old_contents: from setuptools import setup, find_packages
  
  
  config = {
      'name':'pylogenetics',
      'description': 'Phylogenetic analysis tools',
      'author': 'Dominic White',
      'url': 'https://github.com/dominicwhite/pylogenetics',
      'download_url': 'https://pypi.python.org/pypi/pylogenetics/',
      'author_email': 'dewhite4@gmail.com',
      'version': '0.3.5',
      'install_requires': ['nose','networkx','requests'],
      'packages': ['pylogenetics'],
      'scripts': [],
      'classifiers': [
          "Programming Language :: Python",
          "Programming Language :: Python :: 2.7",
          "Development Status :: 3 - Alpha",
          "Intended Audience :: Science/Research",
          "License :: OSI Approved :: MIT License",
          "Topic :: Scientific/Engineering :: Bio-Informatics",
          "Operating System :: OS Independent"
          ]
  }
  
  setup(**config)
  
new_contents: from setuptools import setup, find_packages
  
  with open("README.md", "r") as fh:
      long_description = fh.read()
  
  v='0.4.0'
  
  config = {
      'name':'pylogenetics',
      'description': 'Phylogenetic analysis tools',
      'author': 'Dominic White',
      'url': 'https://github.com/dominicwhite/pylogenetics',
      'author_email': 'dewhite4@gmail.com',
      'version': v,
      'install_requires': ['nose','networkx','numpy','requests'],
      'long_description': long_description,
      'long_description_content_type': "text/markdown",
      'packages': ['pylogenetics'],
      'scripts': [],
      'classifiers': [
          "Programming Language :: Python",
          "Programming Language :: Python :: 2.7",
          "Development Status :: 3 - Alpha",
          "Intended Audience :: Science/Research",
          "License :: OSI Approved :: MIT License",
          "Topic :: Scientific/Engineering :: Bio-Informatics",
          "Operating System :: OS Independent"
          ]
  }
  
  setup(**config)
  
subject: Update setup.py