old_contents: from setuptools import setup, find_packages 
  from codecs import open
  from os import path
  
  here = path.abspath(path.dirname(__file__))
  
  # Get the long description from the relevant file
  with open(path.join(here, 'DESCRIPTION.rst'), encoding='utf-8') as f:
      long_description = f.read()
  
  setup(
      name='pyGeno',
  
      version='1.4.0',
  
      description='A python package for Personalized Genomics and Proteomics',
      long_description=long_description,
      
      url='http://pyGeno.iric.ca',
  
      author='Tariq Daouda',
      author_email='tariq.daouda@umontreal.ca',
  
      test_suite="pyGeno.tests", 
  	
      license='ApacheV2.0',
  
      # See https://pypi.python.org/pypi?%3Aaction=list_classifiers
      classifiers=[
          # How mature is this project? Common values are
          #   3 - Alpha
          #   4 - Beta
          #   5 - Production/Stable
          'Development Status :: 5 - Production/Stable',
  
          'Intended Audience :: Science/Research',
          'Intended Audience :: Healthcare Industry',
          'Topic :: Scientific/Engineering :: Bio-Informatics',
          'Topic :: Software Development :: Libraries',
          'Topic :: Software Development :: Libraries :: Application Frameworks',
  
          'License :: OSI Approved :: Apache Software License',
  
          'Programming Language :: Python :: 3.7',
      ],
  
      keywords='proteogenomics genomics proteomics annotations medicine research personalized gene sequence protein',
  
      packages=find_packages(exclude=[]),
  
      # List run-time dependencies here.  These will be installed by pip when your
      # project is installed. For an analysis of "install_requires" vs pip's
      # requirements files see:
      # https://packaging.python.org/en/latest/technical.html#install-requires-vs-requirements-files
      install_requires=['rabaDB >= 1.0.5'],
  
      # If there are data files included in your packages that need to be
      # installed, specify them here.  OBSOLETE [If using Python 2.6 or less, then these
      # have to be included in MANIFEST.in as well.]
      package_data={
          '': ['*.txt', '*.rst', '*.tar.gz'],
      },
  
      # Although 'package_data' is the preferred approach, in some case you may
      # need to place data files outside of your packages.
      # see http://docs.python.org/3.4/distutils/setupscript.html#installing-additional-files
      # In this case, 'data_file' will be installed into '<sys.prefix>/my_data'
      #~ data_files=[('my_data', ['data/data_file'])],
  
      # To provide executable scripts, use entry points in preference to the
      # "scripts" keyword. Entry points provide cross-platform support and allow
      # pip to create the appropriate form of executable for the target platform.
      entry_points={
          'console_scripts': [
              'sample=sample:main',
          ],
      },
  )
  
new_contents: from setuptools import setup, find_packages 
  from codecs import open
  from os import path
  
  here = path.abspath(path.dirname(__file__))
  
  # Get the long description from the relevant file
  with open(path.join(here, 'DESCRIPTION.rst'), encoding='utf-8') as f:
      long_description = f.read()
  
  setup(
      name='pyGeno',
  
      version='2.0.0',
  
      description='A python package for Personalized Genomics and Proteomics',
      long_description=long_description,
      
      url='http://pyGeno.iric.ca',
  
      author='Tariq Daouda',
      author_email='tariq.daouda@umontreal.ca',
  
      test_suite="pyGeno.tests", 
  	
      license='ApacheV2.0',
  
      # See https://pypi.python.org/pypi?%3Aaction=list_classifiers
      classifiers=[
          # How mature is this project? Common values are
          #   3 - Alpha
          #   4 - Beta
          #   5 - Production/Stable
          'Development Status :: 5 - Production/Stable',
  
          'Intended Audience :: Science/Research',
          'Intended Audience :: Healthcare Industry',
          'Topic :: Scientific/Engineering :: Bio-Informatics',
          'Topic :: Software Development :: Libraries',
          'Topic :: Software Development :: Libraries :: Application Frameworks',
  
          'License :: OSI Approved :: Apache Software License',
  
          'Programming Language :: Python :: 3.7',
      ],
  
      keywords='proteogenomics genomics proteomics annotations medicine research personalized gene sequence protein',
  
      packages=find_packages(exclude=[]),
  
      # List run-time dependencies here.  These will be installed by pip when your
      # project is installed. For an analysis of "install_requires" vs pip's
      # requirements files see:
      # https://packaging.python.org/en/latest/technical.html#install-requires-vs-requirements-files
      install_requires=['rabaDB >= 1.0.5'],
  
      # If there are data files included in your packages that need to be
      # installed, specify them here.  OBSOLETE [If using Python 2.6 or less, then these
      # have to be included in MANIFEST.in as well.]
      package_data={
          '': ['*.txt', '*.rst', '*.tar.gz'],
      },
  
      # Although 'package_data' is the preferred approach, in some case you may
      # need to place data files outside of your packages.
      # see http://docs.python.org/3.4/distutils/setupscript.html#installing-additional-files
      # In this case, 'data_file' will be installed into '<sys.prefix>/my_data'
      #~ data_files=[('my_data', ['data/data_file'])],
  
      # To provide executable scripts, use entry points in preference to the
      # "scripts" keyword. Entry points provide cross-platform support and allow
      # pip to create the appropriate form of executable for the target platform.
      entry_points={
          'console_scripts': [
              'sample=sample:main',
          ],
      },
  )
  
subject: Bump version to 2.0.0