old_contents: from setuptools import setup
  from os import path
  
  # Get the long description from the README file
  here = path.abspath(path.dirname(__file__))
  with open(path.join(here, 'README.rst'), encoding='utf-8') as f:
      long_description = f.read()
  
  setup(
      name='CAI',
      packages=["CAI"],
      version='1.0.2',
      description='Python implementation of codon adaptation index',
      long_description=long_description,
      author='Benjamin Lee',
      author_email='benjamin_lee@college.harvard.edu',
      url='https://github.com/Benjamin-Lee/CodonAdaptationIndex', # use the URL to the github repo
      classifiers=["Intended Audience :: Science/Research",
                   "Topic :: Scientific/Engineering :: Bio-Informatics",
                   "Programming Language :: Python"],
      install_requires=['scipy', 'biopython', 'click>=7'],
      tests_require=["pytest"],
      setup_requires=['pytest-runner'],
      license="MIT",
      use_2to3=True,
      python_requires='>=3.4',
      entry_points={'console_scripts': ['CAI=CAI.cli:cli']},
  )
  
new_contents: from setuptools import setup
  from os import path
  
  # Get the long description from the README file
  here = path.abspath(path.dirname(__file__))
  with open(path.join(here, 'README.rst'), encoding='utf-8') as f:
      long_description = f.read()
  
  setup(
      name='CAI',
      packages=["CAI"],
      version='1.0.3',
      description='Python implementation of codon adaptation index',
      long_description=long_description,
      author='Benjamin Lee',
      author_email='benjamin_lee@college.harvard.edu',
      url='https://github.com/Benjamin-Lee/CodonAdaptationIndex', # use the URL to the github repo
      classifiers=["Intended Audience :: Science/Research",
                   "Topic :: Scientific/Engineering :: Bio-Informatics",
                   "Programming Language :: Python"],
      install_requires=['scipy', 'biopython', 'click>=7'],
      tests_require=["pytest"],
      setup_requires=['pytest-runner'],
      license="MIT",
      use_2to3=True,
      python_requires='>=3.4',
      entry_points={'console_scripts': ['CAI=CAI.cli:cli']},
  )
  
subject: Bump version