old_contents: #!/usr/bin/env python3
  
  from setuptools import setup, find_packages, Extension
  from Cython.Distutils import build_ext
  import os
  
  pccup = Extension(
      'PCCUP',
      sources=['PCCUP.pyx']
  )
  refgendist = Extension(
      'RefGenDist',
      sources=['RefGenDist.pyx']
  )
  
  setup(
      name = 'camoco',
      version = '0.1.8',
      packages = find_packages(),
      scripts = [
          'bin/BootstrapLocality.py',
          'interfaces/CamocoWeb.py'
      ],
      ext_modules = [pccup,refgendist],
      cmdclass = {'build_ext': build_ext},
  
      install_requires = [
          'cython>=0.16',    
          'igraph>=0.1.5',
          'matplotlib>=1.4.3',
          'numpy>=1.9.1',
          'pandas>=0.16',
          'scipy>=0.15',
          'termcolor>=1.1.0'
      ],
  
      package_data = {
          '':['*.cyx']    
      },
      include_package_data=True,
  
      author = 'Rob Schaefer',
      author_email = 'schae234@gmail.com',
      description = 'Library for Co-Analysis of Molecular Componenets.',
      license = "Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License",
      url = 'https://github.com/schae234/camoco'
  )
  
new_contents: #!/usr/bin/env python3
  
  from setuptools import setup, find_packages, Extension
  from Cython.Distutils import build_ext
  import os
  
  pccup = Extension(
      'PCCUP',
      sources=['camoco/PCCUP.pyx']
  )
  refgendist = Extension(
      'RefGenDist',
      sources=['camoco/RefGenDist.pyx']
  )
  
  setup(
      name = 'camoco',
      version = '0.1.8',
      packages = find_packages(),
      scripts = [
          'bin/BootstrapLocality.py',
          'interfaces/CamocoWeb.py'
      ],
      ext_modules = [pccup,refgendist],
      cmdclass = {'build_ext': build_ext},
  
      install_requires = [
          'cython>=0.16',    
          'igraph>=0.1.5',
          'matplotlib>=1.4.3',
          'numpy>=1.9.1',
          'pandas>=0.16',
          'scipy>=0.15',
          'termcolor>=1.1.0'
      ],
  
      package_data = {
          '':['*.cyx']    
      },
      include_package_data=True,
  
      author = 'Rob Schaefer',
      author_email = 'schae234@gmail.com',
      description = 'Library for Co-Analysis of Molecular Componenets.',
      license = "Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License",
      url = 'https://github.com/schae234/camoco'
  )
  
subject: Fix broken paths