old_contents: #!/usr/bin/env python
  #
  # -----------------------------------------------------------------------------
  # Copyright (c) 2015   Daniel Standage <daniel.standage@gmail.com>
  # Copyright (c) 2015   Indiana University
  #
  # This file is part of genhub (http://github.com/standage/genhub) and is
  # licensed under the BSD 3-clause license: see LICENSE.txt.
  # -----------------------------------------------------------------------------
  
  """Setup configuration for genhub"""
  
  import setuptools
  import versioneer
  
  
  setuptools.setup(name='genhub',
                   version=versioneer.get_version(),
                   cmdclass=versioneer.get_cmdclass(),
                   description=('Collect and pre-process annotated genome '
                                'assemblies'),
                   url='http://github.com/standage/genhub',
                   author='Daniel Standage',
                   author_email='daniel.standage@gmail.com',
                   license='BSD-3',
                   packages=['genhub'],
                   scripts=['scripts/genhub-build.py',
                            'scripts/genhub-filens.py',
                            'scripts/genhub-fix-trna.py',
                            'scripts/genhub-format-gff3.py',
                            'scripts/genhub-namedup.py',
                            'scripts/genhub-stats.py'],
                   zip_safe=False)
  
new_contents: #!/usr/bin/env python
  #
  # -----------------------------------------------------------------------------
  # Copyright (c) 2015   Daniel Standage <daniel.standage@gmail.com>
  # Copyright (c) 2015   Indiana University
  #
  # This file is part of genhub (http://github.com/standage/genhub) and is
  # licensed under the BSD 3-clause license: see LICENSE.txt.
  # -----------------------------------------------------------------------------
  
  """Setup configuration for genhub"""
  
  import setuptools
  import versioneer
  
  
  setuptools.setup(name='genhub',
                   version=versioneer.get_version(),
                   cmdclass=versioneer.get_cmdclass(),
                   description=('Collect and pre-process annotated genome '
                                'assemblies'),
                   url='http://github.com/standage/genhub',
                   author='Daniel Standage',
                   author_email='daniel.standage@gmail.com',
                   license='BSD-3',
                   packages=['genhub'],
                   scripts=['scripts/genhub-build.py',
                            'scripts/genhub-filens.py',
                            'scripts/genhub-fix-trna.py',
                            'scripts/genhub-format-gff3.py',
                            'scripts/genhub-namedup.py',
                            'scripts/genhub-stats.py'],
                   package_data={'genhub': ['../conf/*.yml',
                                            '../conf/*/*.yml']},
                   zip_safe=False)
  
subject: Include genome config data files in setup.py install