old_contents: """small RNA-seq pipeline"""
  
  from setuptools import setup, find_packages
  
  def readme():
      with open('README.rst') as f:
          return f.read()
  
  # with open("reqs.txt", "r") as f:
  #     install_requires = [x.strip() for x in f.readlines() if not x.startswith("#")]
  
  
  setup(name='seqcluster',
        version='1.2.3',
        description='Small RNA-seq pipeline',
        long_description=readme(),
        classifiers=[
          'License :: OSI Approved :: MIT License',
          'Programming Language :: Python :: 2.7',
          'Topic :: Scientific/Engineering :: Bio-Informatics'
        ],
        keywords='RNA-seq miRNA snoRNA NGS',
        url='http://github.com/lpantano/seqcluster',
        author='Lorena Pantano',
        author_email='lpantano@iscb.org',
        license='MIT',
        packages=find_packages(),
        test_suite='nose',
        entry_points={
            'console_scripts': ['seqcluster=seqcluster.command_line:main', 'seqcluster_install=seqcluster.install:main'],
        },
        package_data={'seqcluster.templates': ['*']},
        include_package_data=True,
        zip_safe=False)
  
new_contents: """small RNA-seq pipeline"""
  
  from setuptools import setup, find_packages
  
  def readme():
      with open('README.rst') as f:
          return f.read()
  
  # with open("reqs.txt", "r") as f:
  #     install_requires = [x.strip() for x in f.readlines() if not x.startswith("#")]
  
  
  setup(name='seqcluster',
        version='1.2.4a',
        description='Small RNA-seq pipeline',
        long_description=readme(),
        classifiers=[
          'License :: OSI Approved :: MIT License',
          'Programming Language :: Python :: 2.7',
          'Topic :: Scientific/Engineering :: Bio-Informatics'
        ],
        keywords='RNA-seq miRNA snoRNA NGS',
        url='http://github.com/lpantano/seqcluster',
        author='Lorena Pantano',
        author_email='lpantano@iscb.org',
        license='MIT',
        packages=find_packages(),
        test_suite='nose',
        entry_points={
            'console_scripts': ['seqcluster=seqcluster.command_line:main', 'seqcluster_install=seqcluster.install:main'],
        },
        package_data={'seqcluster.templates': ['*']},
        include_package_data=True,
        zip_safe=False)
  
subject: Update to devel