assembly stringclasses 65
values | chrom stringlengths 1 38 | start int64 0 1.8B | end int64 8.19k 1.8B | strand stringclasses 2
values | seq stringlengths 8.19k 8.19k |
|---|---|---|---|---|---|
Hannuus | HanXRQChr11 | 149,097,808 | 149,112,100 | + | gtggtcgactgcaacagtggaatgaagaatcagtgtttatacatcagTGGTTTTTAAGTATAATCAATGTcagtagttagcaaagcagtagttgtatagatcagtagatagagtttgttaggttgttagatgtcgctttcatggtgacgtcagctgagatgcgtcagtggattggattgcctataaaTATAACGGTACTCTgtactattacatttgattgactgagtggattcttcttcttcagtccaaAcctttcatcttgtgcaaccaaccttgaggtatcaggctgagggggagtttagttatgtaagcatgCTGCT... |
Ecoracana | 1B | 15,028,553 | 15,041,664 | + | TAGATTATGACTCTCATATTTTTACAATATTAGATTTCATAATACTTAATTTTTAGCTAAAACAAACGAGACCTAATACGAAATAGATTGGAACTTTAAGCGAGAAAAAACTCTTGTctaagagcatctccaaaagctccccaaaaaattgatcccaaaaAAGTGTTTTTGGGAGTAGCCCGAAAATTATTAAggagaagttttcttgtctccTTCAATAATTCTTTCTAAAAATAGACTATGAAAATATTTGATTGGGCCACGTTAGTATCTGGAACCAcaacaacattaattttcttctaaatacaagTATTAGGATC... |
Zmays | 1 | 271,759,452 | 271,770,839 | + | ATTTTCCTATTTAAACATTTTACTTGTACTAGTTTATTAGCCATACAGTTCTCAGAATTTTAAATCCTAGTGCAGGTATTACTGAACACATAGCCAATTTGTTTTAGTTGATTTCTGGTAGGCTTAGACTCTGTTGCCTTTGGTGGATAATATCATAATAACAAGAAAAAATTGTGAGTCATTTATTTTGTTATAGATACATGGTTTTTACTATGTATCTAGACATAGCGATAACATGTATCTATGTGCATATCAAAAAGTATGGACCTTGGAAAGCTTAAACGACTTACAGTTTGGAAGAGTAATTTTCATGTCTGCTG... |
Tintermedium | V07 | 27,564,305 | 27,577,610 | - | AGAGTTGACGAGCATACATGCTGCCCTCCGCAAGGTTGGGGACGTGCCACGGGACCAGCTCGACGAACAGGTAAAGCTCTGGGCCGACGAGGTCAGGGACATGTCATATAGAATGGAGGATATCGTCGACAAGTTCCTGGTGCGTGTCGAGGGCACTGAGCATGCCGTCAAACCACGGAAGCTCAAGCGGCTCATGAAGAAGATGGGCGGCTTGTTCACAAAGTTCATGACATCCCATGCCATCGGTGACAAGATCAAAGGAATCAAGGCCAGTGTCCAGGAGGTGGCTGACCGGCGTGACCGGTACAAGGTCGAAGATG... |
Rcommunis | 29912 | 657,018 | 668,629 | + | TATTTTAGTGTAATAATGAGATTGGACGATCGAAATGGCTATACACATAAAATAAAATATGAATAGAAAATACGAGCGGagaattattattattattattattattattatcaTTAATTTGAAAAAGAAAAAAAGGGTTGGCGGTGGAGAAACACAAACACTGAGACGTACAAAAACATGATAGGGAAACAAAATTGAATGACATTGATTGAATTTGTGATCGGGGTCAAATCAAAGTGGGGGAACATTACCTTACATGGGTTTGCAATAATGAACGCTAAGAATCACAAACAAAAAACAGATTGGGTACTAAATATAAG... |
Lsativa | Lsat_1_v8_lg_7 | 26,630,307 | 26,645,929 | + | gtaattagcatttgatgattaaataaaggagttttatttataagtaGagttactgtcttgtgttaattatttactattgtttcactttgcatgttttgatttcctaaataataagattatttaaactatccacaaCTGATCatacgttggaagtaagtatgaaataagattgtcatgaattggcttgtagactgtctaAGCGTTTAGACATAACAAAGGTATGCTGCaacgttcatgagtgctcttgaaatatgatttgagtattggattaaacccgcTCTCACATgaatcgcttcatggaatttaatcacgagtgattg... |
Egrandis | Chr08 | 71,381,249 | 71,393,115 | - | TTGAGAATATGATACAAACAATCTCTAAATTTTGACCTAATGTACAACGTAATTCTTGAAAttttaatttattcaatatgattCATGAACTAAGCCTAACGTGCAATGTGGTCCTTGATACCAATGAAGGGATTTATGCTTAGAACAAGGGAAAACTAAGTCAGTTGCAGTGGGCATGCTATCTCACAATAGGCGAATCACATGTTCAAGCCCTTTGGAGATTATTTTTTAGCTACAGACTACCTAGAGATGTAATAAAGAACATAGAGACATTCAATAATGCCGGGATAATAACATTTCTAACTAATCAAGTTGCATTT... |
Vvinifera | chr14 | 9,691,319 | 9,701,664 | + | AACTCATTGAAAGCTAGCCAGTCATTGACTGTTCATACACCATAATTCTTTATATTTTGCAGTTGTTGGATGTAATAGAAAATTTCATACTTATTGCATGTAGAAGCAAAGTTCAACCCATTTTTCTGTTTCCCCACTTGGAAGGCAAACCCACCTTCTAAGGAATGGCTCGCAACACACACATTGCTGTTTCCATAGCTGTGTGCAACTGATTTTAGTGCTTCAAAAGCTCTTTTGAATCAAATAAAACCCTTTAAGATTTCCTACGCCAGAAAGCGGAGATCATCCTCAATGTCTCTTCTAATAGTTAGGCTCTTGAG... |
Ckanehirae | CKAN.scaff0009 | 11,624,833 | 11,636,315 | - | AATTCTCCATTATGGGTTTTTGGTTCTTTTATCCTTTATATTCAGTTAATCAATTTTAAGAAGTTCTTTTGCAACCTCACATCAAAACTAAATTTTTCCTTCAATTCTTAAATGGCAGTGCATCTTGTTCTAGTGTTCCTCCACCCGTGCTTAGATTCTTCAAAACTTGTCTGCCGCCAAATAACATGAAGGCTTTGCAATGATTTCAATCAACAAGTTTTTTTAATTGACTTCTGGTAGATTTTGTCAGCTATATGACATTTTGCAGATTGGTCGTACATCCTTCCGACCCATATTCTTTTAGGTGTCTTTTTTTGGTT... |
Aofficinalis | AsparagusV1_02 | 10,479,719 | 10,506,444 | + | gtagaggatttgtgaacagtcagttaTTCGATGATATGAATGTTGACTCTATGTGACATGTGGACCAGTGAACCATTataggatggctagttacatgacctcgttacttggatgattaTGGCTTcttctgattgttatactctagtggtggattgcatCTAGATTGTTAGTATTTTCAGTTGCATGCTTCTATTGTTATTATTGTTATTGCATTGGTCGTTCGACTGTTTctattcttccttgtgggatcTTGCCATATGCCATGCATGCTGACGTACTCCTATTctctcgggttgtacgtcagaATTAGAGGACAGACA... |
Othomaeum | Oropetium_genomic_20141112_027 | 1,236,499 | 1,249,102 | + | TGAGGGGTAGTACATTGATTCACGTGTTGATGGGCTCAATCTTGTCACATTCAACCTCGTTCAGAAAGCAGCCACATGAACCTTTGCTGGAAAAATCTATGACATCGAAAACGCTGTCAAAGCAATTGTCCAACAACTTGGCTCCGAACATGATGGTGTTCGTACGACTAGGATCTTGCAGGCTTTGCAGCAGGTAAATCCCACTGTTTTGGGTGAAAATTTGTACAATTCTTTGATCTTACTATTGGACATTTGGACCAGCATTGTACTTTATGTCTTTTCTTAGAAAACAGCAACGTATATCTTGTATCATTTTTTTT... |
Lsativa | Lsat_1_v8_lg_9 | 56,592,594 | 56,606,912 | + | ATGGCATGACACATGTGAGATTTActgtttgttttttctgaggcaaaatgtctgcagACTACGGACCATATCTACAAACTTTTgcagtagaagaggtggaccaaacGTTTGTAGTCTGAAAGAAGTAGTCTGTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTGTTGTGTTTGCATAAAAAAAATATTTTTAANTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACATTTACAGGGTGTTCGAATAAATTAAAATCTTAAACTGatttaaaaaaaaaaattaaaaGATTTTTTTTGATAA... |
Vunguiculata | Vu06 | 31,358,086 | 31,370,763 | + | ATTGAAAATTCCCAAAGAATGAATTTCGAACAAAAACATAAGTCTGATAGAAAATTTGAAATTACCTGTATCTTTGGGAACAAGATGTTTGATAGTATTTTAGTACATATTTGAAATTTCAGCTGATTTTATAAATTGTCTTTAAATATAAAAAAACTCTAACCACAATAAAAGCATTTTTTTTTTACTTTAACTTGAATATTTCCGATACATAAAAGGATTTTATCAGTATCATACACATAATTTTTATATACAGTGTATATAAAGTAAAGTTTTACCAAGTTTGTTAATCACAGATTTTATGCTTTATATGATAATTA... |
Pvaginatum | Chr06 | 32,628,583 | 32,638,967 | + | GTCAAGAATATAGACAACTGTGATAAAAATATGAGAGAATTACCTATTTGGTCTAAAAAAATTTGGCGCTTTTTTCCTTGGTCTAGAAAATTTTTTGTTCCCTACTCGATCCAGAAATTTTGTTTAGTTTCTTTCTTGGCACATCCGTCCATTTGAAAAACCATTAAAAATCGAATaaaatgctaaaaattcaaactttgttgagttgtattccttgttagtagatctacaCAATGTTAAAGATGAGGATCCATGAAAATATTTTtatgccctcggtttattgcatgttatctaaaacaaaagaaatgccaaaaTGGGAt... |
Athaliana | Chr4 | 9,910,915 | 9,923,049 | + | GGTCATTTTTAATTTTTGTGCTCCTTCACTTTTACGAGGATATTTATATTTGGAACCAAGGTCCTATTACGCTTCATGCGATCTTAAGACTCAATAGCAGTTTGAAATTGGGCCTTACAGGACACTCATTATATTCTGGAGCATTTAATTTACAACTGGTATAAGTGACTTCATCACTTTATTTGGGTCAGCAAATGCGTCTGGCAATTACAACGCTAAATTCTATAATTAAATTATCTTTTGGACTCTTAATATACATTCTTTACTCCGAGGATCATTGATAATTCATTTCTTTTTATCTTTTTTTCACCAGCTGTATA... |
Dcarota | DCARv3_Chr7 | 26,500,137 | 26,520,635 | + | TTCGGGTATTTTAATATTTGGGGCATTTTCACCCCaaatttggttatttggggccGAAACCCAAGAAAATGAGGTTTCTCAAATGGTGTCGTAACAAGAACATGAACAAGACGTTTCTCGGGGAAGTGTCTACCTGTACCATATTGCCATAATTCTAAATCAAAAAAATTGGAAGTGGAGATACATTAAGAACTGAGAAGGGAAAGGGGCACTATTTTTATCATTACAGTCATCATATACATTGTTATTCGGACAATCAGTAACAGTTGTCCATTGATATTGTATCACTCCCCCTTTTTATTTTTATGCATACATATTAT... |
Spurpurea | Chr09 | 4,449,467 | 4,462,247 | - | GTATAATAATTCTCTCAATCATTTTTTACTGTATCCATTTCTTTTATGGTATATTTATTATCTATTTATAAGTATTATTGAGTTTGttttttaaattattattttttaaatatattaaaataatatttttttattttttgaaaattatttttaatatcagtatattaaaTTATTTACAAATAATTTAAAGTAAAAAAAAaattaaaaaaaaaaaacatttttAAAACCCAGTGTCATACTCCTAAATTTTTTTAGATTTCAttttttatttaattatataatGATAAAAATATATGTGAATAAAATTTTGGAGGGGAAGT... |
Bdistachyon | Bd2 | 38,258,725 | 38,269,906 | - | TTTTTCAGCAAGGCTCGTATATCACTCGGTTTGGATATGATCCATCCACGCAATGCTGATGCTGGTTTGCCGACTAGTGATACGAATGGAGGGAGGAGTGATACTGATGAGGCCTGTGCTGCTGAGATTGATTCAGCTATTTGTAGCACACAGTCCTCTCAGAAGATGGAGATTGATGCATGTCCTGCTGCTGATGAGACCACTCAAGGGTGCCATGTTTCTGGTATCACCTTTATACAGTCAAAAACGGATAGATCAACCGAGCCCGTTGTTGGTGACATAAAATTTGAGGAAGCTGAGAACAAAGCAGAAGATAGAAG... |
Tintermedium | V07 | 514,956,812 | 514,967,367 | - | GTGCTGCGAGCGGACTGCTACGATCTCAGTGGGCGGCAGAGCTCCGAGCATGGAGGGCGCTGAGGAGGACGACAGGTGTTGCACGGCGCTGCGGGACGTCGCATATGAGCCAGTGCTAGGAGAAGGCCCGTGTGGGTTGCAAGGCAAGGCAACCGGCGTACTCTTTCTATTATTAGTTGttactagcaaaagagcccgtgcgttgCAACTCGACAAAAAAAATCATAATCTTCAATGGTCATGACGACATTTTGCTGCCTCGccgagatacactatcactctcaatttcatgaaatcatgAAGTTTTTAAAAAACTCGTT... |
Acomosus | LG14 | 3,534,622 | 3,550,103 | - | AACTTATTCTTTCCAACTACGATAGTTGGAACTTCGGCAAAATTGGATATAGCCCTAATTACTGCAGTTGGGCTTCGTGGAATTCCAACCGTAGCCAATGAAATTAAACATAACAAGCTAAAATTAGACGTAGTTATTGAATTTAAACACATTAAACTAAAATTTTAAACTGAAATGTATTTGTAAAATTTTATCATTTTATATATGTACTAATGATTACCTCCAATGTGGAGAtattttttatttaaaaaataattaGTGAGGTATGCTTTTTTTTGTTTAAAAGTTTCCTATCTAACTACTATAGTTGGAACTGCAGT... |
Mesculenta | Chromosome04 | 1,808,884 | 1,828,228 | - | AGAAAATTAAATATTTGGGGGAAAATAATGATTGTATTTCATTCATATCCAGCCTGTTACATCACTCTCCCATTTATACAAGAATCAGAGTTTAACAACTTAACAACTTTTCCCTCCAATTACAGCTGTCACACTGTCACTTATTTATTTGCTTAAAATTCCACTATATCTATCACTTATTGACTTTCTTATTCCTTCAGGTATATGTGATAGTCACCTTCCAAGTTCCTTTTCAATTGATGTCGACTGGGCTTGAGTATCATGTGTTGTAGAGTGAACAAGCATTTTAATGAATCACTGTTGTGTAATAACAATATAGT... |
Rcommunis | 29780 | 36,245 | 50,679 | + | aattatattttaatattatattaattaataaattaattttttaattatataTAATTATAATTATAAAATATATTATATTTACTAGTACAGTAGTCTCTATGTGAATCTCTTCCAAACCAGCTCTGGCCACCACGATGGGAATGGCTCAACCCACATGCATCATTTGATGAAAGCACTCCAGTCCAGTCTCGAAGTGGCTTGTCAACCACGCTTTTCCTCCCTTAAATTAATGCTCCTAACTAATaattatataataatttttaattctaaaaaatTATAATATAATTTATACTgataatattaatttatataatattaga... |
Qrubra | LG4 | 35,406,068 | 35,441,480 | + | CCATTTGAGTGCCTTCTGCCTCTTTAGCATTTGACGAGTTCTTACCCGATCCGCTTAGAAACAAACAGACCCCCTCTCGACCCATTTGACCACCTTTACCTGAACTGACTTGAAACTCCAGATATCTGGTCTGTTATAAAATAGTGGCATGAAAATAAGCAGTTACTACTTGCTGGTTTGAAGGTTAATGCGGAAAAAAGTGAAATTGTTCCTATTGGGGAGGTAAGTAACTTTGATGATTTAGCAAGCATTCCTCAGTGCAGGGTGGGTAGTTTGCCAATGAAATATTAGAAATGCCTTTTGGTGCCCTGTTTAAGGCT... |
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Revision Notice!
This dataset was updated on 2025-12-010 to correct the duplicated sequences, see issues here. The update replaces the previous version in this repository.
Old version: b5b4eadfd32c6baea27a3e6fb7275ea34f064e87
🌱 Angiosperm_65_genomes_8192bp: 8,192 bp Genomic Windows from 65 Angiosperm Genomes
This dataset provides tokenized 8,192 base-pair (bp) genomic windows across 65 plant genomes from the Phytozome database. It is formatted using the Hugging Face datasets library and supports efficient loading, training, and evaluation of DNA language models.
📦 Dataset Structure
The dataset is stored in Hugging Face's Apache Arrow format and includes three standard splits:
train/– main training datavalidation/– held-out validation settest/– final evaluation set
Each split consists of .arrow shards and is registered in dataset_dict.json.
Example Usage
from datasets import load_dataset
dataset = load_dataset("plantcad/Angiosperm_65_genomes_8192bp")
print(dataset["train"])
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