old_contents: """
  Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
  Copyright [2016-2020] EMBL-European Bioinformatics Institute
  
  Licensed under the Apache License, Version 2.0 (the "License");
  you may not use this file except in compliance with the License.
  You may obtain a copy of the License at
  
      http://www.apache.org/licenses/LICENSE-2.0
  
  Unless required by applicable law or agreed to in writing, software
  distributed under the License is distributed on an "AS IS" BASIS,
  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
  See the License for the specific language governing permissions and
  limitations under the License.
  """
  
  from pathlib import Path
  
  from setuptools import setup, find_packages
  
  
  with open(Path(__file__).parent / 'README.md') as f:
      readme = f.read()
  
  with open(Path(__file__).parent / 'LICENSE') as f:
      license_ct = f.read()
  
  with open(Path(__file__).parent / 'PIP_VERSION') as f:
      version = f.read()
  
  
  def import_requirements():
      """Import ``requirements.txt`` file located at the root of the repository."""
      with open(Path(__file__).parent / 'requirements.txt') as file:
          return [line.rstrip() for line in file.readlines()]
  
  
  setup(
      name='ensembl-compara',
      version=version,
      description="Ensembl Compara's Python library",
      long_description=readme,
      author='Ensembl Compara',
      author_email='dev@ensembl.org',
      url='https://www.ensembl.org',
      download_url='https://github.com/Ensembl/ensembl-compara',
      license=license_ct,
      packages=find_packages(where='src/ptyhon', exclude=('tests')),
      install_requires=import_requirements(),
      classifiers=[
          "Development Status :: 3 - Alpha",
          "Environment :: Console",
          "Intended Audience :: Science/Research",
          "License :: OSI Approved :: Apache Software License",
          "Natural Language :: English",
          "Programming Language :: Python :: 3.6",
          "Topic :: Scientific/Engineering :: Bio-Informatics",
          "Topic :: Software Development :: Libraries :: Python Modules",
      ]
  )
  
new_contents: """
  Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
  Copyright [2016-2020] EMBL-European Bioinformatics Institute
  
  Licensed under the Apache License, Version 2.0 (the "License");
  you may not use this file except in compliance with the License.
  You may obtain a copy of the License at
  
      http://www.apache.org/licenses/LICENSE-2.0
  
  Unless required by applicable law or agreed to in writing, software
  distributed under the License is distributed on an "AS IS" BASIS,
  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
  See the License for the specific language governing permissions and
  limitations under the License.
  """
  
  from pathlib import Path
  
  from setuptools import setup, find_namespace_packages
  
  
  with open(Path(__file__).parent / 'README.md') as f:
      readme = f.read()
  
  with open(Path(__file__).parent / 'LICENSE') as f:
      license_ct = f.read()
  
  with open(Path(__file__).parent / 'PIP_VERSION') as f:
      version = f.read()
  
  
  def import_requirements():
      """Import ``requirements.txt`` file located at the root of the repository."""
      with open(Path(__file__).parent / 'requirements.txt') as file:
          return [line.rstrip() for line in file.readlines()]
  
  
  setup(
      name='ensembl-compara',
      version=version,
      description="Ensembl Compara's Python library",
      long_description=readme,
      author='Ensembl Compara',
      author_email='dev@ensembl.org',
      url='https://www.ensembl.org',
      download_url='https://github.com/Ensembl/ensembl-compara',
      license=license_ct,
      package_dir={"": "src/python/lib"},
      packages=find_namespace_packages(where='lib'),
      install_requires=import_requirements(),
      classifiers=[
          "Development Status :: 3 - Alpha",
          "Environment :: Console",
          "Intended Audience :: Science/Research",
          "License :: OSI Approved :: Apache Software License",
          "Natural Language :: English",
          "Programming Language :: Python :: 3.6",
          "Topic :: Scientific/Engineering :: Bio-Informatics",
          "Topic :: Software Development :: Libraries :: Python Modules",
      ]
  )
  
subject: install namespace package