old_contents: # -*- coding: utf-8 -*-
  
  from scout.commands import cli
  from scout.server.extensions import store
  
  
  def test_update_compounds(mock_app, case_obj):
      """Tests the CLI that updates all compounds for a case"""
  
      runner = mock_app.test_cli_runner()
      assert runner
  
      # Test CLI base, no arguments provided
      result = runner.invoke(cli, ["update", "compounds"])
      # it should return error message
      assert 'Missing argument "case_id"' in result.output
  
      # Provide case_id of a case not in database
      result = runner.invoke(cli, ["update", "compounds", "unknown_case_id"])
      # it should return error message
      assert "Case unknown_case_id could not be found" in result.output
  
      # Provide case_id of an existing case
      result = runner.invoke(cli, ["update", "compounds", case_obj["_id"]])
      # command should work
      assert result.exit_code == 0
      assert "All compounds updated" in result.output
  
new_contents: # -*- coding: utf-8 -*-
  
  from scout.commands import cli
  from scout.server.extensions import store
  
  
  def test_update_compounds(mock_app, case_obj):
      """Tests the CLI that updates all compounds for a case"""
  
      runner = mock_app.test_cli_runner()
      assert runner
  
      # Test CLI base, no arguments provided
      result = runner.invoke(cli, ["update", "compounds"])
      # it should return error message
      assert "Missing argument 'CASE_ID'" in result.output
  
      # Provide case_id of a case not in database
      result = runner.invoke(cli, ["update", "compounds", "unknown_case_id"])
      # it should return error message
      assert "Case unknown_case_id could not be found" in result.output
  
      # Provide case_id of an existing case
      result = runner.invoke(cli, ["update", "compounds", case_obj["_id"]])
      # command should work
      assert result.exit_code == 0
      assert "All compounds updated" in result.output
  
subject: fix update compounds test