old_contents: """
  This is the setup script.
  This script is automatically run by
  easy_install or by pip on the user's machine when
  she installs the module from pypi.
  
  Here is some documentation for this process.
  http://docs.python.org/extending/building.html
  
  More info:
  http://wiki.python.org/moin/Distutils/Tutorial
  
  Register the metadata with pypi as follows:
  python setup.py register
  
  Send to pypi as follows:
  python setup.py sdist upload --show-response
  """
  
  from distutils.core import setup
  from distutils.core import Extension
  
  hummusc = Extension(
          name='hmmusc',
          sources=['hmmuscmodule.c', 'hmmguts/hmmguts.c'])
  
  classifiers = [
          'Development Status :: 2 - Pre-Alpha',
          'Environment :: Console',
          'Intended Audience :: Developers',
          'Intended Audience :: Science/Research',
          'License :: OSI Approved :: MIT License',
          'Natural Language :: English',
          'Operating System :: POSIX :: Linux',
          'Programming Language :: Python :: 2.6',
          'Programming Language :: C',
          'Programming Language :: Unix Shell',
          'Topic :: Scientific/Engineering :: Bio-Informatics',
          'Topic :: Scientific/Engineering :: Artificial Intelligence',
          'Topic :: Scientific/Engineering :: Information Analysis']
  
  scripts = [
          'bin/create-example-likelihoods-a.py',
          'bin/create-example-likelihoods-b.py',
          'bin/create-example-likelihoods-c.py',
          'bin/view-matrix.py']
  
  setup(
          name = 'hmmus',
          version = '0.1.1',
          author = 'Alex Griffing',
          author_email = 'argriffi@ncsu.edu',
          maintainer = 'Alex Griffing',
          maintainer_email = 'argriffi@ncsu.edu',
          url = 'http://github.com/argriffing/hmmus',
          description = 'Hidden Markov model stuff',
          classifiers = classifiers,
          platforms = ['linux'],
          license = 'http://www.opensource.org/licenses/mit-license.html',
          ext_modules = [hummusc],
          packages = ['hmmus'],
          scripts = scripts)
  
new_contents: """
  This is the setup script.
  This script is automatically run by
  easy_install or by pip on the user's machine when
  she installs the module from pypi.
  
  Here is some documentation for this process.
  http://docs.python.org/extending/building.html
  
  More info:
  http://wiki.python.org/moin/Distutils/Tutorial
  
  Register the metadata with pypi as follows:
  python setup.py register
  
  Send to pypi as follows:
  python setup.py sdist upload --show-response
  """
  
  from distutils.core import setup
  from distutils.core import Extension
  
  hummusc = Extension(
          name='hmmusc',
          sources=['hmmuscmodule.c', 'hmmguts/hmmguts.c'])
  
  classifiers = [
          'Development Status :: 2 - Pre-Alpha',
          'Environment :: Console',
          'Intended Audience :: Developers',
          'Intended Audience :: Science/Research',
          'License :: OSI Approved :: MIT License',
          'Natural Language :: English',
          'Operating System :: POSIX :: Linux',
          'Programming Language :: Python :: 2.6',
          'Programming Language :: C',
          'Programming Language :: Unix Shell',
          'Topic :: Scientific/Engineering :: Bio-Informatics',
          'Topic :: Scientific/Engineering :: Artificial Intelligence',
          'Topic :: Scientific/Engineering :: Information Analysis',
          'Topic :: Software Development :: Libraries :: Python Modules']
  
  scripts = [
          'bin/create-example-likelihoods-a.py',
          'bin/create-example-likelihoods-b.py',
          'bin/create-example-likelihoods-c.py',
          'bin/view-matrix.py']
  
  setup(
          name = 'hmmus',
          version = '0.1.3',
          author = 'Alex Griffing',
          author_email = 'argriffi@ncsu.edu',
          maintainer = 'Alex Griffing',
          maintainer_email = 'argriffi@ncsu.edu',
          url = 'http://github.com/argriffing/hmmus',
          description = 'Hidden Markov model stuff',
          long_description = open('README').read(),
          classifiers = classifiers,
          platforms = ['linux'],
          license = 'http://www.opensource.org/licenses/mit-license.html',
          ext_modules = [hummusc],
          packages = ['hmmus'],
          scripts = scripts)
  
subject: change pypi registration stuff