old_contents: # -*- coding: utf-8 -*-
  
  from setuptools import setup, find_packages
  
  with open('README.md') as f:
      readme = f.read()
  
  with open('LICENSE') as f:
      license = f.read()
  
  with open('yaps2/version.py') as f:
      exec(f.read())
  
  setup(
      name='yaps2',
      version=__version__,
      description='Yet Another Pipeline Setup',
      long_description=readme,
      author='Indraniel Das',
      author_email='idas@wustl.edu',
      license=license,
      url='https://github.com/indraniel/yaps2',
      dependency_links=[
          'https://github.com/indraniel/COSMOS2/tarball/enable-lsf-rebase#egg=cosmos-wfm-2.0.10.indraniel4'
          'https://github.com/brentp/cyvcf2/tarball/276e642245777523b3acd42075a2857da90f1bf3#egg=cyvcf2-0.7.0',
      ],
      install_requires=[
          'cosmos-wfm==2.0.10.indraniel4https',
          'click==6.7',
          'clint==0.5.1',
          'matplotlib==1.5.3',
          'scipy==0.18.1',
          'pandas==0.18.1',
          'seaborn==0.7.1',
          'Cython==0.25.2',
          'cyvcf2==0.7.0',
      ],
      entry_points='''
          [console_scripts]
          yaps2=yaps2.cli:cli
      ''',
      packages=find_packages(exclude=('tests', 'docs')),
      include_package_data=True,
  )
  
new_contents: # -*- coding: utf-8 -*-
  
  from setuptools import setup, find_packages
  
  with open('README.md') as f:
      readme = f.read()
  
  with open('LICENSE') as f:
      license = f.read()
  
  with open('yaps2/version.py') as f:
      exec(f.read())
  
  setup(
      name='yaps2',
      version=__version__,
      description='Yet Another Pipeline Setup',
      long_description=readme,
      author='Indraniel Das',
      author_email='idas@wustl.edu',
      license=license,
      url='https://github.com/indraniel/yaps2',
      dependency_links=[
          'https://github.com/indraniel/COSMOS2/tarball/enable-lsf-rebase#egg=cosmos-wfm-2.0.10.indraniel4'
          'https://github.com/brentp/cyvcf2/tarball/276e642245777523b3acd42075a2857da90f1bf3#egg=cyvcf2-0.7.0',
      ],
      install_requires=[
          'cosmos-wfm==2.0.10.indraniel4',
          'click==6.7',
          'clint==0.5.1',
          'matplotlib==1.5.3',
          'scipy==0.18.1',
          'pandas==0.18.1',
          'seaborn==0.7.1',
          'Cython==0.25.2',
          'cyvcf2==0.7.0',
      ],
      entry_points='''
          [console_scripts]
          yaps2=yaps2.cli:cli
      ''',
      packages=find_packages(exclude=('tests', 'docs')),
      include_package_data=True,
  )
  
subject: Revert "+ include the 'https' string in the version??"