old_contents: #!/usr/bin/env python
  
  try:
      from setuptools import setup
      have_setuptools = True
  except ImportError:
      from distutils.core import setup
      have_setuptools = False
  
  import glob
  
  with open('README') as f:
      long_description = f.read()
  
  with open('LICENSE.txt') as f:
      license = f.read()
  
  setup(name='scrimer',
        version='1.0',
        description='Primer designing pipeline',
        author='Libor Morkovsky',
        author_email='morkovsk@natur.cuni.cz',
        url='https://github.com/libor-m/scrimer',
        py_modules=[f.replace('.py', '') for f in glob.glob('scrimer/*.py')],
        scripts=glob.glob('scripts/*.py'),
        # http://stackoverflow.com/questions/6947988/when-to-use-pip-requirements-file-versus-install-requires-in-setup-py
        #install_requires=['PyVCF (>=0.6)', 'pybedtools (>=0.6)', 'pysam (>=0.7)'],
        install_requires=['PyVCF', 'pybedtools', 'pysam'],
        # requires=['PyVCF (>=0.6)', 'pybedtools (>=0.6)', 'pysam (>=0.7)'],
        data_files=[('demo', glob.glob('demo/*'))],
        long_description=long_description,
        # https://pypi.python.org/pypi?%3Aaction=list_classifiers
        classifiers=[
            'Development Status :: 4 - Beta',
            'Environment :: Console',
            'Intended Audience :: Science/Research',
            'License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)',
            'Natural Language :: English',
            'Operating System :: POSIX',
            'Operating System :: POSIX :: Linux',
            'Programming Language :: Python',
            'Programming Language :: Python :: 2.7',
            'Topic :: Scientific/Engineering :: Bio-Informatics',
        ],
        license=license,
        entry_points="""
        [vcf.filters]
        contrast-samples = scrimer.pyvcf_filters:DistinguishingVariants
        """,
       )
  
new_contents: #!/usr/bin/env python
  
  try:
      from setuptools import setup
      have_setuptools = True
  except ImportError:
      from distutils.core import setup
      have_setuptools = False
  
  import glob
  
  with open('README') as f:
      long_description = f.read()
  
  with open('LICENSE.txt') as f:
      license = f.read()
  
  setup(name='scrimer',
        version='1.1',
        description='Primer designing pipeline',
        author='Libor Morkovsky',
        author_email='morkovsk@natur.cuni.cz',
        url='https://github.com/libor-m/scrimer',
        py_modules=[f.replace('.py', '') for f in glob.glob('scrimer/*.py')],
        scripts=glob.glob('scripts/*.py'),
        # http://stackoverflow.com/questions/6947988/when-to-use-pip-requirements-file-versus-install-requires-in-setup-py
        #install_requires=['PyVCF (>=0.6)', 'pybedtools (>=0.6)', 'pysam (>=0.7)'],
        install_requires=['PyVCF', 'pybedtools', 'pysam'],
        # requires=['PyVCF (>=0.6)', 'pybedtools (>=0.6)', 'pysam (>=0.7)'],
        data_files=[('demo', glob.glob('demo/*'))],
        long_description=long_description,
        # https://pypi.python.org/pypi?%3Aaction=list_classifiers
        classifiers=[
            'Development Status :: 4 - Beta',
            'Environment :: Console',
            'Intended Audience :: Science/Research',
            'License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)',
            'Natural Language :: English',
            'Operating System :: POSIX',
            'Operating System :: POSIX :: Linux',
            'Programming Language :: Python',
            'Programming Language :: Python :: 2.7',
            'Topic :: Scientific/Engineering :: Bio-Informatics',
        ],
        license=license,
        entry_points="""
        [vcf.filters]
        contrast-samples = scrimer.pyvcf_filters:DistinguishingVariants
        """,
       )
  
subject: bump version to 1.1