old_contents: import os
  from setuptools import setup
  
  
  # Utility function to read the README file.
  # Used for the long_description.  It's nice, because now 1) we have a top level
  # README file and 2) it's easier to type in the README file than to put a raw
  # string in below ...
  
  SCRIPTS = []
  SCRIPTS.extend([os.path.join("scripts", script)
  				for script in os.listdir(os.path.join(os.path.dirname(__file__), "scripts"))
  				if script.endswith(".py")])
  
  HERE = os.path.abspath(os.path.dirname(__file__))
  with open(os.path.join(HERE, 'README.md'), 'r') as fid:
  	LONG_DESCRIPTION = fid.read()
  
  setup(
  	name="CMash",
  	version="0.3.0",
  	author="David Koslicki",
  	author_email="dmkoslicki@gmail.com",
  	description=("Fast and accurate set similarity estimation via containment min hash (for genomic datasets)."),
  	long_description=LONG_DESCRIPTION,
  	#license="BSD-3-Clause",  # see classifiers
  	keywords="jaccard min hash containment genomics metagenomics",
  	url="https://github.com/dkoslicki/CMash",
  	packages=['CMash'],
  	install_requires=[
  		'khmer>=2.1.1',
  		'screed',
  		'h5py',
  		'numpy',
  		'blist',
  		'argparse',
  		'pandas>=0.21.1',
  		'setuptools>=24.2.0',
  		'six',
  		'scipy',
  		'matplotlib',
  		'marisa-trie',
  		'hydra',
  		'pycairo'
  	],
  	zip_safe=False,
  	package_data={'CMash': ['data/*.fna']},
  	scripts=SCRIPTS,
  	classifiers=[
  		"Development Status :: 3 - Alpha",
  		"Topic :: Scientific/Engineering :: Bio-Informatics",
  		"Topic :: Scientific/Engineering :: Mathematics",
  		"Programming Language :: Python :: 2.7",
  		"License :: OSI Approved :: BSD License",
  		"Intended Audience :: Science/Research",
  		"Programming Language :: Python :: 3.5",
  		"Natural Language :: English",
  		"Operating System :: MacOS :: MacOS X",
  		"Operating System :: POSIX :: Linux",
  	],
  )
  
new_contents: import os
  from setuptools import setup
  
  
  # Utility function to read the README file.
  # Used for the long_description.  It's nice, because now 1) we have a top level
  # README file and 2) it's easier to type in the README file than to put a raw
  # string in below ...
  
  SCRIPTS = []
  SCRIPTS.extend([os.path.join("scripts", script)
  				for script in os.listdir(os.path.join(os.path.dirname(__file__), "scripts"))
  				if script.endswith(".py")])
  
  HERE = os.path.abspath(os.path.dirname(__file__))
  with open(os.path.join(HERE, 'README.md'), 'r') as fid:
  	LONG_DESCRIPTION = fid.read()
  
  setup(
  	name="CMash",
  	version="0.4.0",
  	author="David Koslicki",
  	author_email="dmkoslicki@gmail.com",
  	description=("Fast and accurate set similarity estimation via containment min hash (for genomic datasets)."),
  	long_description=LONG_DESCRIPTION,
  	#license="BSD-3-Clause",  # see classifiers
  	keywords="jaccard min hash containment genomics metagenomics",
  	url="https://github.com/dkoslicki/CMash",
  	packages=['CMash'],
  	install_requires=[
  		'khmer>=2.1.1',
  		'screed',
  		'h5py',
  		'numpy',
  		'blist',
  		'argparse',
  		'pandas>=0.21.1',
  		'setuptools>=24.2.0',
  		'six',
  		'scipy',
  		'matplotlib',
  		'marisa-trie',
  		'hydra',
  		'pycairo'
  	],
  	zip_safe=False,
  	package_data={'CMash': ['data/*.fna']},
  	scripts=SCRIPTS,
  	classifiers=[
  		"Development Status :: 3 - Alpha",
  		"Topic :: Scientific/Engineering :: Bio-Informatics",
  		"Topic :: Scientific/Engineering :: Mathematics",
  		"Programming Language :: Python :: 2.7",
  		"License :: OSI Approved :: BSD License",
  		"Intended Audience :: Science/Research",
  		"Programming Language :: Python :: 3.5",
  		"Natural Language :: English",
  		"Operating System :: MacOS :: MacOS X",
  		"Operating System :: POSIX :: Linux",
  	],
  )
  
subject: bump version number to prep for master merge #13