old_contents: from pathsimulator import PathSimulator, Bootstrapping, PathSampling
  
  from ensemble import (
      Ensemble, EnsembleCombination, EnsembleFactory, EntersXEnsemble,
      EmptyEnsemble, ExitsXEnsemble, FullEnsemble, PartInXEnsemble,
      AllInXEnsemble, AllOutXEnsemble, WrappedEnsemble,
      BackwardPrependedTrajectoryEnsemble, ForwardAppendedTrajectoryEnsemble,
      PartOutXEnsemble, LengthEnsemble, NegatedEnsemble,
      ReversedTrajectoryEnsemble, SequentialEnsemble, VolumeEnsemble,
      SequentialEnsemble, IntersectionEnsemble, UnionEnsemble,
      SymmetricDifferenceEnsemble, RelativeComplementEnsemble,
      SingleFrameEnsemble, MinusInterfaceEnsemble, TISEnsemble
  )
  
  from snapshot import Snapshot, Configuration, Momentum
  
  from trajectory import Trajectory
  from sample import Sample, SampleSet
  
  from collectivevariable import CV_Function, CV_MD_Function, CV_Featurizer, \
      CV_Volume, CollectiveVariable
  
  from pathmover import (
      BackwardShootMover, MinusMover, RandomChoiceMover, ForwardShootMover, PathMover, PathMoverFactory, PathReversalMover,
      ReplicaExchangeMover, ConditionalSequentialMover, EnsembleHopMover,
      PartialAcceptanceSequentialMover, ReplicaIDChangeMover, SequentialMover,
      ConditionalMover, FilterByReplica, RestrictToLastSampleMover,
      CollapseMove, PathSimulatorMover, PathReversalSet,
      NeighborEnsembleReplicaExchange
  )
  
  
  from shooting import ShootingPoint, ShootingPointSelector, UniformSelector, \
      GaussianBiasSelector, FirstFrameSelector, FinalFrameSelector
  
  from dynamics_engine import DynamicsEngine
  
  from openmm_engine import OpenMMEngine
  
  from volume import Volume, VolumeCombination, VolumeFactory, VoronoiVolume, \
      EmptyVolume, FullVolume, LambdaVolume, LambdaVolumePeriodic, \
      IntersectionVolume, \
      UnionVolume, SymmetricDifferenceVolume, RelativeComplementVolume
  
  from todict import ObjectJSON, ops_object, class_list
  
  from tools import empty_snapshot_from_openmm_topology, snapshot_from_pdb, \
      to_openmm_topology, trajectory_from_mdtraj
  
  from tools import units_from_snapshot
  
  from topology import ToyTopology, Topology, MDTrajTopology
  
  from toy_dynamics.toy_pes import Gaussian, HarmonicOscillator, LinearSlope, \
      OuterWalls, Toy_PES, Toy_PES_Add, Toy_PES_Sub
  
  from toy_dynamics.toy_engine import ToyEngine
  
  from toy_dynamics.toy_integrators import LangevinBAOABIntegrator, \
      LeapfrogVerletIntegrator
  
  from analysis.tis_analysis import TISTransition, RETISTransition, Transition, \
      TPSTransition
  
  from pathmover import Details, MoveDetails, SampleDetails
  
  from pathmovechange import (EmptyPathMoveChange, ConditionalSequentialPathMoveChange,
                        PathMoveChange, PartialAcceptanceSequentialPathMoveChange,
                        RandomChoicePathMoveChange, SamplePathMoveChange,
                        SequentialPathMoveChange,  KeepLastSamplePathMoveChange,
                        CollapsedPathMoveChange, FilterSamplesPathMoveChange,
                        PathSimulatorPathMoveChange
                       )
  
new_contents: from pathsimulator import PathSimulator, Bootstrapping, PathSampling
  
  from ensemble import (
      Ensemble, EnsembleCombination, EnsembleFactory, EntersXEnsemble,
      EmptyEnsemble, ExitsXEnsemble, FullEnsemble, PartInXEnsemble,
      AllInXEnsemble, AllOutXEnsemble, WrappedEnsemble,
      BackwardPrependedTrajectoryEnsemble, ForwardAppendedTrajectoryEnsemble,
      PartOutXEnsemble, LengthEnsemble, NegatedEnsemble,
      ReversedTrajectoryEnsemble, SequentialEnsemble, VolumeEnsemble,
      SequentialEnsemble, IntersectionEnsemble, UnionEnsemble,
      SymmetricDifferenceEnsemble, RelativeComplementEnsemble,
      SingleFrameEnsemble, MinusInterfaceEnsemble, TISEnsemble
  )
  
  from snapshot import Snapshot, Configuration, Momentum
  
  from trajectory import Trajectory
  from sample import Sample, SampleSet
  
  from collectivevariable import CV_Function, CV_MD_Function, CV_Featurizer, \
      CV_Volume, CollectiveVariable
  
  from pathmover import (
      BackwardShootMover, MinusMover, RandomChoiceMover, ForwardShootMover, PathMover, PathMoverFactory, PathReversalMover,
      ReplicaExchangeMover, ConditionalSequentialMover, EnsembleHopMover,
      PartialAcceptanceSequentialMover, ReplicaIDChangeMover, SequentialMover,
      ConditionalMover, FilterByReplica, RestrictToLastSampleMover,
      PathSimulatorMover, PathReversalSet,
      NeighborEnsembleReplicaExchange
  )
  
  
  from shooting import ShootingPoint, ShootingPointSelector, UniformSelector, \
      GaussianBiasSelector, FirstFrameSelector, FinalFrameSelector
  
  from dynamics_engine import DynamicsEngine
  
  from openmm_engine import OpenMMEngine
  
  from volume import Volume, VolumeCombination, VolumeFactory, VoronoiVolume, \
      EmptyVolume, FullVolume, LambdaVolume, LambdaVolumePeriodic, \
      IntersectionVolume, \
      UnionVolume, SymmetricDifferenceVolume, RelativeComplementVolume
  
  from todict import ObjectJSON, ops_object, class_list
  
  from tools import empty_snapshot_from_openmm_topology, snapshot_from_pdb, \
      to_openmm_topology, trajectory_from_mdtraj
  
  from tools import units_from_snapshot
  
  from topology import ToyTopology, Topology, MDTrajTopology
  
  from toy_dynamics.toy_pes import Gaussian, HarmonicOscillator, LinearSlope, \
      OuterWalls, Toy_PES, Toy_PES_Add, Toy_PES_Sub
  
  from toy_dynamics.toy_engine import ToyEngine
  
  from toy_dynamics.toy_integrators import LangevinBAOABIntegrator, \
      LeapfrogVerletIntegrator
  
  from analysis.tis_analysis import TISTransition, RETISTransition, Transition, \
      TPSTransition
  
  from pathmover import Details, MoveDetails, SampleDetails
  
  from pathmovechange import (EmptyPathMoveChange, ConditionalSequentialPathMoveChange,
                        PathMoveChange, PartialAcceptanceSequentialPathMoveChange,
                        RandomChoicePathMoveChange, SamplePathMoveChange,
                        SequentialPathMoveChange,  KeepLastSamplePathMoveChange,
                        CollapsedPathMoveChange, FilterSamplesPathMoveChange,
                        PathSimulatorPathMoveChange
                       )
  
subject: fix __init__