old_contents: """
  Copyright [2009-2014] EMBL-European Bioinformatics Institute
  Licensed under the Apache License, Version 2.0 (the "License");
  you may not use this file except in compliance with the License.
  You may obtain a copy of the License at
       http://www.apache.org/licenses/LICENSE-2.0
  Unless required by applicable law or agreed to in writing, software
  distributed under the License is distributed on an "AS IS" BASIS,
  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
  See the License for the specific language governing permissions and
  limitations under the License.
  """
  
  # minimum query sequence length
  MIN_LENGTH = 11
  
  # maximum query sequence length
  MAX_LENGTH = 1000
  
  # Redis results expiration time
  EXPIRATION = 60*60*24*7 # seconds
  
  # maximum time to run nhmmer
  MAX_RUN_TIME = 60*60 # seconds
  
  # full path to query files
  QUERY_DIR = ''
  
  # full path to results files
  RESULTS_DIR = ''
  
  # full path to nhmmer executable
  NHMMER_EXECUTABLE = ''
  
  # full path to sequence database
  SEQDATABASE = ''
  
new_contents: """
  Copyright [2009-2014] EMBL-European Bioinformatics Institute
  Licensed under the Apache License, Version 2.0 (the "License");
  you may not use this file except in compliance with the License.
  You may obtain a copy of the License at
       http://www.apache.org/licenses/LICENSE-2.0
  Unless required by applicable law or agreed to in writing, software
  distributed under the License is distributed on an "AS IS" BASIS,
  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
  See the License for the specific language governing permissions and
  limitations under the License.
  """
  
  # minimum query sequence length
  MIN_LENGTH = 11
  
  # maximum query sequence length
  MAX_LENGTH = 10000
  
  # Redis results expiration time
  EXPIRATION = 60*60*24*7 # seconds
  
  # maximum time to run nhmmer
  MAX_RUN_TIME = 60*60 # seconds
  
  # full path to query files
  QUERY_DIR = ''
  
  # full path to results files
  RESULTS_DIR = ''
  
  # full path to nhmmer executable
  NHMMER_EXECUTABLE = ''
  
  # full path to sequence database
  SEQDATABASE = ''
  
subject: Increase maximum query length to 10K