old_contents: from __future__ import print_function
  from setuptools import setup, find_packages
  from codecs import open
  from os import path
  import versioneer
  
  __version__ = '0.0.1'
  
  here = path.abspath(path.dirname(__file__))
  
  # Get the long description from the README file
  with open(path.join(here, 'README.md'), encoding='utf-8') as f:
      long_description = f.read()
  
  # get the dependencies and installs
  with open(path.join(here, 'requirements.txt'), encoding='utf-8') as f:
      all_reqs = f.read().split('\n')
  
  install_requires = [x.strip() for x in all_reqs if 'git+' not in x]
  dependency_links = [x.strip().replace('git+','') for x in all_reqs if 'git+' in x]
  
  setup(
      name='survivalstan',
      version=versioneer.get_version(),
      cmdclass=versioneer.get_cmdclass(),
      description='Library of Stan Models for Computational Biology',
      long_description=long_description,
      url='https://github.com/jburos/survivalstan',
      download_url='https://github.com/jburos/survivalstan/tarball/' + versioneer.get_version(),
      license="http://www.apache.org/licenses/LICENSE-2.0.html",
      classifiers=[
          "Development Status :: 3 - Alpha",
          "Environment :: Console",
          "Operating System :: OS Independent",
          "Intended Audience :: Science/Research",
          "License :: OSI Approved :: Apache Software License",
          "Programming Language :: Python",
          "Topic :: Scientific/Engineering :: Bio-Informatics",
      ],
      keywords='',
      packages=find_packages(exclude=['docs', 'test*']),
      include_package_data=True,
      author='Jacki Novik',
      install_requires=install_requires,
      dependency_links=dependency_links,
      author_email='jackinovik@gmail.com'
  )
  
new_contents: from __future__ import print_function
  from setuptools import setup, find_packages
  from codecs import open
  from os import path
  import versioneer
  
  __version__ = '0.0.1'
  
  here = path.abspath(path.dirname(__file__))
  
  # Get the long description from the README file
  with open(path.join(here, 'README.md'), encoding='utf-8') as f:
      long_description = f.read()
  
  # get the dependencies and installs
  with open(path.join(here, 'requirements.txt'), encoding='utf-8') as f:
      all_reqs = f.read().split('\n')
  
  install_requires = [x.strip() for x in all_reqs if 'git+' not in x]
  dependency_links = [x.strip().replace('git+','') for x in all_reqs if 'git+' in x]
  
  setup(
      name='survivalstan',
      version=versioneer.get_version(),
      cmdclass=versioneer.get_cmdclass(),
      description='Library of Stan Models for Survival Analysis',
      long_description=long_description,
      url='https://github.com/hammerlab/survivalstan',
      download_url='https://github.com/hammerlab/survivalstan/tarball/' + versioneer.get_version(),
      license="http://www.apache.org/licenses/LICENSE-2.0.html",
      classifiers=[
          "Development Status :: 3 - Alpha",
          "Environment :: Console",
          "Operating System :: OS Independent",
          "Intended Audience :: Science/Research",
          "License :: OSI Approved :: Apache Software License",
          "Programming Language :: Python",
          "Topic :: Scientific/Engineering :: Bio-Informatics",
      ],
      keywords='',
      packages=find_packages(exclude=['docs', 'test*']),
      include_package_data=True,
      author='Jacki Novik',
      install_requires=install_requires,
      dependency_links=dependency_links,
      author_email='jackinovik@gmail.com'
  )
  
subject: edit repo location