# The main entry point of workflow.
# After configuring, running snakemake -n in a clone of this repository should successfully execute a dry-run of the workflow.

include: "rules/common.smk"
include: "rules/ref.smk"
include: "rules/qc.smk"
include: "rules/cutadapt.smk"
include: "rules/mapping.smk"
include: "rules/filtering.smk"
include: "rules/stats.smk"
include: "rules/utils.smk"
include: "rules/post-analysis.smk"
include: "rules/peak_analysis.smk"

rule all:
    input: all_input
