old_contents: import os
  import pymongo
  import imp
  
  
  # django stuff
  xbrowse_install_dir = os.path.abspath(os.path.join(os.path.dirname(__file__), "../../../../.."))
  
  DEBUG = True
  #COMPRESS_ENABLED = False
  BASE_URL = '/'
  URL_PREFIX = '/'
  
  GENERATED_FILES_DIR = os.path.join(xbrowse_install_dir, 'generated_files')
  
  DATABASES = {
      'default': {
          'ENGINE': 'django.db.backends.sqlite3',
          'NAME': os.path.join(xbrowse_install_dir, 'xbrowse_db.sqlite'),
          'USER': '',
          'PASSWORD': '',
          'HOST': '',
          'PORT': '',
      }
  }
  
  ALLOWED_HOSTS = ['*']
  
  EMAIL_BACKEND = 'django.core.mail.backends.console.EmailBackend'
  
  
  #
  # xbrowse stuff
  #
  
  REFERENCE_SETTINGS = imp.load_source(
      'reference_settings',
      os.path.dirname(os.path.realpath(__file__)) + '/reference_settings.py'
  )
  
  CUSTOM_ANNOTATOR_SETTINGS = imp.load_source(
      'custom_annotation_settings',
      os.path.dirname(os.path.realpath(__file__)) + '/custom_annotator_settings.py'
  )
  
  ANNOTATOR_SETTINGS = imp.load_source(
      'annotator_settings',
      os.path.dirname(os.path.realpath(__file__)) + '/annotator_settings.py'
  )
  
  _conn = pymongo.MongoClient()
  DATASTORE_DB = _conn['xbrowse_datastore']
  POPULATION_DATASTORE_DB = _conn['xbrowse_pop_datastore']
  
  DEFAULT_CONTROL_COHORT = 'controls'
  CONTROL_COHORTS = [
      {
          'slug': 'controls',
          'vcf': '',
      },
  ]
  
  COVERAGE_DB = _conn['xbrowse_coverage']
  
  PROJECT_DATASTORE_DB = _conn['xbrowse_proj_store']
  
  CNV_STORE_DB_NAME = 'xbrowse_cnvs'
  
  CUSTOM_POPULATIONS_DB = _conn['xcustom_refpops']
  
  READ_VIZ_BAM_PATH = "/Volumes/hd/xbrowse/data/bams/"
  
  # Email settings
  #EMAIL_BACKEND = 'django.core.mail.backends.console.EmailBackend'
  
  
new_contents: import os
  import pymongo
  import imp
  
  
  # django stuff
  xbrowse_install_dir = os.path.abspath(os.path.join(os.path.dirname(__file__), "../../../../.."))
  xbrowse_reference_data_dir = os.path.join(xbrowse_install_dir, 'data/reference_data')
  
  DEBUG = True
  #COMPRESS_ENABLED = False
  BASE_URL = '/'
  URL_PREFIX = '/'
  
  GENERATED_FILES_DIR = os.path.join(xbrowse_install_dir, 'generated_files')
  
  DATABASES = {
      'default': {
          'ENGINE': 'django.db.backends.sqlite3',
          'NAME': os.path.join(xbrowse_install_dir, 'xbrowse_db.sqlite'),
          'USER': '',
          'PASSWORD': '',
          'HOST': '',
          'PORT': '',
      }
  }
  
  ALLOWED_HOSTS = ['*']
  
  EMAIL_BACKEND = 'django.core.mail.backends.console.EmailBackend'
  
  
  #
  # xbrowse stuff
  #
  
  REFERENCE_SETTINGS = imp.load_source(
      'reference_settings',
      os.path.dirname(os.path.realpath(__file__)) + '/reference_settings.py'
  )
  
  CUSTOM_ANNOTATOR_SETTINGS = imp.load_source(
      'custom_annotation_settings',
      os.path.dirname(os.path.realpath(__file__)) + '/custom_annotator_settings.py'
  )
  
  ANNOTATOR_SETTINGS = imp.load_source(
      'annotator_settings',
      os.path.dirname(os.path.realpath(__file__)) + '/annotator_settings.py'
  )
  
  _conn = pymongo.MongoClient()
  DATASTORE_DB = _conn['xbrowse_datastore']
  POPULATION_DATASTORE_DB = _conn['xbrowse_pop_datastore']
  
  DEFAULT_CONTROL_COHORT = 'controls'
  CONTROL_COHORTS = [
      {
          'slug': 'controls',
          'vcf': '',
      },
  ]
  
  COVERAGE_DB = _conn['xbrowse_coverage']
  
  PROJECT_DATASTORE_DB = _conn['xbrowse_proj_store']
  
  CNV_STORE_DB_NAME = 'xbrowse_cnvs'
  
  CUSTOM_POPULATIONS_DB = _conn['xcustom_refpops']
  
  READ_VIZ_BAM_PATH = os.path.join(xbrowse_reference_data_dir, "bams")
  
  CLINVAR_TSV  = os.path.join(xbrowse_reference_data_dir, "clinvar.tsv")
  
  # Email settings
  #EMAIL_BACKEND = 'django.core.mail.backends.console.EmailBackend'
  
  
subject: update clinvar.tsv path