old_contents: #!/usr/bin/env python
  
  from distutils.core import setup, Extension
  import numpy
  #from Cython.Distutils import build_ext
  from Cython.Build import cythonize
  
  import os
  #import glob
  
  version='0.1'
  
  ROOT = os.path.abspath(os.path.dirname(__file__))
  README = open(os.path.join(ROOT, 'README.md')).read()
  
  setup(name='python-webgen',
        version=version,
        description='Python Optimal Transport Library',
        long_description=README,
        author=u'Remi Flamary',
        author_email='remi.flamary@gmail.com',
        url='https://github.com/rflamary/POT',
        packages=['ot','ot.emd'],
       ext_modules = cythonize(Extension(
                  "ot.emd.emd",                                # the extesion name
                   sources=["ot/emd/emd.pyx", "ot/emd/EMD_wrap.cpp"], # the Cython source and
                                                          # additional C++ source files
                   #extra_compile_args=['-fopenmp'],
                   #extra_link_args=['-fopenmp'],
                   language="c++",                        # generate and compile C++ code,
                   include_dirs=[numpy.get_include(),os.path.join(ROOT,'ot/emd')])),
        platforms=['linux','macosx','windows'],
        license = 'MIT',
        scripts=[],
        data_files=[],
        requires=["numpy (>=1.11)"],
        classifiers=[
          'Development Status :: 4 - Beta',
          'Intended Audience :: Developers',
          'Environment :: Console',
          'Operating System :: OS Independent',
          'Operating System :: MacOS',
          'Operating System :: POSIX',
          'Programming Language :: Python',
          'Topic :: Utilities'
      ]
       )
  
new_contents: #!/usr/bin/env python
  
  from distutils.core import setup, Extension
  import numpy
  #from Cython.Distutils import build_ext
  from Cython.Build import cythonize
  
  import os
  #import glob
  
  version='0.1'
  
  ROOT = os.path.abspath(os.path.dirname(__file__))
  README = open(os.path.join(ROOT, 'README.md')).read()
  
  setup(name='python-webgen',
        version=version,
        description='Python Optimal Transport Library',
        long_description=README,
        author=u'Remi Flamary',
        author_email='remi.flamary@gmail.com',
        url='https://github.com/rflamary/POT',
        packages=['ot','ot.emd','ot.bregman'],
       ext_modules = cythonize(Extension(
                  "ot.emd.emd",                                # the extesion name
                   sources=["ot/emd/emd.pyx", "ot/emd/EMD_wrap.cpp"], # the Cython source and
                                                          # additional C++ source files
                   #extra_compile_args=['-fopenmp'],
                   #extra_link_args=['-fopenmp'],
                   language="c++",                        # generate and compile C++ code,
                   include_dirs=[numpy.get_include(),os.path.join(ROOT,'ot/emd')])),
        platforms=['linux','macosx','windows'],
        license = 'MIT',
        scripts=[],
        data_files=[],
        requires=["numpy (>=1.11)"],
        classifiers=[
          'Development Status :: 4 - Beta',
          'Intended Audience :: Developers',
          'Environment :: Console',
          'Operating System :: OS Independent',
          'Operating System :: MacOS',
          'Operating System :: POSIX',
          'Programming Language :: Python',
          'Topic :: Utilities'
      ]
       )
  
subject: correct setup.py