old_contents: from setuptools import setup, find_packages
  import os
  import subprocess
  
  os.system("pip install git+https://github.com/ComparativeGenomicsToolkit/sonLib@toil")
  
  versionFile = "src/cactus/shared/version.py"
  if os.path.exists(versionFile):
      os.remove(versionFile)
  git_commit = subprocess.check_output('git log --pretty=oneline -n 1 -- $(pwd)', shell=True).split()[0]
  with open(versionFile, 'w') as versionFH:
      versionFH.write("cactus_commit = '%s'" % git_commit)
  
  
  setup(
      name="progressiveCactus",
      version="1.0",
      author="Benedict Paten",
      package_dir = {'': 'src'},
      packages=find_packages(where='src'),
      include_package_data=True,
      package_data={'cactus': ['*_config.xml']},
      # We use the __file__ attribute so this package isn't zip_safe.
      zip_safe=False,
  
      install_requires=[
          'subprocess32',
          'psutil',
          'networkx'],
      
      entry_points={
          'console_scripts': ['progressiveCactus = cactus.progressive.cactus_progressive:main']},)
  
new_contents: from setuptools import setup, find_packages
  import os
  import subprocess
  
  os.system("pip install git+https://github.com/ComparativeGenomicsToolkit/sonLib@toil")
  
  versionFile = "src/cactus/shared/version.py"
  if os.path.exists(versionFile):
      os.remove(versionFile)
  git_commit = subprocess.check_output('git log --pretty=oneline -n 1 -- $(pwd)', shell=True).split()[0]
  with open(versionFile, 'w') as versionFH:
      versionFH.write("cactus_commit = '%s'" % git_commit)
  
  
  setup(
      name="progressiveCactus",
      version="1.0",
      author="Benedict Paten",
      package_dir = {'': 'src'},
      packages=find_packages(where='src'),
      include_package_data=True,
      package_data={'cactus': ['*_config.xml']},
      # We use the __file__ attribute so this package isn't zip_safe.
      zip_safe=False,
  
      install_requires=[
          'subprocess32',
          'psutil',
          'networkx'],
      
      entry_points={
          'console_scripts': ['cactus = cactus.progressive.cactus_progressive:main']},)
  
subject: Change entrypoint name from 'progressiveCactus' to 'cactus'