old_contents: from setuptools import setup, find_packages
  from os import system
  
  system('make')
  
  setup(name='abruijn',
        version='0.4b',
        description='Long read assembly via A-Bruijn graph',
        url='https://github.com/fenderglass/ABruijn',
        author='Mikhail Kolmogorov',
        author_email = '',
        license='BSD-3-Clause',
        packages=['abruijn'],
        package_data={'abruijn': ['resource/*.mat']},
        scripts = ['bin/abruijn-assemble', 'bin/abruijn-polish', 'scripts/abruijn'],
        #data_files=['resource/nano_homopolymers.mat', 'resource/nano_substitutions.mat', 'resource/p6c4_homopolymers.mat',
        #            'resource/p6c4_substitutions.mat', 'resource/pacbio_homopolymers.mat', 'resource/pacbio_substitutions.mat']
        )
  
  
new_contents: from setuptools import setup, find_packages
  from os import system
  
  system('make')
  
  setup(name='abruijn',
        version='0.4b',
        description='Long read assembly via A-Bruijn graph',
        url='https://github.com/fenderglass/ABruijn',
        author='Mikhail Kolmogorov',
        author_email = '',
        license='BSD-3-Clause',
        packages=['abruijn'],
        package_data={'abruijn': ['resource/*.mat']},
        scripts = ['bin/abruijn-assemble', 'bin/abruijn-polish', 'scripts/abruijn'],
        )
  
  
subject: Clean up commented lines