

STAR_PREFIX = 'STAR_'
_star1 = "%sUnmapped.out.mate1" % STAR_PREFIX
_star2 = "%sUnmapped.out.mate2" % STAR_PREFIX
star1 = "star.r1.fq"
star2 = "star.r2.fq"
psf1 =   "psf.r1.fq"
psf2 =   "psf.r2.fq"

cd1 =        "cd.r1.fq"
cd2 =        "cd.r2.fq"

lzw1 = "lzw.r1"
lzw2 = "lzw.r2"

_bowtie1 =    "bowtie.1.1"
_bowtie2 =    "bowtie.2.1"

unfiltered_contigs = "abyss-contigs.fa"
contigs = "filtered-contigs.fa"

contig_nt_tsv = "contigs.nt.tsv"

input1 = "input_merged.r1.fq"
input2 = "input_merged.r2.fq"
