old_contents: #!/usr/bin/env python
  
  # based on:
  # https://github.com/marcindulak/python-mycli/blob/master/setup.py#L34
  
  import os
  from setuptools import setup
  #from distutils.core import setup
  
  name = "dyfunconn"
  rootdir = os.path.abspath(os.path.dirname(__file__))
  
  packages = []
  for dirname, dirnames, filenames in os.walk(name):
      if '__init__.py' in filenames:
          packages.append(dirname.replace('/', '.'))
  
  data_files = []
  for extra_dirs in ("docs", "examples", "tests"):
      for dirname, dirnames, filenames in os.walk(extra_dirs):
          fileslist = []
          for filename in filenames:
              fullname = os.path.join(dirname, filename)
              fileslist.append(fullname)
          data_files.append(('share/' + name + '/' + dirname, fileslist))
  
  setup(name='dyfunconn',
        version='v1.0.0-beta.3',
        description='A dynamic functional connectivity module in Python',
        author='Avraam Marimpis, Stavros Dimitriadis',
        author_email='Avraam.Marimpis@gmail.com, STIDimitriadis@gmail.com',
        license='BSD',
        keywords='eeg fMRI meg connectivity graphs neuroimage brain',
        url = 'https://github.com/makism/dyfunconn',
        python_requires='~=3.6',
        packages=packages,
        install_requires=['numpy', 'scipy', 'networkx', 'matplotlib', 'statsmodels', 'scikit-learn', 'bctpy'],
        package_dir={'dyfunconn': 'dyfunconn'},
        data_files=data_files,
        classifiers=['Development Status :: 4 - Beta',
                     'Programming Language :: Python :: 3.6',
                     'Intended Audience :: Science/Research',
                     'Intended Audience :: Developers',
                     'License :: OSI Approved',
                     'Topic :: Software Development',
                     'Topic :: Scientific/Engineering',
                     'Operating System :: Microsoft :: Windows',
                     'Operating System :: POSIX',
                     'Operating System :: Unix',
                     'Operating System :: MacOS'
                     ],
        )
  
new_contents: #!/usr/bin/env python
  
  # based on:
  # https://github.com/marcindulak/python-mycli/blob/master/setup.py#L34
  
  import os
  from setuptools import setup
  #from distutils.core import setup
  
  name = "dyfunconn"
  rootdir = os.path.abspath(os.path.dirname(__file__))
  
  packages = []
  for dirname, dirnames, filenames in os.walk(name):
      if '__init__.py' in filenames:
          packages.append(dirname.replace('/', '.'))
  
  data_files = []
  for extra_dirs in ("docs", "examples", "tests"):
      for dirname, dirnames, filenames in os.walk(extra_dirs):
          fileslist = []
          for filename in filenames:
              fullname = os.path.join(dirname, filename)
              fileslist.append(fullname)
          data_files.append(('share/' + name + '/' + dirname, fileslist))
  
  setup(name='dyfunconn',
        version='v1.0.0-beta.4',
        description='A dynamic functional connectivity module in Python',
        author='Avraam Marimpis, Stavros Dimitriadis',
        author_email='Avraam.Marimpis@gmail.com, STIDimitriadis@gmail.com',
        license='BSD',
        keywords='eeg fMRI meg connectivity graphs neuroimage brain',
        url = 'https://github.com/makism/dyfunconn',
        python_requires='~=3.6',
        packages=packages,
        install_requires=['numpy', 'scipy', 'networkx', 'matplotlib', 'statsmodels', 'scikit-learn', 'bctpy'],
        package_dir={'dyfunconn': 'dyfunconn'},
        data_files=data_files,
        classifiers=['Development Status :: 4 - Beta',
                     'Programming Language :: Python :: 3.6',
                     'Intended Audience :: Science/Research',
                     'Intended Audience :: Developers',
                     'License :: OSI Approved',
                     'Topic :: Software Development',
                     'Topic :: Scientific/Engineering',
                     'Operating System :: Microsoft :: Windows',
                     'Operating System :: POSIX',
                     'Operating System :: Unix',
                     'Operating System :: MacOS'
                     ],
        )
  
subject: Update version release number.