#!/usr/bin/env python
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"""Example for comparison of the same feature of multiple cells."""
import argparse
from pathlib import Path

import pylab as pl
import neurom as nm
from neurom.io.utils import get_morph_files


def parse_args():
    """Parse command line arguments."""
    parser = argparse.ArgumentParser(description='Feature Comparison Between Different Cells')

    parser.add_argument('-d',
                        '--datapath',
                        help='Data directory')

    parser.add_argument('-o',
                        '--odir',
                        default='.',
                        help='Output path')

    parser.add_argument('-f',
                        '--features',
                        nargs='+',
                        help='List features separated by spaces')

    return parser.parse_args()


def stylize(ax, name, feature):
    """Stylization modifications to the plots
    """
    ax.set_ylabel(feature)
    ax.set_title(name, fontsize='small')


def histogram(neuron, feature, ax, bins=15, normed=True, cumulative=False):
    """
    Plot a histogram of the selected feature for the population of morphologies.
    Plots x-axis versus y-axis on a scatter|histogram|binned values plot.

    Parameters :

        morphologies : neuron list

        feature : str
        The feature of interest.

        bins : int
        Number of bins for the histogram.

        cumulative : bool
        Sets cumulative histogram on.

        ax : axes object
            the axes in which the plot is taking place
    """

    feature_values = nm.get(feature, neuron)
    # generate histogram
    ax.hist(feature_values, bins=bins, cumulative=cumulative, normed=normed)


def plot_feature(feature, cell):
    """Plot a feature
    """
    fig = pl.figure()
    ax = fig.add_subplot(111)

    if cell is not None:
        try:
            histogram(cell, feature, ax)
        except ValueError:
            pass
        stylize(ax, cell.name, feature)
    return fig


if __name__ == '__main__':
    args = parse_args()

    for morph_file in get_morph_files(args.datapath):
        m = nm.load_morphology(morph_file)

        for _feature in args.features:
            f = plot_feature(_feature, m)
            figname = "{0}_{1}.eps".format(_feature, m.name)
            f.savefig(Path(args.odir, figname))
            pl.close(f)
