old_contents: MIRNAS_CSV = "rfam-production/mirnas_sample.csv"
  SEARCH_DIRS = ["/nfs/production/agb/rfam/RELEASES/14.3/miRNA_relabelled/batch1_chunk1_searches",
                 "/nfs/production/agb/rfam/RELEASES/14.3/miRNA_relabelled/batch1_chunk2_searches",
                 "/nfs/production/agb/rfam//RELEASES/14.3/miRNA_relabelled/batch2/searches",
                 "/nfs/production/agb/rfam/RELEASES/14.8/microrna/batch3_chunk1_searches"
                 "/nfs/production/agb/rfam/RELEASES/14.9/microrna/batch3_chunk2_searches",
                 "/nfs/production/agb/rfam/RELEASES/14.9/microrna/batch4_searches"]
  
  STK_DIRS = ["/nfs/production/agb/rfam/microrna/batch4"]
  # "/nfs/production/agb/rfam/microrna/batch3/fixed", "/nfs/production/agb/rfam/microrna/batch3/one_seed"
  
  COPY_DIR = "/nfs/production/agb/rfam/RELEASES/14.9/microrna/batch4_searches"
  
  UPDATE_DIR = "/nfs/production/agb/rfam/RELEASES/14.9/microrna/update_families"
  NEW_DIR = "/nfs/production/agb/rfam/RELEASES/14.9/microrna/new_families"
  ENV_PATH = "/nfs/production/agb/users/rfamprod/code/env2/bin/activate"
  DESC_GEN_PATH = "/nfs/production/agb/users/rfamprod/code/rfam-production/scripts/preprocessing/desc_generator.py"
  MEMORY = 8000
  CPU = 4
  LSF_GROUP = "/rfam_srch"
  QUEUE = "short"
new_contents: MIRNAS_CSV = "rfam-production/mirnas_sample.csv"
  SEARCH_DIRS = ["/nfs/production/agb/rfam/RELEASES/14.3/miRNA_relabelled/batch1_chunk1_searches",
                 "/nfs/production/agb/rfam/RELEASES/14.3/miRNA_relabelled/batch1_chunk2_searches",
                 "/nfs/production/agb/rfam//RELEASES/14.3/miRNA_relabelled/batch2/searches",
                 "/nfs/production/agb/rfam/RELEASES/14.8/microrna/batch3_chunk1_searches"
                 "/nfs/production/agb/rfam/RELEASES/14.9/microrna/batch3_chunk2_searches",
                 "/nfs/production/agb/rfam/RELEASES/14.9/microrna/batch4_searches"]
  STK_DIRS = ["/nfs/production/agb/rfam/microrna/batch4"]
  # "/nfs/production/agb/rfam/microrna/batch3/fixed", "/nfs/production/agb/rfam/microrna/batch3/one_seed"
  COPY_DIR = "/nfs/production/agb/rfam/RELEASES/14.9/microrna/batch4_searches"
  UPDATE_DIR = "/nfs/production/agb/rfam/RELEASES/14.9/microrna/update_families"
  NEW_DIR = "/nfs/production/agb/rfam/RELEASES/14.9/microrna/new_families"
  MEMORY = 8000
  CPU = 4
  LSF_GROUP = "/rfam_srch"
  QUEUE = "short"
  
subject: remove unused vars from config