old_contents: #!/usr/bin/env python
  
  from integrationtest import IntegrationTest, main
  import unittest
  
  class TestCreate(IntegrationTest, unittest.TestCase):
      def test_junctions_create(self):
          bam1 = self.inputFiles("test.rnaseq.bam")[0]
          output_file = self.tempFile("create.out")
          print "BAM1 is ", bam1
          for anchor in ["", "30"]:
              expected_file = self.inputFiles("junctions-create/expected-a" +
                                              anchor + ".out")[0]
              if anchor != "":
                  anchor = "-a " + anchor
              params = [ "junctions", "create", bam1, anchor, "-o", output_file]
              rv, err = self.execute(params)
              self.assertEqual(rv, 0)
              #self.assertEqual('', err)
              self.assertFilesEqual(expected_file, output_file)
  
  if __name__ == "__main__":
      main()
  
new_contents: #!/usr/bin/env python
  
  from integrationtest import IntegrationTest, main
  import unittest
  
  class TestCreate(IntegrationTest, unittest.TestCase):
      def test_junctions_create(self):
          bam1 = self.inputFiles("test_hcc1395.bam")[0]
          output_file = self.tempFile("create.out")
          print "BAM1 is ", bam1
          for anchor in ["", "30"]:
              expected_file = self.inputFiles("junctions-create/expected-a" +
                                              anchor + ".out")[0]
              if anchor != "":
                  anchor = "-a " + anchor
              params = [ "junctions", "create", bam1, anchor, "-o", output_file]
              rv, err = self.execute(params)
              self.assertEqual(rv, 0)
              #self.assertEqual('', err)
              self.assertFilesEqual(expected_file, output_file)
  
  if __name__ == "__main__":
      main()
  
subject: Fix test bam-file name