old_contents: from __future__ import absolute_import
  from multiqc import config
  
  # Add search patterns and config options for the things that are used in
  # MultiQC_sequana
  def multiqc_sequana_config():
      """ Set up MultiQC config defaults for this package """
      sequana_search_patterns = {
          'sequana/pacbio_qc': {
              'fn': 'summary_*.json'
          },
          'sequana/quality_control': {
              'fn': 'summary.json'
          },
          'sequana/coverage': {
              'fn': 'sequana_summary_coverage.json',
          },
      }
      config.update_dict(config.sp, sequana_search_patterns)
      #config.fn_clean_exts.append({'type': 'regex', 'pattern': 'summary_*.*'})
      config.update_dict(config.table_columns_visible, {
          'FastQC': {
              'percent_duplicates': False,
              'total_sequences': False,
          },
          'Samtools Stats': {
              'non-primary_alignments': False,
              'reads_mapped': False,
              'reads_mapped_percent': False,
              'raw_total_sequences': False,
          }
      })
  
      # config.log_filesize_limit =  500000
      # in sequana_coverage, large html files are created.
      # they can be ignored
      config.fn_ignore_files = ['*html']
  
  
      #config.update_dict(config.log_filesize_limit, 500000)
  
new_contents: from __future__ import absolute_import
  from multiqc import config
  
  # Add search patterns and config options for the things that are used in
  # MultiQC_sequana
  def multiqc_sequana_config():
      """ Set up MultiQC config defaults for this package """
      sequana_search_patterns = {
          'sequana/pacbio_qc': {
              'fn': 'summary_*.json'
          },
          'sequana/quality_control': {
              'fn': 'summary.json'
          },
          'sequana/coverage': {
              'fn': 'sequana_summary_coverage.json',
          },
          'sequana/isoseq': {
              'fn': 'sequana_summary_isoseq.json',
          },
      }
      config.update_dict(config.sp, sequana_search_patterns)
      #config.fn_clean_exts.append({'type': 'regex', 'pattern': 'summary_*.*'})
      config.update_dict(config.table_columns_visible, {
          'FastQC': {
              'percent_duplicates': False,
              'total_sequences': False,
          },
          'Samtools Stats': {
              'non-primary_alignments': False,
              'reads_mapped': False,
              'reads_mapped_percent': False,
              'raw_total_sequences': False,
          }
      })
  
      # config.log_filesize_limit =  500000
      # in sequana_coverage, large html files are created.
      # they can be ignored
      config.fn_ignore_files = ['*html']
  
  
      #config.update_dict(config.log_filesize_limit, 500000)
  
subject: add isoseq module