old_contents: """Test functions for util.ample_util"""
  
  import cPickle
  import os
  import unittest
  from ample.util import ample_util
  from ample.constants import AMPLE_PKL, SHARE_DIR
  
  class Test(unittest.TestCase):
  
      def test_find_exe(self):
          gesamt_exe = os.path.basename(ample_util.find_exe("gesamt" + ample_util.EXE_EXT))
          self.assertTrue("gesamt.exe", gesamt_exe)
          spicker_exe = os.path.basename(ample_util.find_exe("spicker" + ample_util.EXE_EXT))
          self.assertTrue("spicker.exe", spicker_exe)
          theseus_exe = os.path.basename(ample_util.find_exe("theseus" + ample_util.EXE_EXT))
          self.assertTrue("theseus", theseus_exe)
          
      def test_resultsd_fix_path(self):
          with open(os.path.join(SHARE_DIR,'testfiles', AMPLE_PKL)) as f: optd = cPickle.load(f)
          d = ample_util.amoptd_fix_path(optd, newroot='/foo/bar')
          self.assertEqual(d['fasta'],'/foo/bar/AMPLE_0/ampl_.fasta')
          self.assertEqual(d['mrbump_results'][0]['PHASER_logfile'],'/foo/bar/AMPLE_0/MRBUMP/search_c1_t69_r3_polyAla_mrbump/data/loc0_ALL_c1_t69_r3_polyAla/unmod/mr/phaser/phaser_loc0_ALL_c1_t69_r3_polyAla_UNMOD.log')
          
  if __name__ == "__main__":
      unittest.main()
  
new_contents: """Test functions for util.ample_util"""
  
  import cPickle
  import os
  import unittest
  from ample.util import ample_util
  from ample.constants import AMPLE_PKL, SHARE_DIR
  
  class Test(unittest.TestCase):
  
      def test_find_exe(self):
          gesamt_exe = os.path.basename(ample_util.find_exe("gesamt" + ample_util.EXE_EXT))
          self.assertTrue("gesamt.exe", gesamt_exe)
          spicker_exe = os.path.basename(ample_util.find_exe("spicker" + ample_util.EXE_EXT))
          self.assertTrue("spicker.exe", spicker_exe)
          theseus_exe = os.path.basename(ample_util.find_exe("theseus" + ample_util.EXE_EXT))
          self.assertTrue("theseus", theseus_exe)
  
      def test_resultsd_fix_path(self):
          with open(os.path.join(SHARE_DIR,'testfiles', AMPLE_PKL)) as f: optd = cPickle.load(f)
          d = ample_util.amoptd_fix_path(optd, newroot='/foo/bar')
          self.assertEqual(d['fasta'],'/foo/bar/ampl_.fasta')
          self.assertEqual(d['mrbump_results'][0]['PHASER_logfile'],'/foo/bar/MRBUMP/search_c1_t69_r3_polyAla_mrbump/data/loc0_ALL_c1_t69_r3_polyAla/unmod/mr/phaser/phaser_loc0_ALL_c1_t69_r3_polyAla_UNMOD.log')
          
  if __name__ == "__main__":
      unittest.main()
  
subject: Fix failing test