old_contents: import setuptools
  
  setuptools.setup(
      name = "koeken",
      version = "0.2.0",
      url = "[https://github.com/twbattaglia/koeken",
  
      author = "Thomas W. Battaglia",
      author_email = "tb1280@nyu.edu",
  
      description = "Linear Discriminant Analysis (LEfSe) on A Longitudinal Microbial Dataset.",
      long_description = open('README.rst').read(),
      keywords = "Biology Microbiome LEFSE QIIME Formatting Diversity Python Bioinformatics",
  
  
      scripts = ['koeken/koeken.py', 'koeken/lefse_src/format_input.py', 'koeken/lefse_src/run_lefse.py', 'koeken/lefse_src/lefse.py'],
  
      entry_points={
          'console_scripts':
              ['koeken = koeken.koeken:main']
          }
  
  
      packages=setuptools.find_packages(),
  
      install_requires = ['rpy2', 'numpy', 'matplotlib', 'argparse', 'pandas', 'biopython', 'qiime'],
  
      classifiers = [
          'Development Status :: 2 - Pre-Alpha',
          'Programming Language :: Python',
          'Programming Language :: Python :: 2',
          'Programming Language :: Python :: 2.7',
          'Programming Language :: Python :: 3',
          'Programming Language :: Python :: 3.4',
      ],
  )
  
new_contents: import setuptools
  
  setuptools.setup(
      name = "koeken",
      version = "0.2.0",
      url = "[https://github.com/twbattaglia/koeken",
  
      author = "Thomas W. Battaglia",
      author_email = "tb1280@nyu.edu",
  
      description = "Linear Discriminant Analysis (LEfSe) on A Longitudinal Microbial Dataset.",
      long_description = open('README.rst').read(),
      keywords = "Biology Microbiome LEFSE QIIME Formatting Diversity Python Bioinformatics",
  
  
      scripts = ['koeken/koeken.py', 'koeken/lefse_src/format_input.py', 'koeken/lefse_src/run_lefse.py', 'koeken/lefse_src/lefse.py'],
  
      entry_points={
          'console_scripts':
              ['koeken = koeken.koeken:main']
          },
  
  
      packages=setuptools.find_packages(),
  
      install_requires = ['rpy2', 'numpy', 'matplotlib', 'argparse', 'pandas', 'biopython', 'qiime'],
  
      classifiers = [
          'Development Status :: 2 - Pre-Alpha',
          'Programming Language :: Python',
          'Programming Language :: Python :: 2',
          'Programming Language :: Python :: 2.7',
          'Programming Language :: Python :: 3',
          'Programming Language :: Python :: 3.4',
      ],
  )
  
subject: update setup.py