old_contents: import os
  
  from setuptools import setup, find_packages
  
  
  def read(fname):
      return open(os.path.join(os.path.dirname(__file__), fname)).read()
  
  
  setup(name='deepcpg',
        version='1.0.0',
        description='Deep learning for predicting CpG methylation',
        long_description=read('README.md'),
        author='Christof Angermueller',
        author_email='cangermueller@gmail.com',
        license="MIT",
        url='https://github.com/cangermueller/deepcpg',
        packages=find_packages(),
        install_requires=['h5py',
                          'argparse',
                          'scikit-learn',
                          'scipy',
                          'numpy',
                          'pandas',
                          'pytest',
                          'keras',
                          'matplotlib',
                          'seaborn'],
        keywords=['Deep learning',
                  'Deep neural networks',
                  'Epigenetics',
                  'DNA methylation',
                  'Single cells']
        )
  
new_contents: import os
  
  from setuptools import setup, find_packages
  
  
  def read(fname):
      return open(os.path.join(os.path.dirname(__file__), fname)).read()
  
  
  setup(name='deepcpg',
        version='1.0.0',
        description='Deep learning for predicting CpG methylation',
        long_description=read('README.md'),
        author='Christof Angermueller',
        author_email='cangermueller@gmail.com',
        license="MIT",
        url='https://github.com/cangermueller/deepcpg',
        packages=find_packages(),
        install_requires=['h5py',
                          'argparse',
                          'scikit-learn',
                          'scipy',
                          'numpy',
                          'pandas',
                          'pytest',
                          'keras',
                          'matplotlib',
                          'seaborn'],
        keywords=['Deep learning',
                  'Deep neural networks',
                  'Epigenetics',
                  'DNA methylation',
                  'Single cells'],
        classifiers=['Development Status :: 5 - Production/Stable',
                     'Environment :: Console',
                     'Intended Audience :: Science/Research',
                     'License :: OSI Approved :: MIT License',
                     'Natural Language :: English',
                     'Programming Language :: Python',
                     'Programming Language :: Python :: 3',
                     'Topic :: Scientific/Engineering :: Artificial Intelligence',
                     'Topic :: Scientific/Engineering :: Bio-Informatics'
                     'Topic :: Scientific/Engineering :: Information Analysis'
                     ]
        )
  
subject: Update documentation