pdir = os.path.join(pdir, settings_dict["src_package"])
      os.mkdir(pdir)
  
      # Start to template files out
      os.chdir(template_dir)
  
      # Template files out
      for (index, (dirpath, dirnames, filenames)) in enumerate(list(os.walk('src'))):
          thisdir = os.path.join(pdir, dirpath)
          os.mkdir(thisdir)
          for fi in filenames:
              f = open(os.path.join(thisdir, fi.rstrip('-tpl')), 'w')
              g = open(os.path.join(os.path.abspath(dirpath), fi), 'r')
              f.write(Template(g.read()).substitute(settings_dict))
              f.close()
              g.close()
      os.chdir(cwd)
  
  if __name__ == '__main__':
      main(sys.argv)
  
new_contents: #!/usr/bin/env python
  import os
  import re
  import sys
  import biothings
  from string import Template
  from shutil import copytree
  
  def usage():
      return "Usage: biothings-admin.py < path to project directory > < object name > < OPTIONAL key=value pairs to override template variables >"
  
  def main(args):
      try:
          pdir = os.path.abspath(args[1])
          biothing_name = args[2]
          clargs = dict([arg.split('=', maxsplit=1) for arg in sys.argv[3:]])
      except:
          print("Valid project destination directory and object name must be included.")
          print(usage())
          sys.exit(1)
  
      cwd = os.getcwd()
      template_dir = os.path.join(os.path.split(biothings.__file__)[0], 'conf', 'biothings_templates')
  
      if not os.path.exists(template_dir):
          print("Could not find template directory.  Exiting.")
          sys.exit(1)
  
      # create settings dict
      settings_dict = {
          "src_package": 'my' + biothing_name.lower(),
          "settings_class": "My" + biothing_name.title() + "Settings",
          "annotation_endpoint": biothing_name.lower(),
          "query_endpoint": "query",
          "annotation_handler_name": biothing_name.title() + "Handler",
          "query_handler_name": "QueryHandler",
          "es_doctype": biothing_name.lower(),
          "base_url": "My" + biothing_name.title() + ".info"
      }
  
      # override any key value pairs from the command line
      settings_dict.update(clargs)
      
      # Make top level directory
      pdir = os.path.join(pdir, settings_dict["src_package"])
      os.mkdir(pdir)
  
      # Start to template files out
      os.chdir(template_dir)
  
      # Template files out
      for (index, (dirpath, dirnames, filenames)) in enumerate(list(os.walk('src'))):
          thisdir = os.path.join(pdir, dirpath)
          os.mkdir(thisdir)
          for fi in filenames:
              f = open(os.path.join(thisdir, fi.rstrip('-tpl')), 'w')
              g = open(os.path.join(os.path.abspath(dirpath), fi), 'r')
              f.write(Template(g.read()).substitute(settings_dict))
              f.close()
              g.close()
      os.chdir(cwd)
  
  if __name__ == '__main__':
      main(sys.argv)
  
subject: Update biothings-admin.py