old_contents: from calculation import Calculation, Bootstrapping, PathSampling
  
  from ensemble import Ensemble, EnsembleCombination, EnsembleFactory, \
      EntersXEnsemble, EmptyEnsemble, ExitsXEnsemble, FullEnsemble, \
      PartInEnsemble, AllInEnsemble, AllOutEnsemble, WrappedEnsemble, \
      BackwardPrependedTrajectoryEnsemble, ForwardAppendedTrajectoryEnsemble, \
      PartOutEnsemble, LengthEnsemble, LoadedEnsemble, NegatedEnsemble, \
      ReversedTrajectoryEnsemble, SequentialEnsemble, VolumeEnsemble, \
      SequentialEnsemble, IntersectionEnsemble, UnionEnsemble, SymmetricDifferenceEnsemble, RelativeComplementEnsemble, \
      SingleFrameEnsemble, MinusInterfaceEnsemble
  
  from snapshot import Snapshot, Configuration, Momentum
  
  from trajectory import Trajectory
  from sample import Sample, SampleSet
  
  from orderparameter import OP_Function, OP_MD_Function, OP_Featurizer, \
      OP_RMSD_To_Lambda, OP_Volume, OrderParameter
  
  from pathmover import (
      BackwardShootMover, MinusMover, RandomChoiceMover, MoveDetails,
      ForwardShootMover, PathMover, PathMoverFactory, PathReversalMover, 
      ReplicaExchangeMover, ConditionalSequentialMover, EnsembleHopMover,
      PartialAcceptanceSequentialMover, ReplicaIDChangeMover, SequentialMover,
      ConditionalMover, FilterByReplica, RestrictToLastSampleMover,
      CollapseMove, CalculationMover, PathReversalSet,
      NeighborEnsembleReplicaExchange
      #, BootstrapPromotionMove
  )
  
  from shooting import ShootingPoint, ShootingPointSelector, UniformSelector, \
      GaussianBiasSelector, FirstFrameSelector, FinalFrameSelector
  
  from dynamics_engine import DynamicsEngine
  
  from openmm_engine import OpenMMEngine
  
  from volume import Volume, VolumeCombination, VolumeFactory, VoronoiVolume, \
      EmptyVolume, FullVolume, LambdaVolume, LambdaVolumePeriodic, IntersectionVolume, \
      UnionVolume, SymmetricDifferenceVolume, RelativeComplementVolume
  
  from todict import ObjectJSON, ops_object, class_list
  
  from tools import empty_snapshot_from_openmm_topology, snapshot_from_pdb, \
      to_openmm_topology, trajectory_from_mdtraj, units_from_snapshot
  
  from topology import ToyTopology, MDTrajTopology, Topology
  
  from toy_dynamics.toy_pes import Gaussian, HarmonicOscillator, LinearSlope, \
      OuterWalls, Toy_PES, Toy_PES_Add, Toy_PES_Sub
  
  from toy_dynamics.toy_engine import ToyEngine
  
  from toy_dynamics.toy_integrators import LangevinBAOABIntegrator, \
      LeapfrogVerletIntegrator
  
  from analysis.tis_analysis import TISTransition, RETISTransition, Transition, \
      TPSTransition
  
  from movepath import (EmptyMovePath, ConditionalSequentialMovePath,
                        MovePath, PartialAcceptanceSequentialMovePath,
                        RandomChoiceMovePath, SampleMovePath,
                        SequentialMovePath,  KeepLastSampleMovePath,
                        CollapsedMovePath, FilterSamplesMovePath,
                        CalculationMovePath
                       )
  
new_contents: from calculation import Calculation, Bootstrapping, PathSampling
  
  from ensemble import Ensemble, EnsembleCombination, EnsembleFactory, \
      EntersXEnsemble, EmptyEnsemble, ExitsXEnsemble, FullEnsemble, \
      PartInEnsemble, AllInEnsemble, AllOutEnsemble, WrappedEnsemble, \
      BackwardPrependedTrajectoryEnsemble, ForwardAppendedTrajectoryEnsemble, \
      PartOutEnsemble, LengthEnsemble, NegatedEnsemble, \
      ReversedTrajectoryEnsemble, SequentialEnsemble, VolumeEnsemble, \
      SequentialEnsemble, IntersectionEnsemble, UnionEnsemble, \
      SymmetricDifferenceEnsemble, RelativeComplementEnsemble, \
      SingleFrameEnsemble, MinusInterfaceEnsemble
  
  from snapshot import Snapshot, Configuration, Momentum
  
  from trajectory import Trajectory
  from sample import Sample, SampleSet
  
  from orderparameter import OP_Function, OP_MD_Function, OP_Featurizer, \
      OP_RMSD_To_Lambda, OP_Volume, OrderParameter
  
  from pathmover import (
      BackwardShootMover, MinusMover, RandomChoiceMover, MoveDetails,
      ForwardShootMover, PathMover, PathMoverFactory, PathReversalMover, 
      ReplicaExchangeMover, ConditionalSequentialMover, EnsembleHopMover,
      PartialAcceptanceSequentialMover, ReplicaIDChangeMover, SequentialMover,
      ConditionalMover, FilterByReplica, RestrictToLastSampleMover,
      CollapseMove, CalculationMover, PathReversalSet,
      NeighborEnsembleReplicaExchange
      #, BootstrapPromotionMove
  )
  
  from shooting import ShootingPoint, ShootingPointSelector, UniformSelector, \
      GaussianBiasSelector, FirstFrameSelector, FinalFrameSelector
  
  from dynamics_engine import DynamicsEngine
  
  from openmm_engine import OpenMMEngine
  
  from volume import Volume, VolumeCombination, VolumeFactory, VoronoiVolume, \
      EmptyVolume, FullVolume, LambdaVolume, LambdaVolumePeriodic, \
      IntersectionVolume, \
      UnionVolume, SymmetricDifferenceVolume, RelativeComplementVolume
  
  from todict import ObjectJSON, ops_object, class_list
  
  from tools import empty_snapshot_from_openmm_topology, snapshot_from_pdb, \
      to_openmm_topology, trajectory_from_mdtraj, units_from_snapshot
  
  from topology import ToyTopology, MDTrajTopology, Topology
  
  from toy_dynamics.toy_pes import Gaussian, HarmonicOscillator, LinearSlope, \
      OuterWalls, Toy_PES, Toy_PES_Add, Toy_PES_Sub
  
  from toy_dynamics.toy_engine import ToyEngine
  
  from toy_dynamics.toy_integrators import LangevinBAOABIntegrator, \
      LeapfrogVerletIntegrator
  
  from analysis.tis_analysis import TISTransition, RETISTransition, Transition, \
      TPSTransition
  
  from movepath import (EmptyMovePath, ConditionalSequentialMovePath,
                        MovePath, PartialAcceptanceSequentialMovePath,
                        RandomChoiceMovePath, SampleMovePath,
                        SequentialMovePath,  KeepLastSampleMovePath,
                        CollapsedMovePath, FilterSamplesMovePath,
                        CalculationMovePath
                       )
  
subject: fix init.py