old_contents: # -*- coding: utf-8 -*-
  
  from setuptools import setup, find_packages
  
  setup (
         name='funregulation',
         version='0.1',
         packages=find_packages(),
  
         # Declare your packages' dependencies here, for eg:
         install_requires=['foo>=3'],
  
         # Fill in these to make your Egg ready for upload to
         # PyPI
         author='Alexandre Lenz',
         author_email='arlenz@ucs.br',
  
         #summary = 'Just another Python package for the cheese shop',
         url='',
         license='',
         long_description='Long description of the package',
  
         # could also include long_description, download_url, classifiers, etc.
  
    
         )
  
new_contents: from __future__ import print_function
  from setuptools import setup, find_packages
  from setuptools.command.test import test as TestCommand
  import io
  import codecs
  import os
  import sys
  
  import funregulation
  
  here = os.path.abspath(os.path.dirname(__file__))
  
  def read(*filenames, **kwargs):
      encoding = kwargs.get('encoding', 'utf-8')
      sep = kwargs.get('sep', '\n')
      buf = []
      for filename in filenames:
          with io.open(filename, encoding=encoding) as f:
              buf.append(f.read())
      return sep.join(buf)
  
  long_description = read('README.md')
  
  class PyTest(TestCommand):
      def finalize_options(self):
          TestCommand.finalize_options(self)
          self.test_args = []
          self.test_suite = True
  
      def run_tests(self):
          import pytest
          errcode = pytest.main(self.test_args)
          sys.exit(errcode)
  
  setup(
      name='funregulation',
      version=funregulation.__version__,
      url='https://github.com/alexandrelenz/funregulation.git',
      license='BSD 2-clause',
      author='Alexandre Lenz',
      tests_require=['pytest'],
      install_requires=['biopython>=1.65'],
      cmdclass={'test': PyTest},
      author_email='arlenz@ucs.br',
      keywords = "bioinformatics",
      description='Pipeline to predict and annotate fungal promoter elements and transcription factor binding sites',
      long_description=long_description,
      packages=['funregulation'],
      include_package_data=True,
      platforms='any',
      test_suite='tests',
      classifiers = [
          'Programming Language :: Python',
          'Natural Language :: Portuguese',
          'Intended Audience :: Bioinformatics Users',
          'License :: BSD 2-clause "Simplified" License',
          'Operating System :: OS Independent',
          "Topic :: Scientific/Engineering :: Bioinformatics",
          'Topic :: Software Development :: Libraries :: Python Modules',
          ],
      extras_require={
          'testing': ['pytest'],
      }
  )
  
subject: update setup.py