old_contents: #!/usr/bin/env python
  
  #-----------------------------------------------------------------------------
  # Copyright (c) 2013, The BiPy Development Team.
  #
  # Distributed under the terms of the Modified BSD License.
  #
  # The full license is in the file COPYING.txt, distributed with this software.
  #-----------------------------------------------------------------------------
  
  
  __author__ = "The BiPy Development Team"
  __copyright__ = "Copyright 2013, The BiPy Project"
  __credits__ = ["Rob Knight", 
                 "Greg Caporaso", 
                 "Gavin Huttley", 
                 "Daniel McDonald",
                 "Jai Ram Rideout"] 
  __license__ = "BSD"
  __version__ = "0.1.0-dev"
  __maintainer__ = "Greg Caporaso"
  __email__ = "gregcaporaso@gmail.com"
  
  # import most commonly used objects and functions so they can
  # be imported directly from pyqi (e.g., from pyqi import make_option)
  from pyqi.option_parsing import (
   make_option, 
   parse_command_line_parameters)
  from pyqi.test import (run_script_usage_tests)
  from pyqi.util import (pyqi_system_call)
  
  __all__ = ['option_parsing','test','util']
  
new_contents: #!/usr/bin/env python
  
  #-----------------------------------------------------------------------------
  # Copyright (c) 2013, The BiPy Development Team.
  #
  # Distributed under the terms of the Modified BSD License.
  #
  # The full license is in the file COPYING.txt, distributed with this software.
  #-----------------------------------------------------------------------------
  
  __author__ = "Greg Caporaso"
  __copyright__ = "Copyright 2013, The pyqi project"
  __credits__ = ["Greg Caporaso", "Daniel McDonald", "Jai Ram Rideout",
                 "Doug Wendel"]
  __license__ = "BSD"
  __version__ = "0.1.0-dev"
  __maintainer__ = "Greg Caporaso"
  __email__ = "gregcaporaso@gmail.com"
  
subject: Update top-level __init__.py