#!/usr/bin/python3

#Author: Joseph 7e

##for samples in dir, concat sequences --> fastqc and readcount
##trimmomatic on combine --> fastqc and readcount
##spades on combined
##	when corrected appears --> fastqc and readcount
##After spades, quast report and busco --> save info to output formatted for excel

###remove ALL unneeded files and create clean directory
		#all reads
###move on to mitochondria and contamination removal
###Need a script for that

 

stop using the wrong spades!!!
