| Citing BioMASS |
| ============== |
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| If you use BioMASS in your research, please cite the following paper: |
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| * Arakane, K., Imoto, H., Ormersbach, F. & Okada, M. Extending BioMASS to construct mathematical models from external knowledge. *Bioinformatics Advances* **4**, vbae042 (2024). https://doi.org/10.1093/bioadv/vbae042 |
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| *In BibTeX format:* |
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| .. code-block:: bibtex |
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| @article{10.1093/bioadv/vbae042, |
| author = {Arakane, Kiwamu and Imoto, Hiroaki and Ormersbach, Fabian and Okada, Mariko}, |
| title = "{Extending BioMASS to construct mathematical models from external knowledge}", |
| journal = {Bioinformatics Advances}, |
| volume = {4}, |
| number = {1}, |
| pages = {vbae042}, |
| year = {2024}, |
| month = {04}, |
| issn = {2635-0041}, |
| doi = {10.1093/bioadv/vbae042}, |
| url = {https://doi.org/10.1093/bioadv/vbae042}, |
| eprint = {https://academic.oup.com/bioinformaticsadvances/advance-article-pdf/doi/10.1093/bioadv/vbae042/57163215/vbae042.pdf}, |
| } |
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| If you construct a mathematical model using :class:`biomass.construction.text2model.Text2Model`, please also cite the `Pasmopy <https://github.com/pasmopy/pasmopy>`_ paper: |
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| * Imoto, H., Yamashiro, S. & Okada, M. A text-based computational framework for patient -specific modeling for classification of cancers. *iScience* **25**, 103944 (2022). https://doi.org/10.1016/j.isci.2022.103944 |
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| *In BibTeX format:* |
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| .. code-block:: bibtex |
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| @article{imoto2022text, |
| title = {A text-based computational framework for patient-specific modeling for classification of cancers}, |
| author = {Imoto, Hiroaki and Yamashiro, Sawa and Okada, Mariko}, |
| journal = {iScience}, |
| volume = {25}, |
| number = {3}, |
| pages = {103944}, |
| year = {2022}, |
| publisher = {Elsevier}, |
| doi = {10.1016/ j.isci.2022.103944}, |
| url = {https://www.cell.com/iscience/fulltext/S2589-0042(22)00214-0} |
| } |
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| When presenting work that uses BioMASS, feel free to use the logo. |
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| .. image:: _static/img/biomass-logo.png |
| :width: 500px |
| :align: center |
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