old_contents: #! /usr/bin/python
  # PROPKA 3.1
  #
  #
  # setuptools installation of  PROPKA 3.1
  
  from setuptools import setup, find_packages
  
  VERSION = "3.1.1"
  
  setup(name="PROPKA",
        version=VERSION,
        description="Heuristic pKa calculations with ligands",
        long_description="""
  PROPKA predicts the pKa values of ionizable groups in proteins (version 3.0) and
  protein-ligand complexes (version 3.1) based on the 3D structure.
  
  For proteins without ligands both version should produce the same result.
  
  The method is described in the following papers, which you should cite
  in publications:
  
  * Sondergaard, Chresten R., Mats HM Olsson, Michal Rostkowski, and Jan
    H. Jensen. "Improved Treatment of Ligands and Coupling Effects in
    Empirical Calculation and Rationalization of pKa Values." Journal of
    Chemical Theory and Computation 7, no. 7 (2011): 2284-2295.
  
  * Olsson, Mats HM, Chresten R. Sondergaard, Michal Rostkowski, and Jan
    H. Jensen. "PROPKA3: consistent treatment of internal and surface
    residues in empirical pKa predictions." Journal of Chemical Theory
    and Computation 7, no. 2 (2011): 525-537.
  
  See http://propka.org/ for the PROPKA web server.
  """,
        author="Jan H. Jensen",
        author_email="jhjensen@chem.ku.dk",
        license="LGPL v2.1",
        url="http://propka.org",
        keywords="science",
        classifiers=[
            'Development Status :: 6 - Mature',
            'Environment :: Console',
            'Intended Audience :: Science/Research',
            'License :: OSI Approved :: GNU Lesser General Public License v2 (LGPLv2)',
            'Operating System :: POSIX',
            'Programming Language :: Python',
            'Topic :: Scientific/Engineering :: Bio-Informatics',
            'Topic :: Scientific/Engineering :: Chemistry',
        ],
        packages=find_packages(exclude=['scripts']),
        package_data = {'propka': ['*.dat', '*.cfg']},
        #scripts = ["scripts/propka31.py"],  # use entry point below
        entry_points = {
          'console_scripts': [
              'propka31 = propka.run:main',
              ],
          },
        zip_safe=True,
        python_requires='>=3.5',
        tests_require=["pandas", "numpy"],
        test_suite="tests",
  )
  
new_contents: #! /usr/bin/python
  # PROPKA 3
  
  from setuptools import setup, find_packages
  
  VERSION = "3.2.0"
  
  setup(
      name="PROPKA",
      version=VERSION,
      description="Heuristic pKa calculations with ligands", long_description="""
  PROPKA predicts the pKa values of ionizable groups in proteins (version 3.0) and
  protein-ligand complexes (version 3.1 and later) based on the 3D structure.
  
  For proteins without ligands both version should produce the same result.
  
  The method is described in the following papers, which you should cite
  in publications:
  
  * Sondergaard, Chresten R., Mats HM Olsson, Michal Rostkowski, and Jan
    H. Jensen. "Improved Treatment of Ligands and Coupling Effects in
    Empirical Calculation and Rationalization of pKa Values." Journal of
    Chemical Theory and Computation 7, no. 7 (2011): 2284-2295.
  
  * Olsson, Mats HM, Chresten R. Sondergaard, Michal Rostkowski, and Jan
    H. Jensen. "PROPKA3: consistent treatment of internal and surface
    residues in empirical pKa predictions." Journal of Chemical Theory
    and Computation 7, no. 2 (2011): 525-537.
  
  See http://propka.org/ for the PROPKA web server.
  """,
      author="Jan H. Jensen",
      author_email="jhjensen@chem.ku.dk",
      license="LGPL v2.1",
      url="http://propka.org",
      keywords="science",
      classifiers=[
          'Development Status :: 6 - Mature',
          'Environment :: Console',
          'Intended Audience :: Science/Research',
          'License :: OSI Approved :: GNU Lesser General Public License v2 (LGPLv2)',
          'Operating System :: POSIX', 'Programming Language :: Python',
          'Topic :: Scientific/Engineering :: Bio-Informatics',
          'Topic :: Scientific/Engineering :: Chemistry',
          ],
      packages=find_packages(exclude=['scripts']),
      package_data={'propka': ['*.dat', '*.cfg']},
      entry_points={'console_scripts': ['propka31 = propka.run:main', ]},
      zip_safe=True,
      python_requires='>=3.5',
      tests_require=["pandas", "numpy"],
      test_suite="tests",
      )
  
subject: Update setup.py with 3.2.0 information.