old_contents: # -*- coding: utf-8 -*-
  
  
  class FileTypes(object):
  
      _JAVA_PKG = "com.genestack.api.files."
      _JAVA_BIO_PKG = "com.genestack.bio.files."
  
      # Core file types
      FILE = _JAVA_PKG + "IFile"
  
      DATASET = _JAVA_PKG + "IDataset"
  
      AUXILIARY_FILE = _JAVA_PKG + "IAuxiliaryFile"
      CONTAINER = _JAVA_PKG + 'IContainerFile'
      FOLDER = _JAVA_PKG + "IFolder"
      SEARCH_FOLDER = _JAVA_PKG + "ISearchFolder"
      INDEX_FILE = _JAVA_PKG + "IIndexFile"
  
      APPLICATION_PAGE_FILE = _JAVA_PKG + "IApplicationPageFile"
      DICTIONARY_FILE = _JAVA_PKG + "IDictionaryFile"
      PREFERENCES_FILE = _JAVA_PKG + "IPreferencesFile"
      RAW_FILE = _JAVA_PKG + "IRawFile"
      REPORT_FILE = _JAVA_PKG + "IReportFile"
  
      # Biological file types
      REFERENCE_GENOME = _JAVA_BIO_PKG + "IReferenceGenome"
      VARIATION_FILE = _JAVA_BIO_PKG + "IVariationFile"
      EXTERNAL_DATABASE = _JAVA_BIO_PKG + "IExternalDataBase"
  
      CODON_TABLE = _JAVA_BIO_PKG + "ICodonTable"
      GENOME_ANNOTATIONS = _JAVA_BIO_PKG + "IGenomeAnnotations"
      HT_SEQ_COUNTS = _JAVA_BIO_PKG + "IHTSeqCounts"
      UNALIGNED_READS = _JAVA_BIO_PKG + "IUnalignedReads"
      MICROARRAY_DATA = _JAVA_BIO_PKG + "IMicroarrayData"
      ALIGNED_READS = _JAVA_BIO_PKG + "IAlignedReads"
  
      DIFFERENTIAL_EXPRESSION_FILE = _JAVA_BIO_PKG + "differentialExpression.IDifferentialExpressionFile"
  
      GENOME_BED_DATA = _JAVA_BIO_PKG + "IGenomeBEDData"
      GENOME_WIGGLE_DATA = _JAVA_BIO_PKG + "IGenomeWiggleData"
  
      FEATURE_LIST = _JAVA_BIO_PKG + "IFeatureList"
      GENE_EXPRESSION_SIGNATURE = _JAVA_BIO_PKG + "IGeneExpressionSignature"
  
new_contents: # -*- coding: utf-8 -*-
  
  
  class FileTypes(object):
  
      _JAVA_PKG = "com.genestack.api.files."
      _JAVA_BIO_PKG = "com.genestack.bio.files."
  
      # Core file types
      FILE = _JAVA_PKG + "IFile"
  
      DATASET = _JAVA_PKG + "IDataset"
  
      AUXILIARY_FILE = _JAVA_PKG + "IAuxiliaryFile"
      CONTAINER = _JAVA_PKG + 'IContainerFile'
      FOLDER = _JAVA_PKG + "IFolder"
      SEARCH_FOLDER = _JAVA_PKG + "ISearchFolder"
      INDEX_FILE = _JAVA_PKG + "IIndexFile"
  
      APPLICATION_PAGE_FILE = _JAVA_PKG + "IApplicationPageFile"
      DICTIONARY_FILE = _JAVA_PKG + "IDictionaryFile"
      PREFERENCES_FILE = _JAVA_PKG + "IPreferencesFile"
      RAW_FILE = _JAVA_PKG + "IRawFile"
      REPORT_FILE = _JAVA_PKG + "IReportFile"
      SAMPLE = _JAVA_PKG + "ISample"
  
      # Biological file types
      REFERENCE_GENOME = _JAVA_BIO_PKG + "IReferenceGenome"
      VARIATION_FILE = _JAVA_BIO_PKG + "IVariationFile"
      EXTERNAL_DATABASE = _JAVA_BIO_PKG + "IExternalDataBase"
  
      CODON_TABLE = _JAVA_BIO_PKG + "ICodonTable"
      GENOME_ANNOTATIONS = _JAVA_BIO_PKG + "IGenomeAnnotations"
      HT_SEQ_COUNTS = _JAVA_BIO_PKG + "IHTSeqCounts"
      UNALIGNED_READS = _JAVA_BIO_PKG + "IUnalignedReads"
      MICROARRAY_DATA = _JAVA_BIO_PKG + "IMicroarrayData"
      ALIGNED_READS = _JAVA_BIO_PKG + "IAlignedReads"
  
      DIFFERENTIAL_EXPRESSION_FILE = _JAVA_BIO_PKG + "differentialExpression.IDifferentialExpressionFile"
  
      GENOME_BED_DATA = _JAVA_BIO_PKG + "IGenomeBEDData"
      GENOME_WIGGLE_DATA = _JAVA_BIO_PKG + "IGenomeWiggleData"
  
      FEATURE_LIST = _JAVA_BIO_PKG + "IFeatureList"
      GENE_EXPRESSION_SIGNATURE = _JAVA_BIO_PKG + "IGeneExpressionSignature"
  
subject: add 'sample' to valid file types for filtering