old_contents: import ez_setup
  ez_setup.use_setuptools()
  from setuptools import setup
  import sys
  import os
  import numpy
  
  
  version_py = os.path.join(os.path.dirname(__file__), 'metaseq', 'version.py')
  version = open(version_py).read().split('=')[-1].strip().replace('"','')
  
  
  long_description = """
  metaseq is a Python framework for genomic data analysis (primarily
  high-throughput sequencing, but can be used for much more).  It ties
  together other frameworks like BEDTools/pybedtools, samtools/pysam, bx-python,
  HTSeq, gffutils, and matplotlib.
  """
  setup(
          name='metaseq',
          version=version,
          long_description=long_description,
          install_requires=['bx-python', 'numpy', 'HTSeq', 'matplotlib', 'scipy',
                            'scikits.learn', 'pybedtools', 'gffutils',
                            'argparse'],
          packages=['metaseq', 'metaseq.test', 'metaseq.test.data', 'metaseq.integration'],
          package_data={'metaseq':['test/data/*']},
          scripts=[
              'metaseq/scripts/download_metaseq_example_data.py',
              'metaseq/scripts/metaseq-cli',
          ],
          author='Ryan Dale',
          author_email='dalerr@niddk.nih.gov',
          url='http://github.com/daler/metaseq',
          classifiers=[
              'Development Status :: 4 - Beta',
              'Intended Audience :: Science/Research',
              'License :: OSI Approved :: GNU General Public License (GPL)',
              'Topic :: Scientific/Engineering :: Bio-Informatics']
      )
  
new_contents: import ez_setup
  ez_setup.use_setuptools()
  from setuptools import setup
  import sys
  import os
  import numpy
  
  
  version_py = os.path.join(os.path.dirname(__file__), 'metaseq', 'version.py')
  version = open(version_py).read().split('=')[-1].strip().replace('"','')
  
  
  long_description = """
  metaseq is a Python framework for genomic data analysis (primarily
  high-throughput sequencing, but can be used for much more).  It ties
  together other frameworks like BEDTools/pybedtools, samtools/pysam, bx-python,
  HTSeq, gffutils, and matplotlib.
  """
  setup(
          name='metaseq',
          version=version,
          long_description=long_description,
          install_requires=['bx-python', 'numpy', 'HTSeq', 'matplotlib', 'scipy',
                            'scikits.learn', 'pysam', 'statsmodels',
                            'pybedtools', 'gffutils', 'argparse'],
          packages=['metaseq', 'metaseq.test', 'metaseq.test.data', 'metaseq.integration'],
          package_data={'metaseq':['test/data/*']},
          scripts=[
              'metaseq/scripts/download_metaseq_example_data.py',
              'metaseq/scripts/metaseq-cli',
          ],
          author='Ryan Dale',
          author_email='dalerr@niddk.nih.gov',
          url='http://github.com/daler/metaseq',
          classifiers=[
              'Development Status :: 4 - Beta',
              'Intended Audience :: Science/Research',
              'License :: OSI Approved :: GNU General Public License (GPL)',
              'Topic :: Scientific/Engineering :: Bio-Informatics']
      )
  
subject: fix #6