old_contents: import os
  
  from setuptools import setup, find_packages
  
  
  
  setup(
  	name='rose2',
  	version='1.0.0',
  	description='ROSE2 python package',
  	long_description='PROGRAM TO STITCH TOGETHER REGIONS TO FORM ENHANCERS, MAP READ DENSITY TO STITCHED REGIONS,AND RANK ENHANCERS BY READ DENSITY TO DISCOVER SUPER-ENHANCERS',
  	url='https://github.com/linlabbcm/rose2',
  	download_url = 'https://github.com/linlabbcm/rose2/tarball/v1.0.0',
  	
  
  	classifiers=[],
  
  	keywords=['bioinformatics','super-enhancers'],
  
  	packages=find_packages(),
  	package_data={
  		'rose2': ['annotation/*'],
  	},
  
  	install_requires=['numpy>=1.8.2'],
  	extras_require={},
  
  	scripts=['scripts/ROSE2_callSuper.R', 'scripts/ROSE2_stitchOpt.R'],
  
  	entry_points={
  	    'console_scripts': [
  	        'rose2=rose2:main',
  	        ]
  	    },
  
  )
new_contents: import os
  
  from setuptools import setup, find_packages
  
  
  
  setup(
  	name='rose2',
  	version='1.1.0',
  	description='ROSE2 python package',
  	long_description='PROGRAM TO STITCH TOGETHER REGIONS TO FORM ENHANCERS, MAP READ DENSITY TO STITCHED REGIONS,AND RANK ENHANCERS BY READ DENSITY TO DISCOVER SUPER-ENHANCERS',
  	url='https://github.com/linlabbcm/rose2',
  	download_url = 'https://github.com/linlabbcm/rose2/tarball/v1.1.0',
  	
  
  	classifiers=[],
  
  	keywords=['bioinformatics','super-enhancers'],
  
  	packages=find_packages(),
  	package_data={
  		'rose2': ['annotation/*'],
  	},
  
  	install_requires=['numpy>=1.8.2'],
  	extras_require={},
  
  	scripts=['scripts/ROSE2_callSuper.R', 'scripts/ROSE2_stitchOpt.R'],
  
  	entry_points={
  	    'console_scripts': [
  	        'rose2=rose2:main',
  	        ]
  	    },
  
  )
subject: Bump version to 1.1.0