old_contents: #!/usr/bin/env python
  
  """Bioinformatics utilities for molecular sequence analysis."""
  
  from glob import glob
  from os.path import dirname, join
  
  DIR = (dirname(__file__) or '.')
  
  setup_args = dict(
      name='biofrills',
      version='0.1.0',
      description=__doc__,
      author='Eric Talevich',
      author_email='eric.talevich@gmail.com',
      url='http://github.com/etal/biofrills',
      classifiers=[
          'Development Status :: 3 - Alpha',
          'Intended Audience :: Developers',
          'Intended Audience :: Science/Research',
          'License :: OSI Approved :: BSD License',
          'Programming Language :: Python :: 2.7',
          'Programming Language :: Python :: Implementation :: PyPy',
          'Topic :: Scientific/Engineering :: Bio-Informatics',
      ],
      packages=['biofrills'],
      #scripts=glob(join(DIR, 'scripts', '*'))
  )
  
  try:
      from setuptools import setup
      from setuptools.extension import Extension
      # Dependencies for easy_install:
      setup_args.update(
          install_requires=[
              'biopython >= 1.58',
              'Cython >= 0.11',
          ])
  except ImportError:
      from distutils.core import setup
      from distutils.extension import Extension
  
  try:
      from Cython.Distutils import build_ext
      setup_args.update(
          cmdclass={'build_ext': build_ext},
          ext_modules=[
              Extension('biofrills.cpairutils',
                        [join(DIR, 'biofrills', 'cpairutils.pyx')]),
          ],
      )
  except ImportError:
      pass
  
  setup(**setup_args)
  
  
new_contents: #!/usr/bin/env python
  
  """Bioinformatics utilities for molecular sequence analysis."""
  
  from glob import glob
  from os.path import dirname, join
  
  DIR = (dirname(__file__) or '.')
  
  setup_args = dict(
      name='biofrills',
      version='0.1.0',
      description=__doc__,
      author='Eric Talevich',
      author_email='eric.talevich@gmail.com',
      url='http://github.com/etal/biofrills',
      classifiers=[
          'Development Status :: 3 - Alpha',
          'Intended Audience :: Developers',
          'Intended Audience :: Science/Research',
          'License :: OSI Approved :: BSD License',
          'Programming Language :: Python :: 2.7',
          'Programming Language :: Python :: Implementation :: PyPy',
          'Topic :: Scientific/Engineering :: Bio-Informatics',
      ],
      packages=['biofrills', 'biofrills.stats'],
      #scripts=glob(join(DIR, 'scripts', '*'))
  )
  
  try:
      from setuptools import setup
      from setuptools.extension import Extension
      # Dependencies for easy_install:
      setup_args.update(
          install_requires=[
              'biopython >= 1.58',
              'Cython >= 0.11',
          ])
  except ImportError:
      from distutils.core import setup
      from distutils.extension import Extension
  
  try:
      from Cython.Distutils import build_ext
      setup_args.update(
          cmdclass={'build_ext': build_ext},
          ext_modules=[
              Extension('biofrills.cpairutils',
                        [join(DIR, 'biofrills', 'cpairutils.pyx')]),
          ],
      )
  except ImportError:
      pass
  
  setup(**setup_args)
  
  
subject: include biofrills.stats sub-package