old_contents: #!/usr/bin/env python
  # ----------------------------------------------------------------------------
  # Copyright (c) 2015--, ghost-tree development team.
  #
  # Distributed under the terms of the Modified BSD License.
  #
  # The full license is in the LICENSE file, distributed with this software.
  # ----------------------------------------------------------------------------
  # setup.py copied and modified from https://github.com/biocore/scikit-bio
  from setuptools import find_packages, setup
  from glob import glob
  
  __version__ = "0.2.1"
  
  classes = """
      Development Status :: 1 - Planning
      License :: OSI Approved :: BSD License
      Topic :: Scientific/Engineering
      Topic :: Scientific/Engineering :: Bio-Informatics
      Programming Language :: Python :: 3.4
      Programming Language :: Python :: 3.5
      Programming Language :: Python :: 3.6
      Operating System :: Unix
      Operating System :: POSIX
      Operating System :: MacOS :: MacOS X
  """
  classifiers = [s.strip() for s in classes.split('\n') if s]
  
  description = ('Tool for creating hybrid-gene phylogenetic trees')
  
  with open('README.rst') as f:
      long_description = f.read()
  
  setup(name='ghost-tree',
        version=__version__,
        license='BSD',
        description=description,
        long_description=long_description,
        author="ghost-tree development team",
        author_email="jennietf@gmail.com",
        maintainer="ghost-tree development team",
        maintainer_email="jennietf@gmail.com",
        test_suite='nose.collector',
        packages=find_packages(),
        scripts=glob("scripts/*"),
        install_requires=['scikit-bio >=0.5.1', 'click >= 4.0'],
        extras_require={'test': ["nose >= 0.10.1", "pep8", "flake8"]},
        classifiers=classifiers
        )
  
new_contents: #!/usr/bin/env python
  # ----------------------------------------------------------------------------
  # Copyright (c) 2015--, ghost-tree development team.
  #
  # Distributed under the terms of the Modified BSD License.
  #
  # The full license is in the LICENSE file, distributed with this software.
  # ----------------------------------------------------------------------------
  # setup.py copied and modified from https://github.com/biocore/scikit-bio
  from setuptools import find_packages, setup
  from glob import glob
  
  __version__ = "0.2.2"
  
  classes = """
      Development Status :: 1 - Planning
      License :: OSI Approved :: BSD License
      Topic :: Scientific/Engineering
      Topic :: Scientific/Engineering :: Bio-Informatics
      Programming Language :: Python :: 3.4
      Programming Language :: Python :: 3.5
      Programming Language :: Python :: 3.6
      Operating System :: Unix
      Operating System :: POSIX
      Operating System :: MacOS :: MacOS X
  """
  classifiers = [s.strip() for s in classes.split('\n') if s]
  
  description = ('Tool for creating hybrid-gene phylogenetic trees')
  
  with open('README.rst') as f:
      long_description = f.read()
  
  setup(name='ghost-tree',
        version=__version__,
        license='BSD',
        description=description,
        long_description=long_description,
        author="ghost-tree development team",
        author_email="jennietf@gmail.com",
        maintainer="ghost-tree development team",
        maintainer_email="jennietf@gmail.com",
        test_suite='nose.collector',
        packages=find_packages(),
        scripts=glob("scripts/*"),
        install_requires=['scikit-bio >=0.5.1', 'click >= 4.0'],
        extras_require={'test': ["nose >= 0.10.1", "pep8", "flake8"]},
        classifiers=classifiers
        )
  
subject: bump to v.0.2.2