old_contents: 
  import re
  
  from analytics.DNAanalysis import complementary
  
  fasta_file = input('Type your fasta file name: ')
  
  CODONS = {
      'ATA':'I', 'ATC':'I', 'ATT':'I', 'ATG':'M',
      'ACA':'T', 'ACC':'T', 'ACG':'T', 'ACT':'T',
      'AAC':'N', 'AAT':'N', 'AAA':'K', 'AAG':'K',
      'AGC':'S', 'AGT':'S', 'AGA':'R', 'AGG':'R',
      'CTA':'L', 'CTC':'L', 'CTG':'L', 'CTT':'L',
      'CCA':'P', 'CCC':'P', 'CCG':'P', 'CCT':'P',
      'CAC':'H', 'CAT':'H', 'CAA':'Q', 'CAG':'Q',
      'CGA':'R', 'CGC':'R', 'CGG':'R', 'CGT':'R',
      'GTA':'V', 'GTC':'V', 'GTG':'V', 'GTT':'V',
      'GCA':'A', 'GCC':'A', 'GCG':'A', 'GCT':'A',
      'GAC':'D', 'GAT':'D', 'GAA':'E', 'GAG':'E',
      'GGA':'G', 'GGC':'G', 'GGG':'G', 'GGT':'G',
      'TCA':'S', 'TCC':'S', 'TCG':'S', 'TCT':'S',
      'TTC':'F', 'TTT':'F', 'TTA':'L', 'TTG':'L',
      'TAC':'Y', 'TAT':'Y', 'TAA':'_', 'TAG':'_',
      'TGC':'C', 'TGT':'C', 'TGA':'_', 'TGG':'W'
      }
  
  def dna2AA(fastaFile,codons):
      AAsequence = ''
      with open(fastaFile) as fileObj:
          for line in fileObj:
              line.strip()
          cont = fileObj.read()
          sequenceSearch=re.compile(r'')                                                #need to complete
          content = sequenceSearch.search(cont)
          print(content.group())
          for i in range(0,len(content.group()),3):
              seq = cont[i:i+3]
              AAsequence += codons[seq]
      return AAsequence
  
new_contents: 
  import re
  
  fasta_file = input('Type your fasta file name: ')
  
  CODONS = {
      'ATA':'I', 'ATC':'I', 'ATT':'I', 'ATG':'M',
      'ACA':'T', 'ACC':'T', 'ACG':'T', 'ACT':'T',
      'AAC':'N', 'AAT':'N', 'AAA':'K', 'AAG':'K',
      'AGC':'S', 'AGT':'S', 'AGA':'R', 'AGG':'R',
      'CTA':'L', 'CTC':'L', 'CTG':'L', 'CTT':'L',
      'CCA':'P', 'CCC':'P', 'CCG':'P', 'CCT':'P',
      'CAC':'H', 'CAT':'H', 'CAA':'Q', 'CAG':'Q',
      'CGA':'R', 'CGC':'R', 'CGG':'R', 'CGT':'R',
      'GTA':'V', 'GTC':'V', 'GTG':'V', 'GTT':'V',
      'GCA':'A', 'GCC':'A', 'GCG':'A', 'GCT':'A',
      'GAC':'D', 'GAT':'D', 'GAA':'E', 'GAG':'E',
      'GGA':'G', 'GGC':'G', 'GGG':'G', 'GGT':'G',
      'TCA':'S', 'TCC':'S', 'TCG':'S', 'TCT':'S',
      'TTC':'F', 'TTT':'F', 'TTA':'L', 'TTG':'L',
      'TAC':'Y', 'TAT':'Y', 'TAA':'_', 'TAG':'_',
      'TGC':'C', 'TGT':'C', 'TGA':'_', 'TGG':'W'
      }
  
  def dna2aminoacid(fasta_file, codons):
      AAsequence = ''
      with open(fasta_file) as fileObj:
          for line in fileObj:
              line.strip()
          cont = fileObj.read()
          sequenceSearch = re.compile(r'')                                                #need to complete
          content = sequenceSearch.search(cont)
          print(content.group())
          for i in range(0,len(content.group()),3):
              seq = cont[i:i+3]
              AAsequence += codons[seq]
      return AAsequence
  
subject: Update protein_analysis.py