BCL2FASTQ2_CONTAINER = "geoffw/centos_bcl2fastq2"
BCL2FASTQ_EXE = "bcl2fastq"
BCL2FASTQ_VERSION = "v2.16.0.10"

ARCTIC_PATH = "/home/geoffw/sandpit/ncov2019-artic-nf"
ARCTIC_CACHE = "/home/geoffw/miniconda3/envs/artic-ncov2019-illumina/"
ARCTIC_BED = "/fastdata/ncov2019-arctic/nCoV-2019/V3/nCoV-2019.bed"
ARCTIC_REF = "nCoV-2019.reference.fasta"
ARCTIC_RESOURCE = "/fastdata/ncov2019-arctic/nCoV-2019/V3/"

NEXTCLADE_DOCKER = "nextstrain/nextclade"
PANGOLIN_DOCKER = "staphb/pangolin:latest"
PICARD_DOCKER = "geoffw/picard1.67"
PICARD_JAR = "/picard-tools-1.67/CollectInsertSizeMetrics.jar"

SAMPLENET = "/mnt/PHEfftransfer/ABI7500_1/"
PHE = "/mnt/cog-uk/Sequencing_Results/Local_Sequencing_Results/"

CLIMB_USER = "climb-covid19-woodwardg"
CLIMB_URL = "bham.covid19.climb.ac.uk"

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  :888X   @888    @88S88S888X
 .88;.     %X8    8@88S8X8:
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 :8.8    888    8XS:%:
 ::8St   88;   88S8;
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