|PyPI version| |Actions Status| |Documentation Status| |License| |Downloads| |Python versions| |Pre commit| |Code style| |Imports| ===================== BioMASS documentation ===================== **Source code:** https://github.com/biomass-dev/biomass Arakane, K., Imoto, H., Ormersbach, F. & Okada, M. Extending BioMASS to construct mathematical models from external knowledge. *Bioinformatics Advances* **4**, vbae042 (2024). https://doi.org/10.1093/bioadv/vbae042 .. toctree:: :maxdepth: 1 :caption: Contents: about installation tutorial/index models api/index references citing .. |PyPI version| image:: https://img.shields.io/pypi/v/biomass.svg?logo=PyPI&logoColor=white :target: https://pypi.python.org/pypi/biomass/ :alt: PyPI version .. |Actions Status| image:: https://github.com/biomass-dev/biomass/workflows/Tests/badge.svg :target: https://github.com/biomass-dev/biomass/actions :alt: Actions Status .. |Documentation Status| image:: https://img.shields.io/readthedocs/biomass-core/latest.svg?logo=read%20the%20docs&logoColor=white&&label=Docs&version=latest :target: https://biomass-core.readthedocs.io/en/latest/?badge=latest :alt: Documentation Status .. |License| image:: https://img.shields.io/badge/License-Apache%202.0-green.svg :target: https://opensource.org/licenses/Apache-2.0 :alt: License .. |Downloads| image:: https://static.pepy.tech/badge/biomass :target: https://pepy.tech/project/biomass :alt: Downloads .. |Python versions| image:: https://img.shields.io/pypi/pyversions/biomass.svg?logo=Python&logoColor=white :target: https://pypi.python.org/pypi/biomass/ :alt: Python versions .. |Pre commit| image:: https://results.pre-commit.ci/badge/github/biomass-dev/biomass/master.svg :target: https://results.pre-commit.ci/latest/github/biomass-dev/biomass/master :alt: pre-commit.ci status .. |Code style| image:: https://img.shields.io/badge/code%20style-black-000000.svg :target: https://github.com/psf/black :alt: Code style: black .. |Imports| image:: https://img.shields.io/badge/%20imports-isort-%231674b1?style=flat&labelColor=ef8336 :target: https://pycqa.github.io/isort/ :alt: Imports: isort