old_contents: ##############################################################################
  # Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
  # Produced at the Lawrence Livermore National Laboratory.
  #
  # This file is part of Spack.
  # Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
  # LLNL-CODE-647188
  #
  # For details, see https://github.com/spack/spack
  # Please also see the NOTICE and LICENSE files for our notice and the LGPL.
  #
  # This program is free software; you can redistribute it and/or modify
  # it under the terms of the GNU Lesser General Public License (as
  # published by the Free Software Foundation) version 2.1, February 1999.
  #
  # This program is distributed in the hope that it will be useful, but
  # WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
  # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
  # conditions of the GNU Lesser General Public License for more details.
  #
  # You should have received a copy of the GNU Lesser General Public
  # License along with this program; if not, write to the Free Software
  # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
  ##############################################################################
  from spack import *
  
  
  class Rsem(MakefilePackage):
      """RSEM is a software package for estimating gene and isoform expression
         levels from RNA-Seq data."""
  
      homepage = "http://deweylab.github.io/RSEM/"
      url      = "https://github.com/deweylab/RSEM/archive/v1.3.0.tar.gz"
  
      version('1.3.0', '9728161625d339d022130e2428604bf5')
  
      depends_on('r', type=('build', 'run'))
      depends_on('perl', type=('build', 'run'))
      depends_on('python', type=('build', 'run'))
      depends_on('bowtie')
      depends_on('bowtie2')
      depends_on('star')
  
      def install(self, spec, prefix):
          make('install', 'DESTDIR=%s' % prefix, 'prefix=')
  
new_contents: ##############################################################################
  # Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
  # Produced at the Lawrence Livermore National Laboratory.
  #
  # This file is part of Spack.
  # Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
  # LLNL-CODE-647188
  #
  # For details, see https://github.com/spack/spack
  # Please also see the NOTICE and LICENSE files for our notice and the LGPL.
  #
  # This program is free software; you can redistribute it and/or modify
  # it under the terms of the GNU Lesser General Public License (as
  # published by the Free Software Foundation) version 2.1, February 1999.
  #
  # This program is distributed in the hope that it will be useful, but
  # WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
  # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
  # conditions of the GNU Lesser General Public License for more details.
  #
  # You should have received a copy of the GNU Lesser General Public
  # License along with this program; if not, write to the Free Software
  # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
  ##############################################################################
  from spack import *
  
  
  class Rsem(MakefilePackage):
      """RSEM is a software package for estimating gene and isoform expression
         levels from RNA-Seq data."""
  
      homepage = "http://deweylab.github.io/RSEM/"
      url      = "https://github.com/deweylab/RSEM/archive/v1.3.0.tar.gz"
  
      version('1.3.0', '273fd755e23d349cc38a079b81bb03b6')
  
      depends_on('r', type=('build', 'run'))
      depends_on('perl', type=('build', 'run'))
      depends_on('python', type=('build', 'run'))
      depends_on('bowtie')
      depends_on('bowtie2')
      depends_on('star')
  
      def install(self, spec, prefix):
          make('install', 'DESTDIR=%s' % prefix, 'prefix=')
  
subject: update version 1.3.0 md5sum (#6650)