old_contents: ##############################################################################
  # Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
  # Produced at the Lawrence Livermore National Laboratory.
  #
  # This file is part of Spack.
  # Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
  # LLNL-CODE-647188
  #
  # For details, see https://github.com/spack/spack
  # Please also see the NOTICE and LICENSE files for our notice and the LGPL.
  #
  # This program is free software; you can redistribute it and/or modify
  # it under the terms of the GNU Lesser General Public License (as
  # published by the Free Software Foundation) version 2.1, February 1999.
  #
  # This program is distributed in the hope that it will be useful, but
  # WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
  # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
  # conditions of the GNU Lesser General Public License for more details.
  #
  # You should have received a copy of the GNU Lesser General Public
  # License along with this program; if not, write to the Free Software
  # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
  ##############################################################################
  from spack import *
  
  
  class RSummarizedexperiment(RPackage):
      """The SummarizedExperiment container contains one or more assays, each
         represented by a matrix-like object of numeric or other mode. The rows
         typically represent genomic ranges of interest and the columns
         represent samples."""
  
      homepage = "https://bioconductor.org/packages/SummarizedExperiment/"
      url      = "https://git.bioconductor.org/packages/SummarizedExperiment"
      list_url = homepage
  
      version('1.6.5', git='https://git.bioconductor.org/packages/SummarizedExperiment', commit='ec69cd5cfbccaef148a9f6abdfb3e22e888695d0')
  
      depends_on('r-genomicranges', type=('build', 'run'))
      depends_on('r-biobase', type=('build', 'run'))
      depends_on('r-delayedarray', type=('build', 'run'))
      depends_on('r-matrix', type=('build', 'run'))
      depends_on('r-s4vectors', type=('build', 'run'))
      depends_on('r-iranges', type=('build', 'run'))
      depends_on('r-genomeinfodb', type=('build', 'run'))
      depends_on('r@3.4.0:3.4.9', when='@1.6.5')
  
new_contents: ##############################################################################
  # Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
  # Produced at the Lawrence Livermore National Laboratory.
  #
  # This file is part of Spack.
  # Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
  # LLNL-CODE-647188
  #
  # For details, see https://github.com/spack/spack
  # Please also see the NOTICE and LICENSE files for our notice and the LGPL.
  #
  # This program is free software; you can redistribute it and/or modify
  # it under the terms of the GNU Lesser General Public License (as
  # published by the Free Software Foundation) version 2.1, February 1999.
  #
  # This program is distributed in the hope that it will be useful, but
  # WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
  # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
  # conditions of the GNU Lesser General Public License for more details.
  #
  # You should have received a copy of the GNU Lesser General Public
  # License along with this program; if not, write to the Free Software
  # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
  ##############################################################################
  from spack import *
  
  
  class RSummarizedexperiment(RPackage):
      """The SummarizedExperiment container contains one or more assays, each
         represented by a matrix-like object of numeric or other mode. The rows
         typically represent genomic ranges of interest and the columns
         represent samples."""
  
      homepage = "https://bioconductor.org/packages/SummarizedExperiment/"
      url      = "https://git.bioconductor.org/packages/SummarizedExperiment"
      list_url = homepage
  
      version('1.8.1', git='https://git.bioconductor.org/packages/SummarizedExperiment', commit='9d8a29aa9c78bbc7dcc6472537e13fc0d11dc1f7')
      version('1.6.5', git='https://git.bioconductor.org/packages/SummarizedExperiment', commit='ec69cd5cfbccaef148a9f6abdfb3e22e888695d0')
  
      depends_on('r-genomicranges@1.27.22:', type=('build', 'run'), when='@1.6.5')
      depends_on('r-genomicranges@1.29.14:', type=('build', 'run'), when='@1.8.1')
      depends_on('r-biobase', type=('build', 'run'))
      depends_on('r-delayedarray@0.1.9:', type=('build', 'run'), when='@1.6.5')
      depends_on('r-delayedarray@0.3.20', type=('build', 'run'), when='@1.8.1')
      depends_on('r-matrix', type=('build', 'run'))
      depends_on('r-s4vectors', type=('build', 'run'))
      depends_on('r-iranges', type=('build', 'run'))
      depends_on('r-genomeinfodb', type=('build', 'run'))
      depends_on('r@3.4.0:3.4.9', when='@1.6.5:')
  
subject: package update (#7790)