old_contents: # -*- coding: utf-8 -*-
  import logging
  
  LOG = logging.getLogger(__name__)
  
  def institute(store, institute_id):
      """ Process institute data.
  
      Args:
          store(adapter.MongoAdapter)
          institute_id(str)
  
      Returns
          data(dict): includes institute obj and specific settings
      """
  
      institute_obj = store.institute(institute_id)
      users = store.users(institute_id)
  
      data = {
          'institute' : institute_obj,
          'users': users,
      }
      return data
  
  def update_institute_settings(store, institute_obj, form):
      """ Update institute settings with data collected from institute form
  
      Args:
          score(adapter.MongoAdapter)
          institute_id(str)
          form(dict)
  
      Returns:
          updated_institute(dict)
  
      """
      sanger_recipients = []
      sharing_institutes = []
      phenotype_groups = []
      group_abbreviations = []
      cohorts = []
  
      for email in form.getlist('sanger_emails'):
          sanger_recipients.append(email.strip())
  
      for inst in form.getlist('institutes'):
          sharing_institutes.append(inst)
  
      for pheno_group in form.getlist('pheno_groups'):
          phenotype_groups.append(pheno_group.split(' ,')[0])
          group_abbreviations.append(pheno_group[pheno_group.find("( ")+2:pheno_group.find(" )")])
  
      if form.get('hpo_term') and form.get('pheno_abbrev'):
          phenotype_groups.append(form['hpo_term'].split(' |')[0])
          group_abbreviations.append(form['pheno_abbrev'])
  
      for cohort in form.getlist('cohorts'):
          cohorts.append(cohort.strip())
  
      updated_institute = store.update_institute(
          internal_id = institute_obj['internal_id'],
          sanger_recipients = sanger_recipients,
          coverage_cutoff = int(form.get('coverage_cutoff')),
          frequency_cutoff = float(form.get('frequency_cutoff')),
          display_name = form.get('display_name'),
          phenotype_groups = phenotype_groups,
          group_abbreviations = group_abbreviations,
          add_groups = False,
          sharing_institutes = sharing_institutes,
          cohorts = cohorts
      )
      return updated_institute
  
new_contents: # -*- coding: utf-8 -*-
  import logging
  
  LOG = logging.getLogger(__name__)
  
  def institute(store, institute_id):
      """ Process institute data.
  
      Args:
          store(adapter.MongoAdapter)
          institute_id(str)
  
      Returns
          data(dict): includes institute obj and specific settings
      """
  
      institute_obj = store.institute(institute_id)
      users = store.users(institute_id)
  
      data = {
          'institute' : institute_obj,
          'users': users,
      }
      return data
  
  def update_institute_settings(store, institute_obj, form):
      """ Update institute settings with data collected from institute form
  
      Args:
          score(adapter.MongoAdapter)
          institute_id(str)
          form(dict)
  
      Returns:
          updated_institute(dict)
  
      """
      sanger_recipients = []
      sharing_institutes = []
      phenotype_groups = []
      group_abbreviations = []
      cohorts = []
  
      for email in form.getlist('sanger_emails'):
          sanger_recipients.append(email.strip())
  
      for inst in form.getlist('institutes'):
          sharing_institutes.append(inst)
  
      for pheno_group in form.getlist('pheno_groups'):
          phenotype_groups.append(pheno_group.split(' ,')[0])
          group_abbreviations.append(pheno_group[pheno_group.find("( ")+2:pheno_group.find(" )")])
  
      if form.get('hpo_term') and form.get('pheno_abbrev'):
          phenotype_groups.append(form['hpo_term'].split(' |')[0])
          group_abbreviations.append(form['pheno_abbrev'])
  
      for cohort in form.getlist('cohorts'):
          cohorts.append(cohort.strip())
  
      updated_institute = store.update_institute(
          internal_id = institute_obj['_id'],
          sanger_recipients = sanger_recipients,
          coverage_cutoff = int(form.get('coverage_cutoff')),
          frequency_cutoff = float(form.get('frequency_cutoff')),
          display_name = form.get('display_name'),
          phenotype_groups = phenotype_groups,
          group_abbreviations = group_abbreviations,
          add_groups = False,
          sharing_institutes = sharing_institutes,
          cohorts = cohorts
      )
      return updated_institute
  
subject: fix other bug