old_contents: from setuptools import setup, find_packages
  
  # def readme():
  #    with open('README.md') as f:
  #        return f.read()
  
  with open("requirements.txt", "r") as f:
          install_requires = [x.strip() for x in f.readlines() if not x.startswith("#")]
  
  
  setup(name='bcbreport',
        version='0.99.11',
        description='report templates for bcbio analysis.',
        # long_description=readme(),
        classifiers=[
          'Development Status :: 3 - Alpha',
          'License :: OSI Approved :: MIT License',
          'Programming Language :: Python :: 2.7',
          'Topic :: Scientific/Engineering :: Bio-Informatics'
        ],
        keywords='custom pipelines',
        package_data={'bcbreport': ['*.Rmd']},
        # url='http://github.com/lpantano/ich-wrapper',
        author='Lorena Pantano',
        author_email='lpantano@iscb.org',
        license='MIT',
        packages=find_packages(),
        include_package_data=True,
        zip_safe=False)
  
new_contents: from setuptools import setup, find_packages
  
  # def readme():
  #    with open('README.md') as f:
  #        return f.read()
  
  with open("requirements.txt", "r") as f:
          install_requires = [x.strip() for x in f.readlines() if not x.startswith("#")]
  
  
  setup(name='bcbreport',
        version='0.99.12',
        description='report templates for bcbio analysis.',
        # long_description=readme(),
        classifiers=[
          'Development Status :: 3 - Alpha',
          'License :: OSI Approved :: MIT License',
          'Programming Language :: Python :: 2.7',
          'Topic :: Scientific/Engineering :: Bio-Informatics'
        ],
        keywords='custom pipelines',
        package_data={'bcbreport': ['*.Rmd']},
        # url='http://github.com/lpantano/ich-wrapper',
        author='Lorena Pantano',
        author_email='lpantano@iscb.org',
        license='MIT',
        packages=find_packages(),
        include_package_data=True,
        zip_safe=False)
  
subject: bump version