old_contents: '''
  Created on 2 Mar 2016
  
  @author: ikalvari
  
  Description: This is a configuration file with all the paths on the cluster
  
  '''
  
  from config import rfam_local as cfl
  
  # ------------------------------DATABASES--------------------------------------
  # Dictionaries
  RFAMLIVEPUB = cfl.RFAMLIVEPUB
  
  RFAMLIVE = cfl.RFAMLIVE
  
  RFAMLIVE_DJANGO = cfl.RFAMLIVE_DJANGO
  
  #RFAM12 = cfl.RFAM12
  
  RFAMLIVELOC = cfl.RFAMLIVELOC
  
  #XFAMDEV = cfl.XFAMDEV
  
  # ----------------------------Django settings----------------------------------
  
  # DATABASES
  RFAMDEV = cfl.RFAMDEV
  
  RFAMLOC = cfl.RFAMLOC
  
  # SETTINGS
  SECRET_KEY = cfl.SECRET_KEY
  
  # ---------------------------------PATHS---------------------------------------
  
  FA_GEN = cfl.FA_GEN
  ESL_PATH = cfl.ESL_SFETCH
  RFAMSEQ_PATH = cfl.RFAMSEQ_PATH
  FAM_VIEW_PL = cfl.FAM_VIEW_PL
  
  TMP_PATH = cfl.TMP_PATH
  
  ESL_FSEQ_PATH = cfl.ESL_FSEQ_PATH
  FSR_PATH = cfl.FSR_PATH
  FSR_LOCAL = cfl.FSR_LOCAL
  ENA_URL = cfl.ENA_URL
  
  # Maybe delete these
  TAX_NODES_DUMP = cfl.TAX_NODES_DUMP
  TAX_NAMES_DUMP = cfl.TAX_NAMES_DUMP
  RFAM_NCBI_IDS = cfl.RFAM_NCBI_IDS
  VALID_NCBI_IDS = cfl.VALID_NCBI_IDS
  NCBI_RANKS = cfl.NCBI_RANKS
  
  # -------------------------------LSF GROUPS------------------------------------
  # rfamprod privileges required
  FA_EXPORT_GROUP = cfl.FA_EXPORT_GROUP
  RFAM_VIEW_GROUP = cfl.RFAM_VIEW_GROUP
  
new_contents: '''
  Created on 2 Mar 2016
  
  @author: ikalvari
  
  Description: This is a configuration file with all the paths on the cluster
  
  '''
  
  from config import rfam_local as cfl
  
  # ------------------------------DATABASES--------------------------------------
  # Dictionaries
  RFAMLIVEPUB = cfl.RFAMLIVEPUB
  
  RFAMLIVE = cfl.RFAMLIVE
  
  RFAMLIVE_DJANGO = cfl.RFAMLIVE_DJANGO
  
  #RFAM12 = cfl.RFAM12
  
  RFAMLIVELOC = cfl.RFAMLIVELOC
  
  #XFAMDEV = cfl.XFAMDEV
  
  # ----------------------------Django settings----------------------------------
  
  # DATABASES
  RFAMDEV = cfl.RFAMDEV
  
  RFAMLOC = cfl.RFAMLOC
  
  # SETTINGS
  SECRET_KEY = cfl.SECRET_KEY
  
  # ---------------------------------PATHS---------------------------------------
  
  FA_GEN = cfl.FA_GEN
  ESL_PATH = cfl.ESL_SFETCH
  RFAMSEQ_PATH = cfl.RFAMSEQ_PATH
  FAM_VIEW_PL = cfl.FAM_VIEW_PL
  
  TMP_PATH = cfl.TMP_PATH
  
  ESL_FSEQ_PATH = cfl.ESL_FSEQ_PATH
  FSR_PATH = cfl.FSR_PATH
  FSR_LOCAL = cfl.FSR_LOCAL
  ENA_URL = cfl.ENA_URL
  
  # Maybe delete these
  TAX_NODES_DUMP = cfl.TAX_NODES_DUMP
  TAX_NAMES_DUMP = cfl.TAX_NAMES_DUMP
  RFAM_NCBI_IDS = cfl.RFAM_NCBI_IDS
  VALID_NCBI_IDS = cfl.VALID_NCBI_IDS
  NCBI_RANKS = cfl.NCBI_RANKS
  
  # -------------------------------LSF GROUPS------------------------------------
  # rfamprod privileges required
  FA_EXPORT_GROUP = cfl.FA_EXPORT_GROUP
  RFAM_VIEW_GROUP = cfl.RFAM_VIEW_GROUP
  
  # --------------------------------Rfam info------------------------------------
  
  RFAM_EMAIL = cfl.RFAM_EMAIL
  RFAM_FTP = cfl.RFAM_FTP
  BROWSER_HUB_DESC_URL = cfl.BROWSER_HUB_DESC_URL
subject: Add genome browser hub url in config