old_contents: """
  .. Copyright 2017 EMBL-European Bioinformatics Institute
  
     Licensed under the Apache License, Version 2.0 (the "License");
     you may not use this file except in compliance with the License.
     You may obtain a copy of the License at
  
         http://www.apache.org/licenses/LICENSE-2.0
  
     Unless required by applicable law or agreed to in writing, software
     distributed under the License is distributed on an "AS IS" BASIS,
     WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
     See the License for the specific language governing permissions and
     limitations under the License.
  """
  
  import os.path
  import time
  import pytest # pylint: disable=unused-import
  
  from tool import biobambam_filter
  
  def test_biobambam():
      """
      Test case to ensure that BioBamBam works
      """
      bbb = biobambam_filter.biobambam()
      resource_path = os.path.join(os.path.dirname(__file__), "data/")
      bbb.run(
          [resource_path + "macs2.Human.DRR000150.22.bam"],
          []
      )
      print "Start : %s" % time.ctime()
      time.sleep (10)
      print "End : %s" % time.ctime()
  
      assert os.path.isfile(resource_path + "macs2.Human.DRR000150.22.filtered.bam") is True
      testFile = open(resource_path + "macs2.Human.DRR000150.22.filtered.bam")
      print ("read line: ")
      print (testFile.readline())
      assert os.path.getsize(resource_path + "macs2.Human.DRR000150.22.filtered.bam") > 0
  
new_contents: """
  .. Copyright 2017 EMBL-European Bioinformatics Institute
  
     Licensed under the Apache License, Version 2.0 (the "License");
     you may not use this file except in compliance with the License.
     You may obtain a copy of the License at
  
         http://www.apache.org/licenses/LICENSE-2.0
  
     Unless required by applicable law or agreed to in writing, software
     distributed under the License is distributed on an "AS IS" BASIS,
     WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
     See the License for the specific language governing permissions and
     limitations under the License.
  """
  
  import os.path
  import time
  import pytest # pylint: disable=unused-import
  
  from tool import biobambam_filter
  
  def test_biobambam():
      """
      Test case to ensure that BioBamBam works
      """
      bbb = biobambam_filter.biobambam()
      resource_path = os.path.join(os.path.dirname(__file__), "data/")
      bbb.run(
          [resource_path + "macs2.Human.DRR000150.22.bam"],
          []
      )
      time.sleep (10)
  
      assert os.path.isfile(resource_path + "macs2.Human.DRR000150.22.filtered.bam") is True
      assert os.path.getsize(resource_path + "macs2.Human.DRR000150.22.filtered.bam") > 0
  
subject: Update test_biobambam.py