new_contents: import os,sys
  #import ez_setup
  #ez_setup.use_setuptools()
  
  from setuptools import setup, find_packages
  
  import numpy
  from Cython.Build import cythonize
  # not compatible with distribute
  #from distutils.extension import Extension
  #from Cython.Distutils import build_ext
  
  version = '0.2.2'
  
  README = os.path.join(os.path.dirname(__file__), 'README')
  long_description = open(README).read() + '\n\n'
  
  classifiers = """\
  Development Status :: 4 - Beta
  Environment :: Console
  Intended Audience :: Science/Research
  License :: OSI Approved :: MIT License
  Topic :: Scientific/Engineering :: Bio-Informatics
  Programming Language :: Python
  Operating System :: Unix
  """
  
  entry_points = """
  [console_scripts]
  seqview = seqtool.command:seqview
  get_genbank = seqtool.command:get_genbank
  geneview = seqtool.command:geneview
  tssview = seqtool.command:tssview
  primers = seqtool.command:primers
  seqvcmd = seqtool.seqvcmd:main
  convert_bs = seqtool.bowtie.convert_bs:main
  virtualpcr = seqtool.bowtie.virtualpcr:main
  bisulfite = seqtool.script.bisulfite:main
  rpm = seqtool.script.cf:main
  align = seqtool.script.align:main
  translate = seqtool.script.translate:main
  sequencing = seqtool.command:sequencing
  server = seqtool.server.server:main
  seqdb = seqtool.db.sql:database_command
  """
  setup(
      name='seqtool',
      version=version,
      description=("small scripts visualizing PCR products for molecular biology experimetnts."),
      classifiers = filter(None, classifiers.split("\n")),
      keywords='pcr biology bisulfite',
      author='mizuy',
      author_email='mizugy@gmail.com',
      url='http://github.com/mizuy/seqtool',
      license='MIT',
      packages=find_packages(),
      install_requires=['biopython','numpy', 'sqlalchemy', 'cython'],
      test_suite='nose.collector',
      ext_modules = cythonize('seqtool/nucleotide/sw_c.pyx'),
      include_dirs = [numpy.get_include()],
      entry_points=entry_points
  )
  
subject: add missing setup.py