old_contents: #!/usr/bin/env python2
  
  from setuptools import setup, find_packages
  
  # Uploading to PyPI
  # =================
  # The first time only:
  # $ python setup.py register -r pypi
  #
  # Every version bump:
  # $ git tag <version>; git push --tags
  # $ python setup.py sdist upload -r pypi
  
  version = '0.4.0'
  setup(
      name='klab',
      version=version,
      author='Kortemme Lab, UCSF',
      author_email='support@kortemmelab.ucsf.edu',
      url='https://github.com/Kortemme-Lab/klab',
      download_url='https://github.com/Kortemme-Lab/klab/tarball/'+version,
      license='MIT',
      description="A collection of utilities used by our lab for computational biophysics",
      long_description=open('README.rst').read(),
      keywords=['utilities', 'library', 'biophysics'],
      classifiers=[
          "Intended Audience :: Science/Research",
          "Topic :: Scientific/Engineering :: Bio-Informatics",
          "Development Status :: 3 - Alpha",
          'Programming Language :: Python :: 2',
      ],
      packages=find_packages(),
      package_data={
          'klab.bio.fragments': [
              'make_fragments_RAP_cluster.pl',
  
          ],
      },
      install_requires=[],
      entry_points={
          'console_scripts': [
              'klab_generate_fragments=klab.bio.fragments.generate_fragments:main',
          ],
      },
  )
  
new_contents: #!/usr/bin/env python2
  
  from setuptools import setup, find_packages
  
  # Uploading to PyPI
  # =================
  # The first time only:
  # $ python setup.py register -r pypi
  #
  # Every version bump:
  # $ git tag <version>; git push --tags
  # $ python setup.py sdist upload -r pypi
  
  version = '0.4.0'
  setup(
      name='klab',
      version=version,
      author='Kortemme Lab, UCSF',
      author_email='support@kortemmelab.ucsf.edu',
      url='https://github.com/Kortemme-Lab/klab',
      download_url='https://github.com/Kortemme-Lab/klab/tarball/'+version,
      license='MIT',
      description="A collection of utilities used by our lab for computational biophysics",
      long_description=open('README.rst').read(),
      keywords=['utilities', 'library', 'biophysics'],
      classifiers=[
          "Intended Audience :: Science/Research",
          "Topic :: Scientific/Engineering :: Bio-Informatics",
          "Development Status :: 3 - Alpha",
          'Programming Language :: Python :: 2',
      ],
      packages=find_packages(),
      package_data={
          'klab.bio.fragments': [
              'make_fragments_QB3_cluster.pl',
          ],
      },
      install_requires=[],
      entry_points={
          'console_scripts': [
              'klab_generate_fragments=klab.bio.fragments.generate_fragments:main',
          ],
      },
  )
  
subject: Fix the make_fragments_QB3_cluster.pl install path.