old_contents: """
  setup.py
  ~~~~~~~~~~~~~
  
  
  :copyright: (c) 2016 Sander Bollen
  :copyright: (c) 2016 Leiden University Medical Center
  :license: MIT
  """
  from os.path import abspath, dirname, join
  
  from setuptools import setup
  
  readme_file = join(abspath(dirname(__file__)), "README.md")
  with open(readme_file) as desc_handle:
      long_desc = desc_handle.read()
  
  setup(
      name="gvcf2bed",
      version="0.2",
      description="Convert gVCF into BED",
      long_description=long_desc,
      author="Sander Bollen",
      author_email="a.h.b.bollen@lumc.nl",
      url="https://github.com/sndrtj/gvcf2bed",
      license="MIT",
      packages=["gvcf2bed"],
      install_requires=["pyvcf==0.6.8"],
      test_requires=["pytest", "pytest-cov"],
      entry_points={
          "console_scripts": [
              "gvcf2bed = gvcf2bed.gvcf2bed:main"
          ]
      },
      classifiers=[
          "Topic :: Scientific/Engineering :: Bio-Informatics"
      ]
  
  )
  
new_contents: """
  setup.py
  ~~~~~~~~~~~~~
  
  
  :copyright: (c) 2016 Sander Bollen
  :copyright: (c) 2016 Leiden University Medical Center
  :license: MIT
  """
  from os.path import abspath, dirname, join
  
  from setuptools import setup
  
  readme_file = join(abspath(dirname(__file__)), "README.md")
  with open(readme_file) as desc_handle:
      long_desc = desc_handle.read()
  
  setup(
      name="gvcf2bed",
      version="0.2",
      description="Convert gVCF into BED",
      long_description=long_desc,
      author="Sander Bollen",
      author_email="a.h.b.bollen@lumc.nl",
      url="https://github.com/sndrtj/gvcf2bed",
      license="MIT",
      packages=["gvcf2bed"],
      install_requires=["pyvcf==0.6.8", "cyvcf2>=0.7.4"],
      test_requires=["pytest", "pytest-cov"],
      entry_points={
          "console_scripts": [
              "gvcf2bed = gvcf2bed.gvcf2bed:main"
          ]
      },
      classifiers=[
          "Topic :: Scientific/Engineering :: Bio-Informatics"
      ]
  
  )
  
subject: add cyvcf2 to setup.py