old_contents: from setuptools import setup
  
  setup(
      name='methylpy',
      version='1.0.0',
      author='Yupeng He',
      author_email='yupeng.he.bioinfo@gmail.com',
      packages=['methylpy'], 
      url='http://pypi.python.org/pypi/methylpy/',
      license='LICENSE.txt',
      description='Bisulfite sequencing data processing and differential methylation analysis',
      long_description=open('README.md').read(),
      install_requires=[
          "numpy >= 1.6.1",
  	"scipy >= 0.10.0",
      ],
      package_data = {
  	'methylpy':['rms.cpp', 'run_rms_tests.out']
      },
      keywords = ["Bioinformatics pipeline",
                  "DNA methylation",
                  "Bisulfite sequencing data",
                  "Nome-seq data",
                  "Differential methylation",
                  "Calling DMRs",
                  "Epigenetics",
                  "Functional genomics"],
      scripts = ["bin/methylpy"]
  )
  
new_contents: from distutils.core import setup
  
  setup(
      name='methylpy',
      version='1.0.0',
      author='Yupeng He',
      author_email='yupeng.he.bioinfo@gmail.com',
      packages=['methylpy'], 
      url='http://pypi.python.org/pypi/methylpy/',
      download_url='https://github.com/yupenghe/methylpy/archive/1.0.0.tar.gz',
      license='LICENSE.txt',
      description='Bisulfite sequencing data processing and differential methylation analysis',
      long_description=open('README.md').read(),
      install_requires=[
          "numpy >= 1.6.1",
  	"scipy >= 0.10.0",
      ],
      package_data = {
  	'methylpy':['rms.cpp', 'run_rms_tests.out']
      },
      keywords = ["Bioinformatics pipeline",
                  "DNA methylation",
                  "Bisulfite sequencing data",
                  "Nome-seq data",
                  "Differential methylation",
                  "Calling DMRs",
                  "Epigenetics",
                  "Functional genomics"],
      scripts = ["bin/methylpy"]
  )
  
subject: update setup.py