| --- |
| library_name: transformers |
| base_model: 1aurent/phikon-finetuned-lora-kather2016 |
| tags: |
| - feature-extraction |
| - image-classification |
| - biology |
| - cancer |
| - owkin |
| - histology |
| model-index: |
| - name: owkin_pancancer |
| results: |
| - task: |
| type: image-classification |
| name: Image Classification |
| dataset: |
| name: 1aurent/Kather-texture-2016 |
| type: image-classification |
| metrics: |
| - type: accuracy |
| value: 0.928 |
| name: accuracy |
| verified: false |
| license: other |
| license_name: owkin-non-commercial |
| license_link: https://github.com/owkin/HistoSSLscaling/blob/main/LICENSE.txt |
| pipeline_tag: image-classification |
| datasets: |
| - 1aurent/Kather-texture-2016 |
| metrics: |
| - accuracy |
| widget: |
| - src: >- |
| https://datasets-server.huggingface.co/assets/1aurent/Kather-texture-2016/--/default/train/0/image/image.jpg |
| example_title: adipose |
| --- |
| |
| # Model card for phikon-distil-mobilenet_v2-kather2016 |
| |
| This model is a distilled version of [owkin/phikon](https://huggingface.co/owkin/phikon) to a MobileNet-v2 on the [1aurent/Kather-texture-2016](https://huggingface.co/datasets/1aurent/Kather-texture-2016) dataset. |
| |
| ## Model Usage |
| |
| ### Image Classification |
| ```python |
| from transformers import AutoModelForImageClassification, AutoImageProcessor |
| from urllib.request import urlopen |
| from PIL import Image |
| |
| # get example histology image |
| img = Image.open( |
| urlopen( |
| "https://datasets-server.huggingface.co/assets/1aurent/Kather-texture-2016/--/default/train/0/image/image.jpg" |
| ) |
| ) |
| |
| # load image_processor and model from the hub |
| image_processor = AutoImageProcessor.from_pretrained("owkin/phikon") |
| model = AutoModelForImageClassification.from_pretrained("1aurent/phikon-distil-mobilenet_v2-kather2016") |
|
|
| inputs = image_processor(img, return_tensors="pt") |
| outputs = model(**inputs) |
| ``` |
| |
| ## Citation |
| ```bibtex |
| @article{Filiot2023.07.21.23292757, |
| author = {Alexandre Filiot and Ridouane Ghermi and Antoine Olivier and Paul Jacob and Lucas Fidon and Alice Mac Kain and Charlie Saillard and Jean-Baptiste Schiratti}, |
| title = {Scaling Self-Supervised Learning for Histopathology with Masked Image Modeling}, |
| elocation-id = {2023.07.21.23292757}, |
| year = {2023}, |
| doi = {10.1101/2023.07.21.23292757}, |
| publisher = {Cold Spring Harbor Laboratory Press}, |
| url = {https://www.medrxiv.org/content/early/2023/09/14/2023.07.21.23292757}, |
| eprint = {https://www.medrxiv.org/content/early/2023/09/14/2023.07.21.23292757.full.pdf}, |
| journal = {medRxiv} |
| } |
| ``` |
