old_contents: 
  import pkg_resources
  try:
      version = pkg_resources.require("sequana")[0].version
  except:
      version = ">=0.7.1"
  
  
  try:
      from easydev.logging_tools import Logging
      logger = Logging("sequana", "WARNING")
  except:
      import colorlog
      logger = colorlog.getLogger("sequana")
  
  
  
  from easydev import CustomConfig
  configuration = CustomConfig("sequana", verbose=False)
  sequana_config_path = configuration.user_config_dir
  
  # This must be import before all other modules (sequana_data function)
  from .datatools import sequana_data
  
  from .assembly import *
  from .adapters import AdapterReader, FindAdaptersFromDesign, Adapter
  from .bamtools import BAM, SAMFlags, SAM, CRAM
  from .bed import BED
  from .bedtools import GenomeCov
  from .cigar import Cigar
  from .coverage import Coverage
  from .expdesign import ExpDesignAdapter
  from .fastq import FastQ, FastQC, Identifier
  from .fasta import FastA
  from .freebayes_vcf_filter import VCF_freebayes
  from .freebayes_bcf_filter import BCF_freebayes
  from .itol import ITOL
  from .kraken_builder import KrakenBuilder
  from .krona import KronaMerger
  from .kraken import KrakenResults, KrakenPipeline, KrakenAnalysis, KrakenDownload, KrakenSequential
  from .pacbio import PacbioSubreads
  from .phred import Quality
  from .rnadiff import RNADiffResults, plot_venn
  from .running_median import RunningMedian
  from .snaketools import *
  from .snpeff import SnpEff
  from .sequence import DNA, RNA, Sequence, Repeats
  
  
  # The standalone app
  from . import scripts
  
  
  
new_contents: 
  import pkg_resources
  try:
      version = pkg_resources.require("sequana")[0].version
  except:
      version = ">=0.8.3"
  
  try:
      from easydev.logging_tools import Logging
      logger = Logging("sequana", "WARNING")
  except:
      import colorlog
      logger = colorlog.getLogger("sequana")
  
  
  from easydev import CustomConfig
  configuration = CustomConfig("sequana", verbose=False)
  sequana_config_path = configuration.user_config_dir
  
  # This must be import before all other modules (sequana_data function)
  from .datatools import sequana_data
  
  from .assembly import *
  from .adapters import AdapterReader, FindAdaptersFromDesign, Adapter
  from .bamtools import BAM, SAMFlags, SAM, CRAM
  from .bed import BED
  from .bedtools import GenomeCov
  from .cigar import Cigar
  from .coverage import Coverage
  from .expdesign import ExpDesignAdapter
  from .fastq import FastQ, FastQC, Identifier
  from .fasta import FastA
  from .freebayes_vcf_filter import VCF_freebayes
  from .freebayes_bcf_filter import BCF_freebayes
  from .itol import ITOL
  from .kraken_builder import KrakenBuilder
  from .krona import KronaMerger
  from .kraken import KrakenResults, KrakenPipeline, KrakenAnalysis, KrakenDownload, KrakenSequential
  from .pacbio import PacbioSubreads
  from .phred import Quality
  from .rnadiff import RNADiffResults, plot_venn
  from .running_median import RunningMedian
  from .snaketools import *
  from .snpeff import SnpEff
  from .sequence import DNA, RNA, Sequence, Repeats
  
  
  # The standalone app
  from . import scripts
  
  
  
subject: increase minimal version