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2 | PMID-10329026 | [
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3 | PMID-10346818 | [
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4 | PMID-10364168 | [
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5 | PMID-10369669 | [
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6 | PMID-10373560 | [
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7 | PMID-10383454 | [
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8 | PMID-10385526 | [
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9 | PMID-10389141 | [
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10 | PMID-10391247 | [
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12 | PMID-10455013 | [
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"ref_id": "PMID-10523842_T1"
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]
},
... | [] | [] |
18 | PMID-10542212 | [
{
"id": "PMID-10542212__text",
"type": "abstract",
"text": [
"Interleukin-10 signaling blocks inhibitor of kappaB kinase activity and nuclear factor kappaB DNA binding. \nThe transcription factor nuclear factor kappaB (NF-kappaB) coordinates the activation of numerous genes in response to pathogen... | [
{
"id": "PMID-10542212_T1",
"type": "Gene_or_gene_product",
"offsets": [
[
0,
14
]
],
"text": [
"Interleukin-10"
],
"normalized": []
},
{
"id": "PMID-10542212_T2",
"type": "Complex",
"offsets": [
[
32,
58
]
... | [
{
"id": "PMID-10542212_E1",
"type": "Pathway",
"trigger": {
"text": [
"signaling"
],
"offsets": [
[
15,
24
]
]
},
"arguments": [
{
"role": "Participant",
"ref_id": "PMID-10542212_T1"
}
]
},
{
... | [
{
"id": "PMID-10542212_1",
"entity_ids": [
"PMID-10542212_T4",
"PMID-10542212_T5"
]
},
{
"id": "PMID-10542212_2",
"entity_ids": [
"PMID-10542212_T10",
"PMID-10542212_T11"
]
},
{
"id": "PMID-10542212_3",
"entity_ids": [
"PMID-10542212_T13",
... | [] |
19 | PMID-10556521 | [
{
"id": "PMID-10556521__text",
"type": "abstract",
"text": [
"Cloning and functional characterization of the human sodium-dependent vitamin C transporters hSVCT1 and hSVCT2. \nTwo sodium-dependent vitamin C transporters, hSVCT1 and hSVCT2, were cloned from a human kidney cDNA library. hSVCT1 had a... | [
{
"id": "PMID-10556521_T1",
"type": "Simple_chemical",
"offsets": [
[
53,
59
]
],
"text": [
"sodium"
],
"normalized": []
},
{
"id": "PMID-10556521_T2",
"type": "Simple_chemical",
"offsets": [
[
70,
79
]
],
... | [
{
"id": "PMID-10556521_E1",
"type": "Positive_regulation",
"trigger": {
"text": [
"dependent"
],
"offsets": [
[
60,
69
]
]
},
"arguments": [
{
"role": "Cause",
"ref_id": "PMID-10556521_T1"
},
{
... | [
{
"id": "PMID-10556521_1",
"entity_ids": [
"PMID-10556521_T17",
"PMID-10556521_T18"
]
}
] | [] |
End of preview. Expand in Data Studio
Dataset Card for BioNLP 2013 PC
the Pathway Curation (PC) task is a main event extraction task of the BioNLP shared task (ST) 2013. The PC task concerns the automatic extraction of biomolecular reactions from text. The task setting, representation and semantics are defined with respect to pathway model standards and ontologies (SBML, BioPAX, SBO) and documents selected by relevance to specific model reactions. Two BioNLP ST 2013 participants successfully completed the PC task. The highest achieved F-score, 52.8%, indicates that event extraction is a promising approach to supporting pathway curation efforts.
Citation Information
@inproceedings{ohta-etal-2013-overview,
title = "Overview of the Pathway Curation ({PC}) task of {B}io{NLP} Shared Task 2013",
author = "Ohta, Tomoko and
Pyysalo, Sampo and
Rak, Rafal and
Rowley, Andrew and
Chun, Hong-Woo and
Jung, Sung-Jae and
Choi, Sung-Pil and
Ananiadou, Sophia and
Tsujii, Jun{'}ichi",
booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
month = aug,
year = "2013",
address = "Sofia, Bulgaria",
publisher = "Association for Computational Linguistics",
url = "https://aclanthology.org/W13-2009",
pages = "67--75",
}
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