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| ===================== |
| BioMASS documentation |
| ===================== |
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| **Source code:** https://github.com/biomass-dev/biomass |
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| Arakane, K., Imoto, H., Ormersbach, F. & Okada, M. |
| Extending BioMASS to construct mathematical models from external knowledge. |
| *Bioinformatics Advances* **4**, vbae042 (2024). |
| https://doi.org/10.1093/bioadv/vbae042 |
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| .. toctree:: |
| :maxdepth: 1 |
| :caption: Contents: |
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| about |
| installation |
| tutorial/index |
| models |
| api/index |
| references |
| citing |
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| .. |PyPI version| image:: https://img.shields.io/pypi/v/biomass.svg?logo=PyPI&logoColor=white |
| :target: https://pypi.python.org/pypi/biomass/ |
| :alt: PyPI version |
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| .. |Actions Status| image:: https://github.com/biomass-dev/biomass/workflows/Tests/badge.svg |
| :target: https://github.com/biomass-dev/biomass/actions |
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| .. |Documentation Status| image:: https://img.shields.io/readthedocs/biomass-core/latest.svg?logo=read%20the%20docs&logoColor=white&&label=Docs&version=latest |
| :target: https://biomass-core.readthedocs.io/en/latest/?badge=latest |
| :alt: Documentation Status |
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| .. |License| image:: https://img.shields.io/badge/License-Apache%202.0-green.svg |
| :target: https://opensource.org/licenses/Apache-2.0 |
| :alt: License |
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| .. |Downloads| image:: https://static.pepy.tech/badge/biomass |
| :target: https://pepy.tech/project/biomass |
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| .. |Python versions| image:: https://img.shields.io/pypi/pyversions/biomass.svg?logo=Python&logoColor=white |
| :target: https://pypi.python.org/pypi/biomass/ |
| :alt: Python versions |
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| .. |Pre commit| image:: https://results.pre-commit.ci/badge/github/biomass-dev/biomass/master.svg |
| :target: https://results.pre-commit.ci/latest/github/biomass-dev/biomass/master |
| :alt: pre-commit.ci status |
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| .. |Code style| image:: https://img.shields.io/badge/code%20style-black-000000.svg |
| :target: https://github.com/psf/black |
| :alt: Code style: black |
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| .. |Imports| image:: https://img.shields.io/badge/%20imports-isort-%231674b1?style=flat&labelColor=ef8336 |
| :target: https://pycqa.github.io/isort/ |
| :alt: Imports: isort |
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