old_contents: import getopt
  import sys
  
  from genologics.entities import Process
  from genologics.lims import Lims
  
  HOSTNAME = ""
  VERSION = ""
  BASE_URI = ""
  
  api = None
  args = None
  
  
  def get_workflow_stage(lims, workflow_name, stage_name=None):
      workflows = [w for w in lims.get_workflows() if w.name == workflow_name]
      if len(workflows) != 1:
          return
      if not stage_name:
          return workflows[0].stages[0]
      stages = [s for s in workflows[0].stages if s.name == stage_name]
      if len(stages) != 1:
          return
      return stages[0]
  
  
  def assignWorkflow():
      LIMSID = args["limsid"]
      usernameargs = args["username"]
      passwordargs = args["password"]
      stepURI = args["stepURI"]
      apiLocation = stepURI.find('/api')
      BASE_URI = stepURI[0:apiLocation]
      l = Lims(baseuri=BASE_URI, username=usernameargs, password=passwordargs)
      p = Process(l, id=LIMSID)
      artifacts = p.all_inputs()
      for art in artifacts:
          sample = art.samples[0]
          submitted_art = sample.artifact
          if art.samples[0].udf.get("Proceed To SeqLab") == True:
              stage = get_workflow_stage(l, "PreSeqLab EG 6.0", "Sequencing Plate Preparation EG 2.0")
              l.route_artifacts([submitted_art], stage_uri=stage.uri)
              print("deployedagain")
  
          #if sample.udf.get("Species") == "Homo sapiens" or sample.udf.get("Species") == "Human":
              #stage = get_workflow_stage(l, "QuantStudio EG1.0", "QuantStudio Plate Preparation EG1.0")
              #l.route_artifacts([submitted_art], stage_uri=stage.uri)
  
  
  def main():
      global api
      global args
  
      args = {}
  
      opts, extraparams = getopt.getopt(sys.argv[1:], "l:s:u:p:")
  
      for o, p in opts:
          if o == '-l':
              args["limsid"] = p
          elif o == '-s':
              args["stepURI"] = p
          elif o == '-u':
              args["username"] = p
          elif o == '-p':
              args["password"] = p
  
      ## at this point, we have the parameters the EPP plugin passed, and we have network plumbing
      ## so let's get this show on the road!
      assignWorkflow()
  
  
  if __name__ == "__main__":
      main()
  
new_contents: import getopt
  import sys
  
  from genologics.entities import Process
  from genologics.lims import Lims
  
  HOSTNAME = ""
  VERSION = ""
  BASE_URI = ""
  
  api = None
  args = None
  
  
  def get_workflow_stage(lims, workflow_name, stage_name=None):
      workflows = [w for w in lims.get_workflows() if w.name == workflow_name]
      if len(workflows) != 1:
          return
      if not stage_name:
          return workflows[0].stages[0]
      stages = [s for s in workflows[0].stages if s.name == stage_name]
      if len(stages) != 1:
          return
      return stages[0]
  
  
  def assignWorkflow():
      LIMSID = args["limsid"]
      usernameargs = args["username"]
      passwordargs = args["password"]
      stepURI = args["stepURI"]
      apiLocation = stepURI.find('/api')
      BASE_URI = stepURI[0:apiLocation]
      l = Lims(baseuri=BASE_URI, username=usernameargs, password=passwordargs)
      p = Process(l, id=LIMSID)
      artifacts = p.all_inputs()
      for art in artifacts:
          sample = art.samples[0]
          submitted_art = sample.artifact
          print("deployedagain")
          if art.samples[0].udf.get("Proceed To SeqLab") == True:
              stage = get_workflow_stage(l, "PreSeqLab EG 6.0", "Sequencing Plate Preparation EG 2.0")
              l.route_artifacts([submitted_art], stage_uri=stage.uri)
              print("deployedagain")
  
          #if sample.udf.get("Species") == "Homo sapiens" or sample.udf.get("Species") == "Human":
              #stage = get_workflow_stage(l, "QuantStudio EG1.0", "QuantStudio Plate Preparation EG1.0")
              #l.route_artifacts([submitted_art], stage_uri=stage.uri)
  
  
  def main():
      global api
      global args
  
      args = {}
  
      opts, extraparams = getopt.getopt(sys.argv[1:], "l:s:u:p:")
  
      for o, p in opts:
          if o == '-l':
              args["limsid"] = p
          elif o == '-s':
              args["stepURI"] = p
          elif o == '-u':
              args["username"] = p
          elif o == '-p':
              args["password"] = p
  
      ## at this point, we have the parameters the EPP plugin passed, and we have network plumbing
      ## so let's get this show on the road!
      assignWorkflow()
  
  
  if __name__ == "__main__":
      main()
  
subject: Print statement added