old_contents: """
  Setup script for py2app deployment.
  
  Usage:
      python setup.py py2app
  """
  
  from setuptools import setup
  
  APP = ['source/main.py']
  DATA_FILES = []
  PACKAGES = [
  	'sip', 
  	'PyQt4._qt', 
  	're', 
  	'os', 
  	'itertools', 
  	'ete3', 
  	'copy', 
  	'subprocess', 
  	'collections', 
  	'scipy', 
  	'natsort', 
  	'functools', 
  	'webbrowser', 
  	'os', 
  	'matplotlib', 
  	'cStringIO', 
  	'numpy', 
  	'math', 
  	'random', 
  	'shutil', 
  	'dendropy', 
  	'PIL', 
  	'reportlab',
      'reportlab.lib',
      'reportlab.lib.colors',
      'reportlab.platypus',
      'biopython'
   ]
  OPTIONS = {
  	'iconfile': '/Users/Peter/PycharmProjects/ALPHA/browser.icns', 
  	'argv_emulation': True, 
  	'includes': PACKAGES
  }
  
  setup(
      app=APP,
      data_files=DATA_FILES,
      options={'py2app': OPTIONS},
      setup_requires=['py2app'],
  )
  
new_contents: """
  This is a setup.py script generated by py2applet
  
  Usage:
      python setup.py py2app
  """
  
  from setuptools import setup
  
  APP = ['source/main.py']
  DATA_FILES = []
  PACKAGES = [
  	'sip', 
  	'PyQt4._qt', 
  	're', 
  	'os', 
  	'itertools', 
  	'ete3', 
  	'copy', 
  	'subprocess', 
  	'collections', 
  	'scipy', 
  	'natsort', 
  	'functools', 
  	'webbrowser', 
  	'os', 
  	'matplotlib', 
  	'cStringIO', 
  	'numpy', 
  	'math', 
  	'random', 
  	'shutil', 
  	'dendropy', 
  	'PIL', 
  	'reportlab',
      'reportlab.lib',
      'reportlab.lib.colors',
      'reportlab.platypus',
      'biopython'
   ]
  OPTIONS = {
  	'iconfile': '/Users/Peter/PycharmProjects/ALPHA/browser.icns', 
  	'argv_emulation': True, 
  	'includes': PACKAGES
  }
  
  setup(
      app=APP,
      data_files=DATA_FILES,
      options={'py2app': OPTIONS},
      setup_requires=['py2app'],
  )
  
subject: Revert "setup"