old_contents: # -*- coding: utf-8 -*-
  # Copyright 2013 Novo Nordisk Foundation Center for Biosustainability,
  # Technical University of Denmark.
  #
  # Licensed under the Apache License, Version 2.0 (the "License");
  # you may not use this file except in compliance with the License.
  # You may obtain a copy of the License at
  #
  #     http://www.apache.org/licenses/LICENSE-2.0
  #
  # Unless required by applicable law or agreed to in writing, software
  # distributed under the License is distributed on an "AS IS" BASIS,
  # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
  # See the License for the specific language governing permissions and
  # limitations under the License.
  
  from __future__ import absolute_import, print_function
  
  from setuptools import setup, find_packages
  requirements = [
      "cameo>=v0.2",
      "ipython>=3.0",
      "pyzmq>=14.5", 'cobra>=0.3.2'
  ]
  
  setup(
      name='driven',
      version="0.0.0",
      packages=find_packages(),
      install_requires=requirements,
      include_package_data=True,
      author='Joao Cardoso',
      author_email='jooaaoo@gmail.com',
      description='driven - data-driven constraint-based analysis',
      license='Apache License Version 2.0',
      keywords='biology metabolism bioinformatics high-throughput',
      url='TBD',
      long_description="A package for data driven modeling and analysis.",
      classifiers=[
          'Development Status :: 1 - Planning',
          'Topic :: Utilities',
          'Programming Language :: Python :: 2.6',
          'Programming Language :: Python :: 2.7',
          'Programming Language :: Python :: 3.4',
          'License :: OSI Approved :: Apache Software License'
      ],
  )
  
new_contents: # -*- coding: utf-8 -*-
  # Copyright 2013 Novo Nordisk Foundation Center for Biosustainability,
  # Technical University of Denmark.
  #
  # Licensed under the Apache License, Version 2.0 (the "License");
  # you may not use this file except in compliance with the License.
  # You may obtain a copy of the License at
  #
  #     http://www.apache.org/licenses/LICENSE-2.0
  #
  # Unless required by applicable law or agreed to in writing, software
  # distributed under the License is distributed on an "AS IS" BASIS,
  # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
  # See the License for the specific language governing permissions and
  # limitations under the License.
  
  from __future__ import absolute_import, print_function
  
  from setuptools import setup, find_packages
  requirements = [
      'cameo>=0.5',
      'cobra>=0.4',
      'ipython>=3.0',
      'pyzmq>=14.5'
  ]
  
  setup(
      name='driven',
      version="0.0.1a1",
      packages=find_packages(),
      install_requires=requirements,
      include_package_data=True,
      author='Joao Cardoso',
      author_email='jooaaoo@gmail.com',
      description='driven - data-driven constraint-based analysis',
      license='Apache License Version 2.0',
      keywords='biology metabolism bioinformatics high-throughput',
      url='TBD',
      long_description="A package for data driven modeling and analysis.",
      classifiers=[
          'Development Status :: 1 - Planning',
          'Topic :: Utilities',
          'Programming Language :: Python :: 2.6',
          'Programming Language :: Python :: 2.7',
          'Programming Language :: Python :: 3.4',
          'License :: OSI Approved :: Apache Software License'
      ],
  )
  
subject: update requirements